##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544700_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1880044 Sequences flagged as poor quality 0 Sequence length 52 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.68060428372953 33.0 31.0 34.0 31.0 34.0 2 33.095739780558326 34.0 33.0 34.0 31.0 34.0 3 33.14235251940912 34.0 33.0 34.0 31.0 34.0 4 36.47684043564938 37.0 37.0 37.0 35.0 37.0 5 36.47316605356045 37.0 37.0 37.0 35.0 37.0 6 36.535906606441124 37.0 37.0 37.0 35.0 37.0 7 36.611784085904375 37.0 37.0 37.0 35.0 37.0 8 36.60225771311735 37.0 37.0 37.0 35.0 37.0 9 38.28931982442964 39.0 39.0 39.0 37.0 39.0 10 38.220188463674255 39.0 39.0 39.0 37.0 39.0 11 38.05158123958801 39.0 39.0 39.0 35.0 39.0 12 37.3695631591601 39.0 35.0 39.0 35.0 39.0 13 37.25884287814541 39.0 35.0 39.0 35.0 39.0 14 38.453128756561014 40.0 35.0 41.0 35.0 41.0 15 38.470467180555346 40.0 35.0 41.0 35.0 41.0 16 38.52226809585308 40.0 35.0 41.0 35.0 41.0 17 38.48047652076228 40.0 35.0 41.0 35.0 41.0 18 38.50494030990764 40.0 36.0 41.0 35.0 41.0 19 38.469658688839196 40.0 36.0 41.0 35.0 41.0 20 38.33046035092796 40.0 35.0 41.0 35.0 41.0 21 38.26190078530077 40.0 35.0 41.0 35.0 41.0 22 38.18816048986088 40.0 35.0 41.0 35.0 41.0 23 38.11212503537151 40.0 35.0 41.0 35.0 41.0 24 38.04863715955584 40.0 35.0 41.0 35.0 41.0 25 38.04788132618173 40.0 35.0 41.0 35.0 41.0 26 38.00394352472602 40.0 35.0 41.0 35.0 41.0 27 37.965217303424815 40.0 35.0 41.0 35.0 41.0 28 37.93740784790143 40.0 35.0 41.0 35.0 41.0 29 37.9037065089966 40.0 35.0 41.0 35.0 41.0 30 37.847039750133504 40.0 35.0 41.0 35.0 41.0 31 37.7550323290306 40.0 35.0 41.0 35.0 41.0 32 37.636616483444 40.0 35.0 41.0 35.0 41.0 33 37.51637514866673 40.0 35.0 41.0 34.0 41.0 34 37.376451295820736 40.0 35.0 41.0 34.0 41.0 35 37.24904895842863 40.0 35.0 41.0 34.0 41.0 36 37.141913167989685 40.0 35.0 41.0 34.0 41.0 37 37.09543978757944 40.0 35.0 41.0 34.0 41.0 38 36.975091008508315 40.0 35.0 41.0 33.0 41.0 39 36.97110493158671 39.0 35.0 41.0 33.0 41.0 40 36.84822802019527 39.0 35.0 41.0 33.0 41.0 41 36.834461853020464 39.0 35.0 41.0 33.0 41.0 42 36.803513109267655 39.0 35.0 41.0 33.0 41.0 43 36.7618358932025 39.0 35.0 41.0 33.0 41.0 44 36.65892021676088 39.0 35.0 41.0 33.0 41.0 45 36.59578233275391 39.0 35.0 41.0 33.0 41.0 46 36.53526619589754 39.0 35.0 41.0 33.0 41.0 47 36.48795187772201 38.0 35.0 41.0 33.0 41.0 48 36.43446695928393 38.0 35.0 41.0 33.0 41.0 49 36.38476333532619 38.0 35.0 41.0 33.0 41.0 50 36.28225828757199 38.0 35.0 41.0 33.0 41.0 51 36.225250047339316 38.0 35.0 40.0 32.0 41.0 52 36.00094359493714 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 2.0 12 6.0 13 7.0 14 6.0 15 27.0 16 47.0 17 136.0 18 307.0 19 546.0 20 999.0 21 1598.0 22 2593.0 23 4010.0 24 6550.0 25 10430.0 26 14592.0 27 16640.0 28 16621.0 29 16579.0 30 17710.0 31 20890.0 32 26361.0 33 36469.0 34 95591.0 35 380501.0 36 75726.0 37 99643.0 38 186707.0 39 845428.0 40 3318.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.53261944933203 23.520992061887913 28.920014637955283 14.026373850824768 2 31.52665575912053 25.39270357502271 29.565265493786313 13.51537517207044 3 28.86783500811683 25.4223305412001 32.2069057958218 13.502928654861268 4 26.339223975609084 28.226254279155167 31.435540870320054 13.998980874915693 5 23.555193389090896 33.62368114788803 28.8881004912651 13.93302497175598 6 22.470006021135674 41.792372944463004 25.552912591407434 10.184708442993887 7 87.49683518045323 4.536595952009634 6.203897355593805 1.7626715119433374 8 87.79810472520856 3.668371591303182 6.502401007635991 2.0311226758522674 9 83.22007357274617 5.991402328881665 7.623757741840084 3.164766356532081 10 46.69071574920587 28.59837322956271 13.313890525966412 11.397020495265005 11 41.80859596903051 21.110091040422457 23.00015318790411 14.081159802642917 12 39.39875875245473 20.966796521783532 24.95776694587999 14.676677779881746 13 20.22447346976986 38.186446700183616 26.05524126031093 15.533838569735604 14 15.467031622664152 39.32232437113174 28.504864779760474 16.70577922644364 15 14.826089176636293 24.875002925463445 45.40228845707867 14.896619440821599 16 16.572963185967986 21.1466859286272 43.56323575405682 18.717115131347988 17 16.377648608224064 21.891402541642645 29.628455504232882 32.10249334590041 18 19.651561346436573 24.03268221382053 36.85530764173605 19.460448798006855 19 26.463210435500446 24.507777477548398 29.157030367374382 19.871981719576777 20 29.168785411405263 22.799147254000438 29.205380299610006 18.82668703498429 21 20.446489550244568 28.47204639891407 30.420458244594272 20.661005806247086 22 21.64805717312999 23.86555846565293 26.279916853009823 28.206467508207254 23 17.35762567259064 29.91094889268549 27.697170917276402 25.03425451744746 24 16.890615326024285 24.23815612826083 42.14720506541336 16.724023480301526 25 16.162387688798773 27.313243732593495 35.96926454912757 20.555104029480162 26 16.36312767148003 34.05558593309518 28.35678313911802 21.224503256306768 27 16.609664454661697 36.415583890589794 28.63885100561476 18.335900649133745 28 15.171666195046498 30.307641736044477 36.37930814385195 18.141383925057074 29 16.412009506160494 24.490171506624314 34.929182508494485 24.16863647872071 30 17.444857673543808 33.34560254972756 30.75454617019602 18.454993606532614 31 26.404169264123606 29.627604460321145 26.614962203012272 17.353264072542984 32 27.98354719357632 25.860139443544938 28.529864194667788 17.626449168210957 33 26.502677596907308 28.237956132941573 26.50884766526741 18.750518604883716 34 19.28805921563538 27.47265489531096 28.36332553918951 24.87596034986415 35 19.932884549510543 26.132367114812205 32.46971879381547 21.465029541861785 36 28.95958817985111 27.425900670409842 26.806181131930956 16.808330017808093 37 18.995672441708813 35.242260287525184 29.698985768418183 16.063081502347817 38 19.586137345721696 34.318984023778164 26.83575490786386 19.25912372263628 39 21.15413256285491 33.04358834154945 28.06077942856657 17.74149966702907 40 24.65133794740974 26.997506441338608 27.860305397107727 20.490850214143926 41 17.12039718219361 26.616185578635392 30.082327860411777 26.18108937875922 42 19.48167170555583 25.979019639965873 27.540632027761053 26.99867662671725 43 20.869245613400537 25.156858030982253 28.982353604490108 24.991542751127103 44 17.227309573605723 29.941426902774616 30.47896751352628 22.35229601009338 45 16.621100357225682 38.260593900993804 24.581286395424787 20.537019346355724 46 20.118039790558093 34.491958698838964 26.55416575356747 18.835835757035476 47 19.341249460119016 28.977460101997615 28.88432398390676 22.79696645397661 48 20.537232107333658 26.00604028416356 34.08420228462738 19.372525323875397 49 21.196365616974923 26.362414922203946 33.54708719583159 18.894132264989544 50 19.40922659256911 33.27677437336573 29.001608472993183 18.312390561071975 51 17.678150085849055 32.454187242426244 27.28909536159792 22.578567310126786 52 18.314624551340287 27.971366627589568 34.90939573754657 18.804613083523577 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 6963.0 1 7068.5 2 7174.0 3 12471.0 4 17768.0 5 11987.5 6 6207.0 7 6491.5 8 6776.0 9 7243.5 10 7711.0 11 7808.5 12 7906.0 13 7738.0 14 6951.0 15 6332.0 16 6088.5 17 5845.0 18 6093.0 19 6341.0 20 6050.5 21 5760.0 22 7361.0 23 8962.0 24 11142.0 25 13322.0 26 14932.0 27 16542.0 28 23769.0 29 30996.0 30 35346.5 31 39697.0 32 41751.0 33 43805.0 34 53841.0 35 63877.0 36 64887.5 37 65898.0 38 72449.5 39 104264.5 40 129528.0 41 155231.0 42 180934.0 43 192481.0 44 204028.0 45 195983.0 46 187938.0 47 175895.5 48 163853.0 49 145176.5 50 126500.0 51 111506.0 52 96512.0 53 85207.5 54 73903.0 55 65725.0 56 57547.0 57 51845.0 58 46143.0 59 44224.5 60 42306.0 61 38916.0 62 35526.0 63 29907.5 64 21323.0 65 18357.0 66 15102.0 67 11847.0 68 10313.0 69 8779.0 70 7495.5 71 6212.0 72 5326.5 73 4441.0 74 3669.5 75 2898.0 76 2385.5 77 1873.0 78 1410.0 79 947.0 80 819.5 81 692.0 82 448.0 83 204.0 84 173.0 85 142.0 86 136.5 87 131.0 88 88.0 89 27.5 90 10.0 91 6.5 92 3.0 93 2.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1880044.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.861633927222806 #Duplication Level Percentage of deduplicated Percentage of total 1 76.51396071427163 11.371224744574123 2 9.571638949874625 2.8450038831316804 3 3.350635792936289 1.4938776773420714 4 1.578413414171436 0.938312093889352 5 0.9207423085947979 0.6841867565820949 6 0.6009563135833075 0.5358715643237058 7 0.46519376321454664 0.48394775898852316 8 0.3484532880052173 0.41428681656565425 9 0.28087349428388697 0.37568151467163324 >10 3.6177136185809395 13.34984706246699 >50 1.2059285639822515 12.61961948390073 >100 1.5156026276120167 51.11332170685831 >500 0.027366547801975078 2.427533196388025 >1k 0.0018004307764457289 0.48264895503336697 >5k 3.6008615528914577E-4 0.31279334096574235 >10k+ 3.6008615528914577E-4 0.5518434443180043 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10312 0.5484978011152931 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5845 0.3108969790068743 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 2473 0.13153947460804108 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09877428400611901 0.0 2 5.3190244483639744E-5 0.0 0.0 0.2945675739503969 0.0 3 5.3190244483639744E-5 0.0 0.0 0.4086074581233205 0.0 4 5.3190244483639744E-5 0.0 0.0 0.55839118658925 0.0 5 5.3190244483639744E-5 0.0 0.0 0.9759877960303057 0.0 6 5.3190244483639744E-5 0.0 0.0 1.3068843069630285 0.0 7 5.3190244483639744E-5 0.0 0.0 1.5110284652912378 0.0 8 5.3190244483639744E-5 0.0 0.0 1.9686773288284742 0.0 9 5.3190244483639744E-5 0.0 0.0 2.1370776428636775 0.0 10 5.3190244483639744E-5 0.0 0.0 2.4587722415007307 0.0 11 5.3190244483639744E-5 0.0 0.0 2.885943094948842 0.0 12 5.3190244483639744E-5 0.0 0.0 3.2270521328224233 0.0 13 1.0638048896727949E-4 0.0 0.0 3.3632723489450247 0.0 14 1.0638048896727949E-4 0.0 0.0 3.409281910423373 0.0 15 1.0638048896727949E-4 0.0 0.0 3.488163042992611 0.0 16 1.0638048896727949E-4 0.0 0.0 3.663584469299655 0.0 17 1.0638048896727949E-4 0.0 0.0 3.872568939875875 0.0 18 1.0638048896727949E-4 0.0 0.0 4.160594113754785 0.0 19 1.0638048896727949E-4 0.0 0.0 4.297239851833255 0.0 20 1.0638048896727949E-4 0.0 0.0 4.445374682720192 0.0 21 1.0638048896727949E-4 0.0 0.0 4.65286982645087 0.0 22 1.0638048896727949E-4 0.0 0.0 4.858662882358073 0.0 23 1.0638048896727949E-4 0.0 0.0 5.089880875128454 0.0 24 1.5957073345091924E-4 0.0 0.0 5.275674399109808 0.0 25 1.5957073345091924E-4 0.0 0.0 5.419075298237701 0.0 26 1.5957073345091924E-4 0.0 0.0 5.568486694992245 0.0 27 1.5957073345091924E-4 0.0 0.0 5.716355574656763 0.0 28 1.5957073345091924E-4 0.0 0.0 5.865235068966471 0.0 29 2.1276097793455898E-4 0.0 0.0 6.032677958600969 0.0 30 2.1276097793455898E-4 0.0 0.0 6.218099150870937 0.0 31 2.659512224181987E-4 0.0 0.0 6.398945982115312 0.0 32 2.659512224181987E-4 0.0 0.0 6.564739974170817 0.0 33 2.659512224181987E-4 0.0 0.0 6.737767839476097 0.0 34 3.191414669018385E-4 0.0 0.0 6.907976621823744 0.0 35 3.191414669018385E-4 0.0 0.0 7.128822516919817 0.0 36 3.191414669018385E-4 0.0 0.0 7.320945679994724 0.0 37 3.191414669018385E-4 0.0 0.0 7.498707477059048 0.0 38 3.191414669018385E-4 0.0 0.0 7.690458308422569 0.0 39 3.191414669018385E-4 0.0 0.0 7.879336866583974 0.0 40 3.191414669018385E-4 0.0 0.0 8.10374650806045 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATCCCG 20 6.3124823E-4 46.000004 32 TTCGTCA 20 6.3124823E-4 46.000004 13 CGTTAAG 20 6.3124823E-4 46.000004 27 TGTTGCG 20 6.3124823E-4 46.000004 1 TACGCTA 20 6.3124823E-4 46.000004 19 CGCTCGA 40 5.6152203E-9 46.000004 26 GCCGAAC 20 6.3124823E-4 46.000004 23 TGCGCAT 20 6.3124823E-4 46.000004 23 CGCTAAT 20 6.3124823E-4 46.000004 43 ACTACGA 20 6.3124823E-4 46.000004 45 CTACCTA 20 6.3124823E-4 46.000004 36 CGTAACG 20 6.3124823E-4 46.000004 28 CGTCGGA 40 5.6152203E-9 46.000004 25 TATACGC 20 6.3124823E-4 46.000004 15 TACGTAA 40 5.6152203E-9 46.000004 45 CCCGATA 40 5.6152203E-9 46.000004 24 TAATCGC 20 6.3124823E-4 46.000004 23 GATCGGA 30 1.8620394E-6 46.0 13 CGACGTG 25 3.417991E-5 46.0 16 AGATACG 130 0.0 46.0 1 >>END_MODULE