SRR1544735_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544735_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1014208
Sequences flagged as poor quality	0
Sequence length	52
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6302	0.6213715529753265	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3942	0.38867766769735596	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2369	0.2335812772133527	No Hit
CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCTT	2192	0.2161292358175049	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT	1805	0.17797138259607498	No Hit
GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT	1179	0.11624834353505395	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTC	35	1.0194162E-7	46.000004	6
GATCGAA	55	1.8189894E-12	46.000004	15
GACAACT	35	1.0194162E-7	46.000004	9
ATCACGC	55	1.8189894E-12	46.000004	24
GCCGCAC	35	1.0194162E-7	46.000004	9
ATGAGCG	35	1.0194162E-7	46.000004	1
TATTCGT	55	1.8189894E-12	46.000004	14
TGTTCGC	35	1.0194162E-7	46.000004	46
GACGGTC	70	0.0	46.000004	29
ACTAAGG	35	1.0194162E-7	46.000004	2
GCGATGT	105	0.0	46.000004	9
GGTTGCG	35	1.0194162E-7	46.000004	1
CGGTCTA	70	0.0	46.000004	31
CAGTCGC	35	1.0194162E-7	46.000004	12
GAACCGA	35	1.0194162E-7	46.000004	9
AGTAGTA	35	1.0194162E-7	46.000004	1
CGCAAAC	55	1.8189894E-12	46.000004	28
TATACGA	55	1.8189894E-12	46.000004	46
CCAAACG	55	1.8189894E-12	46.000004	34
ACGAGCC	35	1.0194162E-7	46.000004	10