##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528179_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14912353 Sequences flagged as poor quality 0 Sequence length 52 %GC 38 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.849276100156697 31.0 31.0 34.0 27.0 34.0 2 31.559099761117512 31.0 31.0 34.0 28.0 34.0 3 31.74945677586897 31.0 31.0 34.0 30.0 34.0 4 35.47609810470554 37.0 35.0 37.0 33.0 37.0 5 35.189573905606984 37.0 35.0 37.0 33.0 37.0 6 35.35953413924684 37.0 35.0 37.0 33.0 37.0 7 35.362981080182315 37.0 35.0 37.0 32.0 37.0 8 35.324532486590144 37.0 35.0 37.0 32.0 37.0 9 37.4400075561516 39.0 37.0 39.0 34.0 39.0 10 37.766348409268474 39.0 37.0 39.0 35.0 39.0 11 37.820011905565806 39.0 37.0 39.0 35.0 39.0 12 37.68094176686939 39.0 37.0 39.0 35.0 39.0 13 37.59281047062124 39.0 37.0 39.0 35.0 39.0 14 38.024885609936945 40.0 38.0 40.0 33.0 40.0 15 36.989760167292175 39.0 36.0 40.0 31.0 40.0 16 35.882657753608704 38.0 35.0 40.0 31.0 40.0 17 35.345451653404396 38.0 34.0 40.0 27.0 40.0 18 35.40699801030729 38.0 34.0 40.0 27.0 40.0 19 35.6860785819649 38.0 34.0 40.0 27.0 40.0 20 35.870014745493215 38.0 34.0 40.0 30.0 40.0 21 36.00144926826773 38.0 35.0 40.0 30.0 40.0 22 36.12225615903808 38.0 35.0 40.0 30.0 40.0 23 36.139561342197304 38.0 35.0 40.0 30.0 40.0 24 36.123072395080776 38.0 35.0 40.0 30.0 40.0 25 36.26629600305197 39.0 35.0 40.0 30.0 40.0 26 36.0734104805593 39.0 35.0 40.0 30.0 40.0 27 35.82573823192088 38.0 35.0 40.0 29.0 40.0 28 35.50057184134523 38.0 35.0 40.0 27.0 40.0 29 35.29051987972656 37.0 34.0 40.0 28.0 40.0 30 35.05412217642648 36.0 34.0 40.0 27.0 40.0 31 34.803229309284724 35.0 33.0 40.0 26.0 40.0 32 34.54216219264659 35.0 33.0 40.0 25.0 40.0 33 34.14321435389841 35.0 33.0 40.0 23.0 40.0 34 33.78085061425249 35.0 33.0 40.0 22.0 40.0 35 33.55114025264826 35.0 33.0 40.0 21.0 40.0 36 33.30856934515968 35.0 33.0 39.0 21.0 40.0 37 33.11952003818579 35.0 33.0 40.0 21.0 40.0 38 32.76821545198132 35.0 33.0 39.0 18.0 40.0 39 32.268931133805644 35.0 32.0 39.0 16.0 40.0 40 31.76168871538918 35.0 31.0 39.0 15.0 40.0 41 31.075248822234826 35.0 30.0 38.0 10.0 40.0 42 30.31080641666677 35.0 25.0 38.0 9.0 40.0 43 29.446479304775043 35.0 23.0 37.0 8.0 40.0 44 28.6026849015712 34.0 21.0 36.0 8.0 40.0 45 27.951050850258174 34.0 20.0 35.0 8.0 40.0 46 27.329328242162724 33.0 17.0 35.0 8.0 40.0 47 26.676880570088436 33.0 15.0 35.0 8.0 40.0 48 26.199745003353932 33.0 10.0 35.0 8.0 39.0 49 25.89228809162444 33.0 10.0 35.0 8.0 39.0 50 25.530991252688292 33.0 10.0 35.0 8.0 39.0 51 25.132685901413414 33.0 10.0 35.0 8.0 38.0 52 24.36338309588031 31.0 9.0 35.0 8.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 11.0 12 16.0 13 52.0 14 191.0 15 692.0 16 2592.0 17 8242.0 18 19453.0 19 38074.0 20 65285.0 21 97868.0 22 138386.0 23 185384.0 24 244695.0 25 322711.0 26 418001.0 27 529286.0 28 659713.0 29 806737.0 30 934967.0 31 952815.0 32 843152.0 33 784884.0 34 911100.0 35 1182666.0 36 1648983.0 37 2045904.0 38 1835980.0 39 234511.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.95526118513959 23.941285456426627 36.240444415445374 2.863008942988407 2 29.35098840538445 21.621624702687765 30.655873020173274 18.371513871754512 3 17.696898671859497 22.40467349451827 35.02863029060538 24.86979754301685 4 14.219607059999184 25.725846216220877 33.123558703311275 26.930988020468664 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 100.0 0.0 0.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 100.0 0.0 11 99.54677843261892 0.2818267512846564 0.13718827605542866 0.034206540040998226 12 99.22971244041769 0.5726862823056831 0.10438325863128374 0.09321801864534725 13 96.717828500975 2.1700867730263624 0.5253094531761687 0.5867752728224714 14 60.23477984996733 26.930505199280084 5.243941046728173 7.5907739040244016 15 43.5091564691367 34.23668283603533 13.361928865283701 8.89223182954427 16 44.59974224054379 32.54624538461503 14.616191019619773 8.237821355221406 17 30.235496705315384 35.47003615056591 18.901537537369187 15.39292960674952 18 23.639877623605074 45.715602360003146 17.435363822194926 13.209156194196852 19 25.293399371648455 46.663065178245176 17.25368223244179 10.789853217664575 20 18.45115925032086 50.81892844140693 18.92535671600585 11.804555592266357 21 19.110753346571126 52.38300085841584 15.309596010770399 13.196649784242634 22 21.82273984528129 52.40692062480012 16.055031690840472 9.715307839078111 23 16.784460507339116 49.700634098455154 19.21475437176145 14.300151022444279 24 17.87874790785867 52.15172950908552 16.155921201704384 13.81360138135142 25 17.803890506079085 46.57470890073485 21.640682727937033 13.980717865249032 26 19.120570710738942 46.541756354614186 21.25799999503767 13.079672939609196 27 24.05783983252006 48.0775502028419 17.457607126118862 10.40700283851918 28 26.460673241841846 46.617425164224585 16.713599792065008 10.208301801868558 29 30.1005347714073 44.751716915499514 15.958896627514116 9.188851685579063 30 33.56105505281427 46.037047272150815 12.202507545254596 8.199390129780323 31 30.601334343413143 48.72563035491448 11.121014906232437 9.552020395439943 32 28.278830309341522 53.18408168046987 11.820549044138104 6.716538966050495 33 26.796964905538385 55.78717188360549 11.078191349145236 6.337671861710891 34 23.745863580348452 57.82295389600824 11.826939719036963 6.604242804606356 35 23.615468330182367 58.487651143987804 11.054814756598104 6.842065769231724 36 19.149888686245557 60.735371540628094 11.883637679446027 8.23110209368032 37 17.82445064169283 62.33379802637451 12.727669469734254 7.114081862198407 38 17.112799033123746 63.131539335207535 12.297945200197447 7.457716431471277 39 17.605618643818318 63.73851933360215 10.922883866818335 7.7329781557612 40 18.177694693788432 63.87672689883347 10.563450315319118 7.38212809205898 41 18.82130874986664 63.41077092260357 10.43710539845724 7.330814929072561 42 20.326322747322305 60.87746849876743 10.886404043681102 7.909804710229164 43 21.606898656436044 59.649627392806494 9.738610667276989 9.004863283480482 44 20.709662653506122 58.16467059222645 10.775670345250008 10.349996409017411 45 20.938231545350355 57.127282327611205 12.59921221017233 9.335273916866104 46 22.187551488353314 56.55829096856814 11.79280694334422 9.461350599734327 47 23.825850957256712 56.13167821335775 10.374445937539166 9.668024891846377 48 24.30753215136471 55.57329550876378 10.155908997057676 9.963263342813839 49 23.49983265551721 56.05619046169307 10.112750147478403 10.331226735311322 50 22.57899206114555 56.533868263445754 10.410650820832902 10.4764888545758 51 21.68935378608594 56.43936942748069 10.885934634192203 10.985342152241165 52 23.39873526330821 54.14693442409793 11.218625256523904 11.235705056069957 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 11.0 4 22.0 5 50.0 6 78.0 7 180.0 8 282.0 9 4627.0 10 8972.0 11 19158.5 12 29345.0 13 54412.0 14 99028.0 15 118577.0 16 129906.5 17 141236.0 18 153204.5 19 165173.0 20 189498.5 21 213824.0 22 263967.0 23 314110.0 24 393124.5 25 472139.0 26 574861.5 27 677584.0 28 777188.0 29 876792.0 30 940248.0 31 1003704.0 32 1033484.5 33 1063265.0 34 1051270.5 35 1039276.0 36 1009559.5 37 979843.0 38 939369.0 39 860642.5 40 822390.0 41 802359.5 42 782329.0 43 776555.5 44 770782.0 45 794886.5 46 818991.0 47 825289.5 48 831588.0 49 814696.0 50 797804.0 51 747695.0 52 697586.0 53 618420.0 54 539254.0 55 441896.0 56 344538.0 57 269237.5 58 193937.0 59 145594.0 60 97251.0 61 76618.5 62 55986.0 63 44625.0 64 24742.5 65 16221.0 66 15171.5 67 14122.0 68 10715.5 69 7309.0 70 5141.5 71 2974.0 72 1819.5 73 665.0 74 1100.5 75 1536.0 76 1268.0 77 1000.0 78 569.0 79 138.0 80 95.5 81 53.0 82 38.5 83 24.0 84 17.5 85 11.0 86 7.0 87 3.0 88 2.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1.4912353E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.17067363225817 #Duplication Level Percentage of deduplicated Percentage of total 1 83.89123604914003 35.37749936035016 2 7.391257042395277 6.23388576933962 3 2.341963607436433 2.9628654884348347 4 1.0894937039024137 1.8377873364667525 5 0.664002795600024 1.400072259207782 6 0.44893787923747186 1.1359207671888936 7 0.3319632257198116 0.9799378994819282 8 0.27259896707056647 0.919654565825884 9 0.22267512016044158 0.8451323836478869 >10 2.8932404488072394 28.670069872684977 >50 0.35770433737545754 10.0413514631769 >100 0.0864275951002711 6.198711243673684 >500 0.005723985375486043 1.6706009480565003 >1k 0.0027752426789314677 1.7265106424641377 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.021921423131547383 0.0 0.0 0.0 0.0 12 0.03193996279460391 0.0 0.0 0.0 0.0 13 0.053338329638521836 0.0 0.0 0.0 0.0 14 0.26215178784997917 0.0 0.0 0.0 0.0 15 0.5263958008504761 0.0 0.0 0.0 0.0 16 0.7249157795553793 0.0 0.0 0.0 0.0 17 0.8900272143504113 0.0 0.0 0.0 0.0 18 1.0939118729284372 0.0 0.0 0.0 0.0 19 1.3301924920902826 0.0 0.0 0.0 0.0 20 1.5721328485182722 0.0 0.0 0.0 0.0 21 1.7917360191245473 0.0 0.0 0.0 0.0 22 2.00516310202689 0.0 0.0 0.0 0.0 23 2.211522219196394 0.0 0.0 0.0 0.0 24 2.4470786065753676 0.0 0.0 0.0 0.0 25 2.699191737212766 0.0 0.0 0.0 0.0 26 2.9741919333588736 0.0 0.0 0.0 0.0 27 3.2673582767253433 0.0 0.0 0.0 0.0 28 3.5629051967855108 0.0 0.0 0.0 0.0 29 3.8689937127963643 0.0 0.0 0.0 0.0 30 4.198820937245785 0.0 0.0 0.0 0.0 31 4.527474637972961 0.0 0.0 0.0 0.0 32 4.83970571243854 0.0 0.0 0.0 0.0 33 5.142729655071872 0.0 0.0 0.0 0.0 34 5.441394795308292 0.0 0.0 0.0 0.0 35 5.740301346139003 0.0 0.0 0.0 0.0 36 6.031603463249562 0.0 0.0 0.0 0.0 37 6.319338068244495 0.0 0.0 0.0 0.0 38 6.59895859493133 0.0 0.0 0.0 0.0 39 6.876533837416536 0.0 0.0 0.0 0.0 40 7.156409186397345 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACTCG 20 6.313897E-4 46.000004 45 GTTACTC 20 6.313897E-4 46.000004 35 ACCTTAC 20 6.313897E-4 46.000004 29 CCTTACT 25 3.4191384E-5 46.0 30 CATATCT 110 0.0 46.0 41 CCTAGAC 75 0.0 46.0 31 TTATGTC 90 0.0 46.0 18 CGATTTA 90 0.0 46.0 24 CCGCTAA 55 1.8189894E-12 46.0 46 TAACATC 60 0.0 46.0 18 CTGTTCA 25 3.4191384E-5 46.0 22 CATACTG 65 0.0 46.0 41 CTATTGG 25 3.4191384E-5 46.0 36 CGACTTG 125 0.0 46.0 34 GTACGGT 115 0.0 46.0 36 CTTACGG 65 0.0 46.0 39 CCTATAA 35 1.0206713E-7 45.999996 44 CACGTGT 225 0.0 44.97778 41 CCGGTAA 215 0.0 44.930233 15 TCCGGTA 215 0.0 44.930233 14 >>END_MODULE