FastQCFastQC Report
Fri 17 Jun 2016
SRR1528179_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1528179_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14912353
Sequences flagged as poor quality0
Sequence length52
%GC38

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACTCG206.313897E-446.00000445
GTTACTC206.313897E-446.00000435
ACCTTAC206.313897E-446.00000429
CCTTACT253.4191384E-546.030
CATATCT1100.046.041
CCTAGAC750.046.031
TTATGTC900.046.018
CGATTTA900.046.024
CCGCTAA551.8189894E-1246.046
TAACATC600.046.018
CTGTTCA253.4191384E-546.022
CATACTG650.046.041
CTATTGG253.4191384E-546.036
CGACTTG1250.046.034
GTACGGT1150.046.036
CTTACGG650.046.039
CCTATAA351.0206713E-745.99999644
CACGTGT2250.044.9777841
CCGGTAA2150.044.93023315
TCCGGTA2150.044.93023314
Produced by FastQC (version 0.11.5)