SRR1544696_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544696_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1194997
Sequences flagged as poor quality	0
Sequence length	52
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8843	0.7400018577452496	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5074	0.42460357641065205	No Hit
CTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGCTT	4070	0.34058662908777176	TruSeq Adapter, Index 14 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGCT	3066	0.2565696817648914	TruSeq Adapter, Index 15 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2606	0.21807586127831283	No Hit
AAAACTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCT	2186	0.18292932952969757	No Hit
GCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGCT	1405	0.11757351692096299	TruSeq Adapter, Index 15 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGAA	45	3.092282E-10	46.000004	46
GATACGT	45	3.092282E-10	46.000004	11
CCTTACA	35	1.0196163E-7	46.000004	23
GTCGAAT	70	0.0	46.000004	12
ATTACCG	35	1.0196163E-7	46.000004	25
GGATCCG	45	3.092282E-10	46.000004	1
GTTAGTC	35	1.0196163E-7	46.000004	36
TAAGTCC	35	1.0196163E-7	46.000004	28
TGCGGTC	45	3.092282E-10	46.000004	4
CACGACA	35	1.0196163E-7	46.000004	39
CGACAAC	35	1.0196163E-7	46.000004	26
GCTTGAT	45	3.092282E-10	46.000004	36
TGTGATA	45	3.092282E-10	46.000004	19
CGTTAAG	35	1.0196163E-7	46.000004	25
GTAGCAC	35	1.0196163E-7	46.000004	35
TCCAGCG	35	1.0196163E-7	46.000004	1
CGGATCT	35	1.0196163E-7	46.000004	27
TACGACA	35	1.0196163E-7	46.000004	45
ACTACGA	35	1.0196163E-7	46.000004	43
TCGTCAA	35	1.0196163E-7	46.000004	40