##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544719_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1200022 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69990633505052 33.0 31.0 34.0 31.0 34.0 2 33.10581222677584 34.0 33.0 34.0 31.0 34.0 3 33.13790080515191 34.0 33.0 34.0 31.0 34.0 4 36.45650829734788 37.0 37.0 37.0 35.0 37.0 5 36.45995240087265 37.0 37.0 37.0 35.0 37.0 6 36.53144859010918 37.0 37.0 37.0 35.0 37.0 7 36.63823413237424 37.0 37.0 37.0 35.0 37.0 8 36.63972243842196 37.0 37.0 37.0 35.0 37.0 9 38.38197466379783 39.0 39.0 39.0 37.0 39.0 10 38.26696010573139 39.0 39.0 39.0 37.0 39.0 11 38.02142377389748 39.0 39.0 39.0 35.0 39.0 12 37.05554564832978 39.0 35.0 39.0 35.0 39.0 13 36.91627653493019 39.0 35.0 39.0 35.0 39.0 14 37.935391184494954 40.0 35.0 41.0 35.0 41.0 15 37.97754624498551 40.0 35.0 41.0 35.0 41.0 16 38.076616095371584 40.0 35.0 41.0 35.0 41.0 17 38.04989908518344 40.0 35.0 41.0 35.0 41.0 18 38.12856264301821 39.0 36.0 41.0 35.0 41.0 19 38.11066880440525 40.0 36.0 41.0 35.0 41.0 20 37.925371368191584 40.0 35.0 41.0 35.0 41.0 21 37.841538738456464 40.0 35.0 41.0 35.0 41.0 22 37.77130419275647 39.0 35.0 41.0 35.0 41.0 23 37.714466068122086 39.0 35.0 41.0 35.0 41.0 24 37.66282368156584 39.0 35.0 41.0 35.0 41.0 25 37.679719205147904 39.0 35.0 41.0 35.0 41.0 26 37.623916894856926 39.0 35.0 41.0 35.0 41.0 27 37.61336458831588 39.0 35.0 41.0 35.0 41.0 28 37.64780729019968 39.0 35.0 41.0 35.0 41.0 29 37.63642249892085 39.0 35.0 41.0 35.0 41.0 30 37.60082815148389 39.0 35.0 41.0 35.0 41.0 31 37.443204374586465 39.0 35.0 41.0 35.0 41.0 32 37.330209779487376 39.0 35.0 41.0 35.0 41.0 33 37.191840649588094 39.0 35.0 41.0 34.0 41.0 34 37.080532690234016 39.0 35.0 41.0 34.0 41.0 35 36.963634000043335 38.0 35.0 41.0 34.0 41.0 36 36.868226582512655 38.0 35.0 41.0 34.0 41.0 37 36.81591004164924 38.0 35.0 41.0 34.0 41.0 38 36.71959264080159 38.0 35.0 41.0 33.0 41.0 39 36.76004773245824 38.0 35.0 41.0 34.0 41.0 40 36.61214044409186 38.0 35.0 41.0 33.0 41.0 41 36.62106194719763 38.0 35.0 41.0 33.0 41.0 42 36.60616722026763 38.0 35.0 41.0 33.0 41.0 43 36.54998075035291 38.0 35.0 41.0 33.0 41.0 44 36.47336798825355 38.0 35.0 41.0 33.0 41.0 45 36.403228440811915 37.0 35.0 41.0 33.0 41.0 46 36.37372898163534 37.0 35.0 41.0 33.0 41.0 47 36.31699418843988 37.0 35.0 41.0 33.0 41.0 48 36.287018904653415 37.0 35.0 41.0 33.0 41.0 49 36.31890498674191 37.0 35.0 40.0 33.0 41.0 50 36.163579501042484 37.0 35.0 40.0 33.0 41.0 51 36.109591324159055 36.0 35.0 40.0 33.0 41.0 52 35.85071773684149 36.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 2.0 14 2.0 15 10.0 16 32.0 17 90.0 18 182.0 19 335.0 20 574.0 21 984.0 22 1486.0 23 2432.0 24 4106.0 25 6509.0 26 8863.0 27 9784.0 28 9532.0 29 9676.0 30 10708.0 31 12929.0 32 16596.0 33 23481.0 34 64918.0 35 330629.0 36 43632.0 37 52064.0 38 101190.0 39 487213.0 40 2059.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.378906386716245 25.355868475744614 29.08971668852738 13.175508449011769 2 29.586207586194252 25.915191554821494 31.363841662902846 13.134759196081406 3 26.88092384972942 24.767962587352564 33.79329712288608 14.557816440031932 4 24.090891666986106 29.2427138835788 32.52273708315347 14.143657366281618 5 22.385589597524046 34.893526952005885 28.44547849956084 14.275404950909234 6 21.637519978800388 41.621153612183775 26.032856064305488 10.708470344710348 7 88.78803888595375 3.9580941016081375 5.4948159283746465 1.759051084063459 8 89.49519258813588 2.8793638783288973 5.41681735834843 2.2086261751867884 9 85.12477271250027 4.484167790257178 7.548111617953671 2.8429478792888796 10 53.05044407519195 26.698177200084665 11.054464001493306 9.196914723230073 11 49.11418290664671 18.640074931959578 20.45579164381986 11.789950517573844 12 44.86026089521692 20.32246075488616 23.644566516280534 11.172711833616383 13 19.010901466806445 47.02797115386218 22.01276309934318 11.948364279988201 14 12.79076550263245 48.09828486477748 26.6260118564493 12.484937776140772 15 11.16162870347377 23.053744014693063 53.99759337745474 11.78703390437842 16 13.86057922271425 19.336645494832595 49.43001044980842 17.372764832644734 17 13.26909006668211 18.505160738719788 29.862202526287017 38.36354666831108 18 18.097501545804995 22.195259753571182 40.542590052515706 19.16464864810812 19 29.691288993035126 23.077910238312295 26.400099331512255 20.83070143714032 20 31.4076741926398 22.133677549244933 27.66724276721593 18.791405490899333 21 18.07933521218778 29.657539611773785 32.31215761044381 19.95096756559463 22 20.044132524237053 23.447070137047486 25.204454584999276 31.30434275371618 23 13.91691152328874 32.284658114601235 26.35276686594079 27.44566349616924 24 14.362486687744058 22.788332213909413 47.55246153820513 15.296719560141398 25 12.812765099306514 26.270018382996312 41.29990950165914 19.617307016038037 26 13.619666972772166 37.39423110576306 28.71664019492976 20.269461726535013 27 13.093926611345458 41.04899743504703 28.889720355126826 16.967355598480694 28 11.56795458749923 30.924683047477465 41.04091424990542 16.466448115117892 29 12.132694233939043 24.537966803941927 39.85785260603556 23.47148635608347 30 15.657962937346149 36.46599812336774 31.62292024646215 16.253118692823964 31 29.150048915769876 30.81360175063457 24.949459259913567 15.086890073681984 32 31.32017579677706 24.844377853072693 28.59889235364018 15.236553996510063 33 29.722955079156883 28.458811588454214 23.559234747362964 18.25899858502594 34 18.14091741651403 27.91007164868644 26.495347585294272 27.45366334950526 35 17.67025937857806 26.087855055990637 33.846879473876314 22.39500609155499 36 32.629818453328355 24.737463146508983 25.984356953455855 16.64836144670681 37 17.1204361253377 38.332463904828415 29.18979818703324 15.357301782800647 38 17.481929497959204 37.69380894683598 24.865710795302086 19.958550759902735 39 19.457226617512013 36.129587624226886 26.836341333742215 17.576844424518885 40 24.80921183111643 24.723463403170943 26.681927497995872 23.78539726771676 41 15.793043794197107 24.99837502979112 27.330832268075085 31.877748907936688 42 19.66663944494351 23.233157392114478 26.417182351656887 30.68302081128513 43 19.27381331342259 23.336405499232516 29.331128929302963 28.05865225804194 44 15.568131250927067 29.662706183719965 32.79498209199498 21.974180473357986 45 13.832246408815838 44.13369088233382 23.263240173930143 18.770822534920192 46 19.768470911366627 35.986506914039914 26.286851407724193 17.958170766869273 47 18.130334277204916 29.268046752476206 26.85184104958076 25.749777920738122 48 19.192564802978612 25.38011803116943 35.37893471953014 20.048382446321817 49 21.533688549043266 23.752647868122416 36.504580749352925 18.209082833481386 50 18.355413484086124 37.473146325650696 26.804258588592546 17.367181601670637 51 16.564779645706494 35.885342102061465 25.632613402087628 21.917264850144413 52 17.86517247183802 27.163918661491206 37.12273608317181 17.84817278349897 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4677.0 1 4315.5 2 3954.0 3 6040.0 4 8126.0 5 5571.5 6 3017.0 7 3165.5 8 3314.0 9 3603.5 10 3893.0 11 3800.5 12 3708.0 13 4072.5 14 4239.5 15 4042.0 16 3952.0 17 3862.0 18 3402.0 19 2942.0 20 3638.0 21 4334.0 22 4739.5 23 5145.0 24 7091.0 25 9037.0 26 9742.5 27 10448.0 28 13244.0 29 16040.0 30 16126.0 31 16212.0 32 21763.0 33 27314.0 34 30878.5 35 34443.0 36 41146.5 37 47850.0 38 49535.5 39 71627.0 40 92033.0 41 118590.5 42 145148.0 43 157180.0 44 169212.0 45 153278.5 46 137345.0 47 125738.0 48 114131.0 49 94494.0 50 74857.0 51 65838.5 52 56820.0 53 51288.5 54 45757.0 55 37306.5 56 28856.0 57 24271.5 58 19687.0 59 17143.0 60 14599.0 61 12962.0 62 11325.0 63 9500.0 64 6465.5 65 5256.0 66 4220.0 67 3184.0 68 2677.0 69 2170.0 70 1800.0 71 1430.0 72 1117.5 73 805.0 74 729.5 75 654.0 76 521.5 77 389.0 78 391.0 79 393.0 80 295.0 81 197.0 82 122.5 83 48.0 84 29.5 85 11.0 86 15.0 87 19.0 88 10.5 89 2.0 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1200022.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.162501455359658 #Duplication Level Percentage of deduplicated Percentage of total 1 74.79980507530645 11.34152153314953 2 10.53085532833558 3.193482184841405 3 3.766651646618386 1.7133558322105238 4 1.8815358741090984 1.1411516171796245 5 1.1045624429581204 0.8373964824444061 6 0.7154948376100179 0.6509214909938532 7 0.5375639685564606 0.5705570118910374 8 0.4193304248953176 0.508647854220147 9 0.3323862498750436 0.45358262977247 >10 3.3286316791503676 11.67878914484623 >50 0.9885162445892675 10.603209935777596 >100 1.5626181887638018 53.31967117405818 >500 0.02928527722930746 2.8307007332557697 >1k 0.002762762002764855 1.1570123753592263 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4721 0.39340945416000705 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4195 0.3495769244230522 No Hit CTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGCTT 2043 0.17024687880722186 TruSeq Adapter, Index 14 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGCT 1433 0.11941447740124764 TruSeq Adapter, Index 15 (95% over 22bp) GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1418 0.11816450031749418 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.17783007311532623 0.0 2 0.0 0.0 0.0 0.47765790960499055 0.0 3 0.0 0.0 0.0 0.6430715436883657 0.0 4 0.0 0.0 0.0 0.8776505764060992 0.0 5 0.0 0.0 0.0 1.4732229909118333 0.0 6 0.0 0.0 0.0 1.9006318217499345 0.0 7 0.0 0.0 0.0 2.1943764364319986 0.0 8 0.0 0.0 0.0 2.859947567627927 0.0 9 0.0 0.0 0.0 3.0721103446436815 0.0 10 0.0 0.0 0.0 3.4877693908945004 0.0 11 0.0 0.0 0.0 3.991926814675064 0.0 12 8.33318055835643E-5 0.0 0.0 4.426252185376601 0.0 13 8.33318055835643E-5 0.0 0.0 4.581416007373198 0.0 14 8.33318055835643E-5 0.0 0.0 4.632581736001507 0.0 15 8.33318055835643E-5 0.0 0.0 4.726580012699767 0.0 16 8.33318055835643E-5 0.0 0.0 4.942492720966782 0.0 17 8.33318055835643E-5 0.0 0.0 5.219654306337717 0.0 18 8.33318055835643E-5 0.0 0.0 5.638729956617462 0.0 19 8.33318055835643E-5 0.0 0.0 5.811310125981024 0.0 20 1.666636111671286E-4 0.0 0.0 6.0206396216069376 0.0 21 1.666636111671286E-4 0.0 0.0 6.262135194188106 0.0 22 2.499954167506929E-4 0.0 0.0 6.495380918016503 0.0 23 2.499954167506929E-4 0.0 0.0 6.822874913959911 0.0 24 3.333272223342572E-4 0.0 0.0 7.014538066802109 0.0 25 3.333272223342572E-4 0.0 0.0 7.178951719218481 0.0 26 3.333272223342572E-4 0.0 0.0 7.361281709835319 0.0 27 3.333272223342572E-4 0.0 0.0 7.521695435583681 0.0 28 3.333272223342572E-4 0.0 0.0 7.7362748349613595 0.0 29 3.333272223342572E-4 0.0 0.0 7.925771360858384 0.0 30 3.333272223342572E-4 0.0 0.0 8.173683482469489 0.0 31 3.333272223342572E-4 0.0 0.0 8.398012703100443 0.0 32 3.333272223342572E-4 0.0 0.0 8.585425933857879 0.0 33 3.333272223342572E-4 0.0 0.0 8.827504829078133 0.0 34 3.333272223342572E-4 0.0 0.0 9.037667642759883 0.0 35 3.333272223342572E-4 0.0 0.0 9.307996020072965 0.0 36 3.333272223342572E-4 0.0 0.0 9.511575621113613 0.0 37 3.333272223342572E-4 0.0 0.0 9.716655194654765 0.0 38 3.333272223342572E-4 0.0 0.0 9.913901578471062 0.0 39 3.333272223342572E-4 0.0 0.0 10.117147852289374 0.0 40 3.333272223342572E-4 0.0 0.0 10.352310207646193 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAATA 35 1.0196163E-7 46.000004 10 ACACGTC 35 1.0196163E-7 46.000004 28 GATAATC 35 1.0196163E-7 46.000004 37 GTTTAGC 70 0.0 46.000004 2 CGAGGCA 35 1.0196163E-7 46.000004 22 CGTGTAT 70 0.0 46.000004 13 CAATCTC 35 1.0196163E-7 46.000004 35 TATCGAT 35 1.0196163E-7 46.000004 13 TGATGCG 70 0.0 46.000004 1 CCCATAG 35 1.0196163E-7 46.000004 43 CTTACCG 35 1.0196163E-7 46.000004 46 TGATCCG 30 1.8614719E-6 46.0 35 CTTCGAA 25 3.417246E-5 46.0 46 CGGGTGG 80 0.0 46.0 6 CTATGCG 40 5.6115823E-9 46.0 1 CTCACGA 55 1.8189894E-12 46.0 24 GTACCAT 30 1.8614719E-6 46.0 12 TCGCAAA 25 3.417246E-5 46.0 23 ACCGGGA 40 5.6115823E-9 46.0 4 GTCGATC 25 3.417246E-5 46.0 9 >>END_MODULE