SRR1544710_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544710_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	940031
Sequences flagged as poor quality	0
Sequence length	52
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4724	0.5025366184732206	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4391	0.46711225480861807	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1629	0.17329215738629897	No Hit
CTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCTT	1568	0.16680300968797837	Illumina Single End Adapter 2 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCT	1368	0.145527115595124	TruSeq Adapter, Index 22 (96% over 25bp)
TTAGCGGGGAGGATTCTTACCAAAATGAATTATCATCACAGAACTTATAAAA	1087	0.11563448439466358	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	20	6.3108635E-4	46.000004	1
AGCGTAT	20	6.3108635E-4	46.000004	15
CGGCGAA	20	6.3108635E-4	46.000004	27
TCGCATA	20	6.3108635E-4	46.000004	1
GCCCATA	20	6.3108635E-4	46.000004	17
ATCTCGC	20	6.3108635E-4	46.000004	37
ACACGTA	20	6.3108635E-4	46.000004	37
CGTATGG	55	1.8189894E-12	46.000004	2
GTCGAGC	20	6.3108635E-4	46.000004	16
CTCCGAT	20	6.3108635E-4	46.000004	45
TTAGACT	55	1.8189894E-12	46.000004	44
TAAACGG	20	6.3108635E-4	46.000004	2
CAACCCG	20	6.3108635E-4	46.000004	23
AAGCGTA	20	6.3108635E-4	46.000004	14
CGCGATC	20	6.3108635E-4	46.000004	33
CGACATA	20	6.3108635E-4	46.000004	23
ATACTCG	40	5.6097633E-9	46.000004	44
GACTTAT	20	6.3108635E-4	46.000004	32
AGACGAG	20	6.3108635E-4	46.000004	1
TAACCTA	20	6.3108635E-4	46.000004	44