##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544735_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1014208 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.72370361898151 33.0 31.0 34.0 31.0 34.0 2 33.11517952924844 34.0 33.0 34.0 31.0 34.0 3 33.14397046759639 34.0 33.0 34.0 31.0 34.0 4 36.44820194674071 37.0 37.0 37.0 35.0 37.0 5 36.43531701583896 37.0 37.0 37.0 35.0 37.0 6 36.51647393828485 37.0 37.0 37.0 35.0 37.0 7 36.62852491796554 37.0 37.0 37.0 35.0 37.0 8 36.632018284217835 37.0 37.0 37.0 35.0 37.0 9 38.39457586609453 39.0 39.0 39.0 37.0 39.0 10 38.27322699091311 39.0 39.0 39.0 37.0 39.0 11 38.02227748154225 39.0 39.0 39.0 35.0 39.0 12 36.832178409162616 39.0 35.0 39.0 35.0 39.0 13 36.62534904082791 38.0 35.0 39.0 35.0 39.0 14 37.534118247933364 39.0 35.0 41.0 35.0 41.0 15 37.6145139852969 39.0 35.0 41.0 35.0 41.0 16 37.73832389411245 39.0 35.0 41.0 35.0 41.0 17 37.72405265980943 39.0 35.0 41.0 35.0 41.0 18 37.81481609295135 38.0 36.0 41.0 35.0 41.0 19 37.757934269893354 38.0 36.0 41.0 35.0 41.0 20 37.56329470877769 38.0 35.0 41.0 35.0 41.0 21 37.46346114406512 38.0 35.0 41.0 35.0 41.0 22 37.39073148703225 38.0 35.0 41.0 35.0 41.0 23 37.35778065248943 37.0 35.0 41.0 35.0 41.0 24 37.30239063387392 37.0 35.0 41.0 35.0 41.0 25 37.292817646873225 37.0 35.0 41.0 35.0 41.0 26 37.244736779832145 37.0 35.0 41.0 35.0 41.0 27 37.221342170442355 37.0 35.0 41.0 35.0 41.0 28 37.2592771896889 36.0 35.0 41.0 35.0 41.0 29 37.258839409667445 36.0 35.0 41.0 35.0 41.0 30 37.24564882154351 36.0 35.0 41.0 35.0 41.0 31 37.07301263646116 36.0 35.0 41.0 35.0 41.0 32 36.9325542689468 36.0 35.0 41.0 34.0 41.0 33 36.80121927651921 36.0 35.0 41.0 34.0 41.0 34 36.68241721619234 36.0 35.0 41.0 34.0 41.0 35 36.5898799851707 36.0 35.0 41.0 34.0 41.0 36 36.491387368271596 36.0 35.0 41.0 34.0 41.0 37 36.44666084274626 36.0 35.0 41.0 33.0 41.0 38 36.36806848299363 35.0 35.0 41.0 33.0 41.0 39 36.39340943869502 36.0 35.0 41.0 33.0 41.0 40 36.28038627184956 36.0 35.0 41.0 33.0 41.0 41 36.2959018268442 36.0 35.0 41.0 33.0 41.0 42 36.306735896384176 36.0 35.0 41.0 33.0 41.0 43 36.241650627879096 35.0 35.0 41.0 33.0 41.0 44 36.133007233230266 35.0 35.0 41.0 33.0 41.0 45 36.08545880135041 35.0 35.0 40.0 33.0 41.0 46 36.03685733104057 35.0 35.0 40.0 33.0 41.0 47 36.004864879787974 35.0 35.0 40.0 33.0 41.0 48 35.99393418312614 35.0 35.0 40.0 33.0 41.0 49 36.03002737111125 36.0 35.0 40.0 33.0 41.0 50 35.87840857102291 35.0 35.0 40.0 33.0 41.0 51 35.810197710923205 35.0 35.0 40.0 33.0 41.0 52 35.60012344607812 36.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 4.0 14 6.0 15 13.0 16 34.0 17 54.0 18 143.0 19 288.0 20 468.0 21 792.0 22 1266.0 23 2171.0 24 3495.0 25 5556.0 26 7582.0 27 8601.0 28 8261.0 29 8556.0 30 9447.0 31 11311.0 32 15147.0 33 21652.0 34 62732.0 35 329831.0 36 39059.0 37 38851.0 38 74456.0 39 362897.0 40 1533.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.04895642708399 24.84352322206096 30.336183504764307 13.771336846090742 2 28.92424433646747 26.97563024547233 30.593724364232976 13.506401053827222 3 27.41597384362971 25.41401763740771 32.87836420142614 14.291644317536441 4 24.234082160661323 28.49119707200101 32.51147693569761 14.763243831640057 5 21.29316668770114 34.372436423297785 30.587611219789235 13.746785669211839 6 20.89679828989714 41.982906859342464 26.52522953871395 10.595065312046444 7 88.0451544456364 4.964267684735281 5.269136114090995 1.7214417555373256 8 89.2770516501546 3.3211136177194422 5.273967470183631 2.127867261942323 9 85.73320265665426 4.884008014135167 6.899866694011485 2.482922635199091 10 56.408645958225534 25.042101817378683 10.378443080709282 8.170809143686503 11 54.56691329589197 15.885893229002335 18.77711475358112 10.770078721524579 12 49.5558110367893 19.255813403167792 20.41169069855493 10.776684861487979 13 20.04914179339938 49.179359657979425 19.967107338928503 10.804391209692685 14 11.744928062093772 52.74894301760585 24.232997570518076 11.273131349782293 15 10.205303054205842 23.27540307313687 55.675857417807784 10.843436454849497 16 11.717418912096928 18.323164479081214 54.223394017795165 15.736022591026694 17 12.089531930333818 18.16146194863381 28.481534359815736 41.26747176121663 18 17.523131349782293 22.524570896699693 41.085655013567234 18.866642739950777 19 29.930842588502554 22.779646778570076 26.06713810184893 21.222372531078438 20 33.12969331734713 21.78823278854042 27.83423124250647 17.247842651605982 21 18.91564649460466 31.854708304410927 30.780668265286803 18.44897693569761 22 20.46049725500095 23.78910440461917 24.034024578784628 31.716373761595257 23 14.26867072632044 33.03405218653373 24.13025730422162 28.567019782924213 24 15.310666056666877 21.979515050167226 46.3826946740708 16.327124219095097 25 11.880403230895437 24.60935035022402 44.72337035401022 18.786876064870324 26 12.186454849498327 38.748560453082604 27.59710039755159 21.46788429986748 27 13.035886129866853 44.53524326370922 27.093456174670283 15.335414431753644 28 10.078997602069792 32.55535353694706 41.57766454218464 15.787984318798513 29 11.463920615889442 24.43335094970657 40.734247807155924 23.368480627248058 30 14.6686872909699 38.880880450558465 29.38243437243642 17.06799788603521 31 29.902741843882126 30.657813781788352 24.206080015144824 15.233364359184703 32 32.72208462169496 25.64730311730927 27.7585071306872 13.872105130308576 33 31.412589922382782 29.203378399697105 21.975669685113903 17.40836199280621 34 17.16847037294125 30.45795339811952 24.407813781788352 27.965762447150883 35 15.924741275951284 26.858790307313683 33.044799488862246 24.171668927872783 36 33.96265854735912 24.31818719631476 26.128466744494226 15.590687511831893 37 16.868926295197827 37.979586041522055 30.201004133274438 14.950483530005679 38 15.856707894238657 38.715726951473464 22.979704360446775 22.447860793841105 39 17.774953461222946 37.21711917082098 28.426713258029913 16.58121410992617 40 25.28278223007509 26.36076623335647 24.813253297154038 23.5431982394144 41 14.725381775730423 24.17364090995141 27.938746292673695 33.16223102164447 42 19.01996434656402 22.01737710607686 27.414199059758943 31.548459487600176 43 19.40617703666309 22.39087051176879 28.926019120338236 29.276933331229888 44 14.956300877137629 29.750406228308197 32.48810894806588 22.805183946488295 45 14.097798479207421 45.4364390736417 22.33368303148861 18.132079415662268 46 20.858936233987503 37.98757256894049 24.66456584842557 16.488925348646433 47 17.140172430112955 30.514450684672177 25.09672572095665 27.24865116425822 48 19.7427943774847 25.007986527418442 35.340186628383925 19.909032466712944 49 21.398076134284093 22.96205512084306 36.327952451568116 19.311916293304726 50 18.993145390294693 37.68023916198649 26.22617845649019 17.100436991228623 51 15.311159052186534 37.42644506846722 23.675616835994195 23.586779043352056 52 17.893765381460213 27.991792610588757 36.9778191455796 17.136622862371425 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7000.0 1 5718.5 2 4437.0 3 5781.0 4 7125.0 5 4827.0 6 2529.0 7 2742.0 8 2955.0 9 3189.0 10 3423.0 11 3508.0 12 3593.0 13 3478.5 14 3262.0 15 3160.0 16 2938.5 17 2717.0 18 2715.0 19 2713.0 20 2973.0 21 3233.0 22 3860.0 23 4487.0 24 6026.5 25 7566.0 26 7701.0 27 7836.0 28 8217.5 29 8599.0 30 10183.5 31 11768.0 32 14695.5 33 17623.0 34 20400.0 35 23177.0 36 25619.5 37 28062.0 38 34821.5 39 57098.0 40 72615.0 41 104344.5 42 136074.0 43 144679.5 44 153285.0 45 144024.0 46 134763.0 47 116966.0 48 99169.0 49 82179.0 50 65189.0 51 56671.5 52 48154.0 53 41081.0 54 34008.0 55 28738.0 56 23468.0 57 19890.0 58 16312.0 59 13925.5 60 11539.0 61 9912.5 62 8286.0 63 6823.0 64 4431.5 65 3503.0 66 3018.5 67 2534.0 68 1835.0 69 1136.0 70 903.5 71 671.0 72 523.5 73 376.0 74 404.0 75 432.0 76 324.0 77 216.0 78 145.0 79 74.0 80 79.0 81 84.0 82 44.5 83 5.0 84 4.5 85 4.0 86 2.5 87 1.0 88 0.5 89 1.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1014208.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.22456346606901 #Duplication Level Percentage of deduplicated Percentage of total 1 74.33977431214285 11.317906120684654 2 10.985918816534381 3.345116365108188 3 4.041842906243838 1.8460588153797037 4 1.9569580735917635 1.191753295673358 5 1.0352185873133117 0.7880375541902909 6 0.694448031937333 0.6343600881669986 7 0.5044531277501252 0.5376055061362159 8 0.3733016592220114 0.4546683842251502 9 0.3085766542809649 0.4228150371523008 >10 3.110124742786807 11.35605622788783 >50 1.0097845169158013 11.020997274471176 >100 1.612922562779814 53.09216357335125 >500 0.02277220237890016 2.2303503022828775 >1k 0.0032531717684143088 1.1378590301262843 >5k 6.506343536828617E-4 0.6242524251637367 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6302 0.6213715529753265 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3942 0.38867766769735596 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2369 0.2335812772133527 No Hit CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCTT 2192 0.2161292358175049 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT 1805 0.17797138259607498 No Hit GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT 1179 0.11624834353505395 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.22480595696346312 0.0 2 0.0 0.0 0.0 0.6710655013567237 0.0 3 0.0 0.0 0.0 0.8872933362781599 0.0 4 0.0 0.0 0.0 1.153116520477062 0.0 5 0.0 0.0 0.0 1.8892574304284722 0.0 6 0.0 0.0 0.0 2.3745622199785448 0.0 7 0.0 0.0 0.0 2.7257722281819903 0.0 8 0.0 0.0 0.0 3.488436297090932 0.0 9 0.0 0.0 0.0 3.7359200479586043 0.0 10 0.0 0.0 0.0 4.210674733388023 0.0 11 0.0 0.0 0.0 4.78432432006058 0.0 12 0.0 0.0 0.0 5.254937843124882 0.0 13 0.0 0.0 0.0 5.432810626617026 0.0 14 0.0 0.0 0.0 5.487237331987127 0.0 15 0.0 0.0 0.0 5.593527166025115 0.0 16 0.0 0.0 0.0 5.854617593235313 0.0 17 0.0 0.0 0.0 6.166880955385878 0.0 18 0.0 0.0 0.0 6.652382943143813 0.0 19 0.0 0.0 0.0 6.834298289897141 0.0 20 0.0 0.0 0.0 7.037609642203572 0.0 21 0.0 0.0 0.0 7.321673660629772 0.0 22 0.0 0.0 0.0 7.592722597337035 0.0 23 9.859910393134348E-4 0.0 0.0 7.920071622389096 0.0 24 0.0019719820786268695 0.0 0.0 8.145469173976148 0.0 25 0.002070581182558213 0.0 0.0 8.31377784438695 0.0 26 0.002070581182558213 0.0 0.0 8.51994857070739 0.0 27 0.002070581182558213 0.0 0.0 8.688651637533917 0.0 28 0.002070581182558213 0.0 0.0 8.877173124250646 0.0 29 0.002070581182558213 0.0 0.0 9.059482867419701 0.0 30 0.002070581182558213 0.0 0.0 9.35222360699186 0.0 31 0.002070581182558213 0.0 0.0 9.630075881870386 0.0 32 0.002070581182558213 0.0 0.0 9.852614059443427 0.0 33 0.002070581182558213 0.0 0.0 10.040149555120843 0.0 34 0.002169180286489556 0.0 0.0 10.252334826781095 0.0 35 0.002169180286489556 0.0 0.0 10.583430617782545 0.0 36 0.002169180286489556 0.0 0.0 10.813955322774026 0.0 37 0.002169180286489556 0.0 0.0 11.037676689594244 0.0 38 0.0022677793904208998 0.0 0.0 11.240692244588882 0.0 39 0.0022677793904208998 0.0 0.0 11.454849498327759 0.0 40 0.0023663784943522433 0.0 0.0 11.719095096863759 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTTC 35 1.0194162E-7 46.000004 6 GATCGAA 55 1.8189894E-12 46.000004 15 GACAACT 35 1.0194162E-7 46.000004 9 ATCACGC 55 1.8189894E-12 46.000004 24 GCCGCAC 35 1.0194162E-7 46.000004 9 ATGAGCG 35 1.0194162E-7 46.000004 1 TATTCGT 55 1.8189894E-12 46.000004 14 TGTTCGC 35 1.0194162E-7 46.000004 46 GACGGTC 70 0.0 46.000004 29 ACTAAGG 35 1.0194162E-7 46.000004 2 GCGATGT 105 0.0 46.000004 9 GGTTGCG 35 1.0194162E-7 46.000004 1 CGGTCTA 70 0.0 46.000004 31 CAGTCGC 35 1.0194162E-7 46.000004 12 GAACCGA 35 1.0194162E-7 46.000004 9 AGTAGTA 35 1.0194162E-7 46.000004 1 CGCAAAC 55 1.8189894E-12 46.000004 28 TATACGA 55 1.8189894E-12 46.000004 46 CCAAACG 55 1.8189894E-12 46.000004 34 ACGAGCC 35 1.0194162E-7 46.000004 10 >>END_MODULE