SRR1528189_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1528189_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1149368
Sequences flagged as poor quality	0
Sequence length	59
%GC	40

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTCGTGGATGGGATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCT	2923	0.25431367499356167	No Hit
TAGTTGGATGGGGGGTGAAACCCCGTCTCTACTAAAAATACAAAACATTAGCCAGGTGT	2218	0.19297561790479636	No Hit
GGGATGGATGGGGACCTGCGCCCGCAGCGCTTCGCCGAGCAGATTGGACGATCCCAGCC	2044	0.17783686338927132	No Hit
GACGTGGATGGGGCCTAGGACTAGCCAGCTAGCCTGGCATCACTCATTCCAACAGGGCC	2004	0.17435668993742648	No Hit
ACTGTGGATGGGGGTAGCAAGCAGGGAGGGATCCGCGGCCATCATCAGCGACACCATCA	1979	0.17218158153002344	No Hit
CGATTGGATGGGGGCAGCCTGATACTGCCACATGCTGCACAGTGCCCACCCATCAGAAG	1869	0.16261110453745015	No Hit
GGGATGGATGGGGAATCCCAGCCCTTTGGGAGTCCAAGGCAGGTGGATAGCCTGAGGTC	1791	0.1558247663063527	No Hit
AGGCTGGATGGGGTACTACTTCATTGCAACTTTCATCGCTGACCACATCAGACACCATG	1677	0.14590627196859493	No Hit
TTTTTGGATGGGGCAGGCAGGAGGATCTCTTAGTAGCTTAGTAGAGGTCAGCCTGGTCT	1662	0.1446012069241531	No Hit
CGTTTGGATGGGGAGTTCCTAAGGGCGCATGGTGGATGCCTTGGCAACAGGAGCCGATG	1659	0.14434019391526473	No Hit
GGTCTGGATGGGGGCGCCCCAGTTCCCCTGACCATCAACCAGCGGATAACGGTAAGAGA	1642	0.14286112019823066	No Hit
TAAGTGGATGGGGTTACCCTACTCCACTATGCCCTCATCTTAACTAATTATATCTGCAA	1581	0.1375538556841673	No Hit
GTGGTGGATGGGGAACTGCCAACGTCACTGAGGGCCCTGCTCTGAAGCCCTGGGCCCTG	1542	0.1341606865686186	No Hit
TAGATGGATGTGGGGCCAATATGGTGAAAACCAGACTCTACAAAAAGCACAAAAATTCG	1520	0.13224659117010393	No Hit
CTTTTGGATGGGGTTCCCAGTCTCTGTTTCTTAGCCCAGGAAAAGAATTCCTAGGCTCT	1499	0.1304195001078854	No Hit
TTTGTGGATGGGAGCACACAAGTGTTCATAGTAGTTTCACTTGTAGTAGCCAAAAACAG	1448	0.1259822789567832	No Hit
ATGCTGGATGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCT	1433	0.12467721391234139	No Hit
AGTGTGGATGGGGTCAAACTCTCAATTAACCATGGAAGACATGCACTGCATTATATACT	1416	0.12319814019530734	No Hit
ACTCTGGATGGGGTCACAGGGGCATGTGTTCCACTATGTTCATAATGGCCTTATTTGTG	1385	0.1205010057701276	No Hit
TGGGTGGATGGGAGTTTCTGATATTCCCTGACACAATTAAGGAATGCCTTTAGGCCCTA	1367	0.11893492771679741	No Hit
GTACTGGATGGGGGTACCAACTCCACAGCCCACACCTTCTAATAGTGCCACTTCCTGAG	1363	0.11858691037161292	No Hit
TGATTGGATGGGGGAGGCCAAGATGTTCAGATCGCTTGAGCTCAGGAGTTTGAGACCAG	1340	0.11658581063680215	No Hit
TAACTGGATGGGGGCTTTCCGGCGGTGACGACCTCCCTACGAGAACATGCCTCTCGCAA	1334	0.11606378461902542	No Hit
ATGCTGGATGGGGGCTCCGCCAGATCGCCGCCATCATGGACACGAGTCGCGTGCAGCCC	1307	0.11371466753903016	No Hit
GTCTTGGATGGGGGGGCTGGAGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	1305	0.1135406588664379	No Hit
GCTATGGATGGGGCTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAGT	1280	0.11136555045903487	No Hit
TATTTGGATGGGGGGAGTCACCCCTCAAGGATGGCCTCTGGGGTTTCTGCTCATGCCCC	1261	0.10971246806940858	No Hit
TCCATGGATGGGGGTTCAAGAGATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGGACTAC	1224	0.10649330762645211	No Hit
TTCGTGGATGGGGTGACCAATGGAAAGAACTTAGTGCTGGTGTGTACCACTGATATACT	1205	0.10484022523682579	No Hit
TTTCTGGATGGGGTTGATGAACTTGGAGTTCCCGTGTTCCTTTAATTAGCCTATGATTT	1189	0.10344815585608787	No Hit
CTTCTGGATGGGGGTCAAGAAAGTCAATGAGGAAATTAAATGTAAATTCTGAGCAGCCA	1188	0.10336115151979175	No Hit
CAAGTGGATGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAACACCGACTGCTCTTCC	1185	0.10310013851090338	No Hit
TCTGTGGATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1172	0.1019690821390538	No Hit
TATCTGGATGGGGACAGCAAGTTGTTGTTCTAGAACTTTGAACACTAAATGGAAGAAAA	1157	0.100664017094612	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	75	53.000004	49
TTGGCTT	75	53.000004	39
TCTGATA	175	53.000004	17
GTTTCAC	150	53.000004	34
TCCTCAG	75	53.000004	52
CGACACG	75	53.000004	48
TAACGAA	75	53.000004	51
GCGCACT	155	53.000004	32
CATTAGC	310	53.000004	46
CACTACA	155	53.000004	35
TCTAAAT	135	53.000004	46
ACTACAC	155	53.000004	36
TTAACGA	75	53.000004	50
ACGTCAC	150	53.000004	22
CGCACTA	155	53.000004	33
TTTGAGG	75	53.000004	28
CGCAATT	155	53.000004	20
GCTAACT	150	53.000004	38
TATACAA	75	53.000004	41
ATTTGAC	75	53.000004	15

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content