##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528178_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14835816 Sequences flagged as poor quality 0 Sequence length 52 %GC 38 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.883076266246494 31.0 31.0 34.0 27.0 34.0 2 31.58366078414561 31.0 31.0 34.0 28.0 34.0 3 31.76976345621973 31.0 31.0 34.0 30.0 34.0 4 35.511816673919384 37.0 35.0 37.0 33.0 37.0 5 35.32485459512304 37.0 35.0 37.0 33.0 37.0 6 35.41673380149767 37.0 35.0 37.0 33.0 37.0 7 35.35456998118607 37.0 35.0 37.0 32.0 37.0 8 35.32864407323466 37.0 35.0 37.0 32.0 37.0 9 37.44609713412461 39.0 37.0 39.0 34.0 39.0 10 37.75109033436381 39.0 37.0 39.0 35.0 39.0 11 37.80742279359625 39.0 37.0 39.0 35.0 39.0 12 37.69407210226927 39.0 37.0 39.0 35.0 39.0 13 37.58665360907685 39.0 37.0 39.0 35.0 39.0 14 37.975205947552865 40.0 38.0 40.0 33.0 40.0 15 36.98624780733328 39.0 36.0 40.0 31.0 40.0 16 35.8521554190211 38.0 34.0 40.0 30.0 40.0 17 35.35114435228908 38.0 34.0 40.0 27.0 40.0 18 35.32860754002341 38.0 34.0 40.0 26.0 40.0 19 35.69580931712822 38.0 34.0 40.0 27.0 40.0 20 35.88546042900505 38.0 34.0 40.0 30.0 40.0 21 36.06227773383008 38.0 35.0 40.0 30.0 40.0 22 36.04337065113237 38.0 35.0 40.0 30.0 40.0 23 36.12579166525117 38.0 35.0 40.0 30.0 40.0 24 36.22886540248275 38.0 35.0 40.0 30.0 40.0 25 36.297394359703574 39.0 35.0 40.0 31.0 40.0 26 35.98095109834201 38.0 35.0 40.0 30.0 40.0 27 35.69389240200876 38.0 35.0 40.0 27.0 40.0 28 35.425365952233435 38.0 35.0 40.0 27.0 40.0 29 35.20766778180587 37.0 34.0 40.0 27.0 40.0 30 34.85348362368474 36.0 34.0 40.0 26.0 40.0 31 34.65628071957754 35.0 33.0 40.0 25.0 40.0 32 34.49946224730746 35.0 33.0 40.0 25.0 40.0 33 34.21281060644052 35.0 33.0 40.0 24.0 40.0 34 33.914216380143834 35.0 33.0 40.0 23.0 40.0 35 33.50167540497941 35.0 33.0 40.0 21.0 40.0 36 33.301786838014166 35.0 33.0 39.0 21.0 40.0 37 33.112706035178654 35.0 33.0 40.0 21.0 40.0 38 32.81567215446727 35.0 33.0 39.0 18.0 40.0 39 32.32059308365647 35.0 32.0 39.0 16.0 40.0 40 31.74489128201644 35.0 31.0 39.0 15.0 40.0 41 31.022658409891307 35.0 29.0 38.0 10.0 40.0 42 30.257116629108907 35.0 25.0 38.0 9.0 40.0 43 29.43312204734812 35.0 23.0 37.0 8.0 40.0 44 28.506119110671094 34.0 20.0 36.0 8.0 40.0 45 27.85677242155066 33.0 20.0 35.0 8.0 40.0 46 27.228458751443128 33.0 15.0 35.0 8.0 40.0 47 26.691567015929557 33.0 15.0 35.0 8.0 40.0 48 26.20738427869421 33.0 10.0 35.0 8.0 39.0 49 25.74073910056582 33.0 10.0 35.0 8.0 39.0 50 25.385526620173774 33.0 10.0 35.0 8.0 39.0 51 24.99241828019436 32.0 10.0 35.0 8.0 38.0 52 24.130791255432126 31.0 9.0 35.0 8.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 9.0 12 22.0 13 41.0 14 165.0 15 729.0 16 2709.0 17 8072.0 18 19501.0 19 37893.0 20 64606.0 21 99230.0 22 138511.0 23 185432.0 24 246578.0 25 324097.0 26 420979.0 27 531781.0 28 661888.0 29 807491.0 30 934387.0 31 949856.0 32 835832.0 33 780848.0 34 907686.0 35 1171508.0 36 1636872.0 37 2034040.0 38 1820551.0 39 214501.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.05535981303624 23.882575788214144 36.19122803895654 2.8708363597930844 2 29.3518603897487 21.595124932797766 30.66642239294421 18.386592284509327 3 17.664582790727522 22.411109709098575 35.05656176916727 24.86774573100664 4 14.201038891288487 25.70811069643894 33.12516817409976 26.96568223817281 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 100.0 0.0 0.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 100.0 0.0 11 99.5492260081953 0.27885894513655335 0.13828022671621162 0.03363481995193254 12 99.26335025993852 0.5512335822984055 0.09812739656517713 0.08728876119790108 13 96.71697869534106 2.168670735738432 0.5273387051982851 0.5870118637222247 14 60.235008306924264 26.951035251448253 5.243297706037875 7.5706587355896025 15 43.495214553752895 34.27870768955344 13.270217155564614 8.95586060112905 16 44.598301839278676 32.56494283833124 14.612927256579619 8.223828065810467 17 30.183462776836812 35.48962187182694 18.933417615856115 15.393497735480139 18 23.577307780037174 45.75163914138595 17.428188648335894 13.24286443024098 19 25.372483724521793 46.672343469344725 17.155598316937876 10.799574489195605 20 18.432393607469923 50.81185962403416 18.954164705197208 11.801582063298708 21 19.124360938420914 52.41089536295138 15.272075361409174 13.192668337218524 22 21.82167802566438 52.35818508398864 16.12693902377867 9.69319786656831 23 16.753712771848882 49.676101402174304 19.278097005247304 14.292088820729509 24 17.91478810467857 52.19067828827211 16.05803819621381 13.836495410835509 25 17.778846812335768 46.55156143753737 21.662030588678103 14.007561161448754 26 19.01525335714598 46.52896072585425 21.30502292560113 13.150762991398654 27 24.034208836237923 47.970681221713726 17.52678787604268 10.46832206600567 28 26.44398528533921 46.60743298514891 16.710789618852107 10.237792110659772 29 30.051343316741054 44.71187833550915 16.02778707959171 9.208991268158083 30 33.54525292036515 45.9421578159233 12.293088563514134 8.219500700197415 31 30.502703727250324 48.714024223541195 11.211705510502421 9.571566538706062 32 28.263541418955317 53.22090810508839 11.814894441937 6.700656034019295 33 26.89619499190338 55.83372023486945 10.935866284672175 6.334218488554995 34 23.785331389928267 57.90170220498825 11.705045411725248 6.607920993358235 35 23.468645068124328 58.45621164349841 11.239941234105357 6.835202054271905 36 19.123909328613944 60.75073322559407 11.913122945175378 8.212234500616617 37 17.834684657722903 62.34573817847296 12.72000138044311 7.099575783361023 38 17.110619328252653 63.17633623927394 12.256447505145655 7.456596927327759 39 17.61448106393339 63.79655153447575 10.862422397258095 7.726545004332758 40 18.186286484006004 63.85650105123979 10.57157894112464 7.385633523629573 41 18.83497341838157 63.42364316192651 10.427515412701263 7.313868006990651 42 20.328062844672647 60.864087287143484 10.887281157976076 7.920568710207784 43 21.681827275291095 59.609137778468 9.709745658749071 8.999289287491838 44 20.657771705985027 58.11694483134598 10.87646274394344 10.348820718725548 45 20.89832470286771 57.10585113754444 12.676977120773133 9.318847038814718 46 22.124849755483623 56.577258709598446 11.812568988453348 9.485322546464582 47 23.933129124815245 56.173977892419266 10.238540300041468 9.654352682724024 48 24.352270208797414 55.636595924349564 10.050670620342016 9.960463246511011 49 23.329063935546248 56.01546959061773 10.341830877384837 10.313635596451183 50 22.59642476018845 56.52257348028582 10.423558771556616 10.457442987969115 51 21.626083796132278 56.45197406061116 10.943927856748829 10.978014286507733 52 23.60961473234772 53.94673269067236 11.288020827435444 11.155631749544481 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 7.5 4 15.0 5 48.0 6 81.0 7 170.5 8 260.0 9 4553.5 10 8847.0 11 18829.5 12 28812.0 13 53510.5 14 97586.5 15 116964.0 16 128107.0 17 139250.0 18 150721.5 19 162193.0 20 186140.5 21 210088.0 22 260298.0 23 310508.0 24 389907.0 25 469306.0 26 571824.0 27 674342.0 28 774126.5 29 873911.0 30 938238.0 31 1002565.0 32 1031174.0 33 1059783.0 34 1048418.0 35 1037053.0 36 1007693.0 37 978333.0 38 936933.5 39 857013.5 40 818493.0 41 799605.5 42 780718.0 43 775049.0 44 769380.0 45 791843.5 46 814307.0 47 821076.5 48 827846.0 49 811098.5 50 794351.0 51 743491.0 52 692631.0 53 612649.0 54 532667.0 55 436602.5 56 340538.0 57 265929.5 58 191321.0 59 143740.5 60 96160.0 61 75429.0 62 54698.0 63 43771.5 64 24384.0 65 15923.0 66 14903.0 67 13883.0 68 10617.0 69 7351.0 70 5248.5 71 3146.0 72 1928.5 73 711.0 74 1111.0 75 1511.0 76 1292.0 77 1073.0 78 596.0 79 119.0 80 84.5 81 50.0 82 40.5 83 31.0 84 18.5 85 6.0 86 4.5 87 3.0 88 1.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1.4835816E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.002158573159996 #Duplication Level Percentage of deduplicated Percentage of total 1 84.62592852094951 36.39097597658774 2 6.9830766506988455 6.005747389237655 3 2.2049655850482277 2.8445483920981314 4 1.075933120659605 1.8506978667487688 5 0.642969797832815 1.3824544602079667 6 0.4381695329938154 1.1305341443836503 7 0.31639155918426476 0.9523863999475761 8 0.2526073111409599 0.86901277203385 9 0.20639163694545917 0.798775731009243 >10 2.821528595673327 28.59952400707354 >50 0.34083947930247355 9.740293906093484 >100 0.08305550749393689 6.121150895763893 >500 0.005532074718754273 1.6553528169980656 >1k 0.0026106273580585875 1.658545241816499 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.022310872553285913 0.0 0.0 0.0 0.0 12 0.03294055412927742 0.0 0.0 0.0 0.0 13 0.053957261265575145 0.0 0.0 0.0 0.0 14 0.26178539825514147 0.0 0.0 0.0 0.0 15 0.5239550018684513 0.0 0.0 0.0 0.0 16 0.7196840402981541 0.0 0.0 0.0 0.0 17 0.8801672924495694 0.0 0.0 0.0 0.0 18 1.0824750050822955 0.0 0.0 0.0 0.0 19 1.3164628086517116 0.0 0.0 0.0 0.0 20 1.556806851743106 0.0 0.0 0.0 0.0 21 1.7749276480646565 0.0 0.0 0.0 0.0 22 1.9872786235688014 0.0 0.0 0.0 0.0 23 2.194722555200199 0.0 0.0 0.0 0.0 24 2.425582792345227 0.0 0.0 0.0 0.0 25 2.674392834206086 0.0 0.0 0.0 0.0 26 2.9449138490258977 0.0 0.0 0.0 0.0 27 3.2354944278090265 0.0 0.0 0.0 0.0 28 3.5289936192252584 0.0 0.0 0.0 0.0 29 3.831134060977839 0.0 0.0 0.0 0.0 30 4.1565290375669255 0.0 0.0 0.0 0.0 31 4.483770896053173 0.0 0.0 0.0 0.0 32 4.7988058088614745 0.0 0.0 0.0 0.0 33 5.096881762351326 0.0 0.0 0.0 0.0 34 5.389167673689132 0.0 0.0 0.0 0.0 35 5.680105496050908 0.0 0.0 0.0 0.0 36 5.969978328121622 0.0 0.0 0.0 0.0 37 6.254829528756625 0.0 0.0 0.0 0.0 38 6.528309598878821 0.0 0.0 0.0 0.0 39 6.805065525212769 0.0 0.0 0.0 0.0 40 7.077541269047823 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGAC 70 0.0 46.000004 31 GATACGT 20 6.3138956E-4 46.000004 25 CTACGTG 20 6.3138956E-4 46.000004 21 CTAAACT 20 6.3138956E-4 46.000004 14 TAGGGTC 20 6.3138956E-4 46.000004 10 TACGTGA 20 6.3138956E-4 46.000004 23 CCCTAGT 50 1.6370905E-11 46.0 36 CCCTACA 85 0.0 46.0 33 TTGCTAC 25 3.4191376E-5 46.0 21 CGATTCA 75 0.0 46.0 28 CTAGTTC 45 3.110472E-10 46.0 29 TTAAGCG 115 0.0 46.0 23 CATACTA 25 3.4191376E-5 46.0 17 TTAACGG 85 0.0 46.0 31 CACTTGA 95 0.0 46.0 26 ATTTCAC 250 0.0 45.08 31 ATAACCT 160 0.0 44.562504 31 GACGTAC 140 0.0 44.357143 19 CCTAAGG 140 0.0 44.357143 46 TACGTCA 135 0.0 44.296295 34 >>END_MODULE