##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528177_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14210195 Sequences flagged as poor quality 0 Sequence length 59 %GC 37 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.45403078564369 31.0 30.0 33.0 27.0 34.0 2 31.24367146263651 31.0 31.0 34.0 28.0 34.0 3 31.443366611084507 31.0 31.0 34.0 30.0 34.0 4 35.236356010596616 35.0 35.0 37.0 33.0 37.0 5 34.765097593664265 35.0 35.0 37.0 32.0 37.0 6 35.00105579128225 36.0 35.0 37.0 32.0 37.0 7 34.81458649934079 37.0 35.0 37.0 32.0 37.0 8 34.93169643344092 37.0 35.0 37.0 32.0 37.0 9 37.06983577635634 39.0 37.0 39.0 33.0 39.0 10 37.444285739921234 39.0 37.0 39.0 35.0 39.0 11 37.4090861525827 39.0 37.0 39.0 35.0 39.0 12 37.37220931873208 39.0 37.0 39.0 35.0 39.0 13 37.26527468483015 39.0 37.0 39.0 35.0 39.0 14 37.273965980058684 40.0 37.0 40.0 32.0 40.0 15 36.18188385169943 38.0 35.0 40.0 29.0 40.0 16 34.960960774992884 37.0 33.0 39.0 27.0 40.0 17 34.60944139049464 37.0 33.0 40.0 25.0 40.0 18 34.67747852861977 37.0 33.0 40.0 25.0 40.0 19 35.100307420130406 38.0 33.0 40.0 27.0 40.0 20 35.19554397388635 38.0 33.0 40.0 27.0 40.0 21 35.30726939355864 38.0 34.0 40.0 27.0 40.0 22 35.32497787679902 38.0 34.0 40.0 27.0 40.0 23 35.31222287941861 38.0 34.0 40.0 27.0 40.0 24 35.382328110205385 38.0 34.0 40.0 27.0 40.0 25 35.46372931546682 38.0 34.0 40.0 27.0 40.0 26 35.09976590750514 38.0 33.0 40.0 25.0 40.0 27 34.81106177642179 38.0 33.0 40.0 25.0 40.0 28 34.49328133780008 37.0 33.0 40.0 24.0 40.0 29 34.199528226037714 36.0 33.0 40.0 24.0 40.0 30 33.92563719217083 35.0 33.0 40.0 24.0 40.0 31 33.67586806514618 35.0 33.0 39.0 23.0 40.0 32 33.39060786991312 35.0 32.0 39.0 22.0 40.0 33 32.86423120864985 35.0 31.0 39.0 21.0 40.0 34 32.50038264781025 35.0 31.0 38.0 20.0 40.0 35 32.264676733852 35.0 31.0 38.0 18.0 40.0 36 31.90765235804294 35.0 30.0 38.0 18.0 40.0 37 31.887080296927664 35.0 30.0 38.0 17.0 40.0 38 31.710312420061793 35.0 30.0 38.0 16.0 40.0 39 31.156619877489366 35.0 29.0 38.0 15.0 40.0 40 30.674451617307152 35.0 26.0 38.0 12.0 40.0 41 29.98516607266825 34.0 24.0 37.0 10.0 40.0 42 29.338861148633075 34.0 23.0 37.0 9.0 40.0 43 28.565160154382117 33.0 21.0 36.0 8.0 40.0 44 27.74520272241162 33.0 18.0 35.0 8.0 40.0 45 27.162645832798212 33.0 18.0 35.0 8.0 40.0 46 26.52950328971559 33.0 15.0 35.0 8.0 39.0 47 25.86645714573234 33.0 12.0 35.0 8.0 39.0 48 25.395556640848348 31.0 10.0 35.0 8.0 38.0 49 24.99946024667501 31.0 10.0 35.0 8.0 38.0 50 24.465481860030774 30.0 10.0 35.0 8.0 38.0 51 24.055483193580383 29.0 10.0 35.0 8.0 37.0 52 23.426411741710794 27.0 9.0 35.0 8.0 36.0 53 23.21983132532664 27.0 9.0 35.0 8.0 36.0 54 22.902858687020128 26.0 9.0 35.0 8.0 35.0 55 22.580094009969603 25.0 9.0 35.0 8.0 35.0 56 22.028055843005674 23.0 9.0 34.0 8.0 35.0 57 21.386914254167518 22.0 8.0 33.0 8.0 35.0 58 20.784153137940752 20.0 8.0 33.0 8.0 35.0 59 19.930980398228172 18.0 8.0 33.0 6.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 18.0 12 40.0 13 146.0 14 698.0 15 3122.0 16 11228.0 17 29402.0 18 60865.0 19 105809.0 20 162344.0 21 226964.0 22 303397.0 23 395768.0 24 505538.0 25 628912.0 26 761823.0 27 877931.0 28 899776.0 29 778160.0 30 671847.0 31 691090.0 32 786413.0 33 904757.0 34 1046472.0 35 1181744.0 36 1348598.0 37 1160802.0 38 634027.0 39 32503.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.403413535141496 24.537946171745002 35.155288157551674 2.9033521355618275 2 28.788415641023928 22.238589970088377 30.307536244224657 18.665458144663038 3 17.597949922573193 22.808849561881452 34.70678621933056 24.886414296214795 4 14.235934130390188 26.016441012948803 33.02896265674046 26.71866219992055 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 100.0 0.0 0.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 100.0 0.0 11 99.51016857967115 0.30870793820915193 0.14168700711003615 0.039436475009667356 12 99.23416955221234 0.569689578503321 0.1019620068549376 0.09417886242940368 13 96.650095230924 2.2164157493968237 0.5368469609319224 0.5966420587472585 14 59.04031577328812 27.715186174433214 5.486082351438528 7.758415700840136 15 42.75637315321852 34.769389160388016 13.477485706564899 8.996751979828566 16 44.22943527516688 32.47281969037019 14.849212132556943 8.44853290190599 17 29.89941376596169 35.321035355250224 19.059168435056662 15.72038244373142 18 23.448812630650036 45.57088766199197 17.494341210658966 13.485958496699023 19 25.414309937337244 46.20562209033726 17.454911772850405 10.925156199475094 20 18.45943704502296 50.1812536703402 19.442583300229167 11.916725984407673 21 19.284555912146175 51.77324449101508 15.567238873217432 13.374960723621315 22 22.0280439501358 51.639171735503986 16.508126735769636 9.824657578590584 23 16.85914936424166 48.97777264844008 19.759158829277148 14.403919158041113 24 17.880824295514593 51.665420495637115 16.416861274598975 14.03689393424932 25 17.925200885702132 45.746303974013024 22.147627108565366 14.180868031719479 26 19.040702819349065 45.82396652544177 21.744050662218218 13.391279992990949 27 24.172926550269015 47.45825092477619 17.86146495526627 10.507357569688523 28 26.56233781450571 46.05563118591969 17.08905472444256 10.292976275132045 29 30.331997555276335 44.013034303892375 16.280304387096727 9.374663753734556 30 33.90130818049998 45.360053116793964 12.431039827391531 8.307598875314518 31 30.679051202323404 48.15951505239724 11.43296063143398 9.728473113845377 32 28.470671936592 52.83828265551599 12.023628106440482 6.667417301451528 33 26.96271233434868 55.47130071051101 11.29194919563032 6.274037759509985 34 23.93609658417777 57.589104160780344 11.96600750376754 6.50879175127435 35 23.770961622975616 58.259608682357985 11.261471077631235 6.707958617035163 36 19.131644569268754 60.462836716878265 12.231366283150935 8.174152430702042 37 17.8035558273479 62.39740552469547 12.791027850075245 7.008010797881379 38 17.022764290004467 63.38409852926016 12.226503577185253 7.3666336035501265 39 17.453856192684196 64.04661582758013 10.875311704026581 7.624216275709095 40 17.891626399215493 64.39915145429039 10.434381794197757 7.274840352296362 41 18.37856552988893 64.08350483578867 10.407204123518362 7.13072551080404 42 19.77595662832213 61.65172258368023 10.805777119877666 7.766543668119966 43 21.00872648123407 60.502392824306774 9.581093011038906 8.90778768342025 44 19.814893462053124 59.212734237637136 10.634878690967998 10.337493609341744 45 19.900937320001592 58.36971273089496 12.536485248794968 9.192864700308476 46 21.161884126150273 57.87125370200761 11.604274255209024 9.362587916633093 47 22.962119802015383 57.42983118810122 10.067856211684639 9.540192798198758 48 23.216148687614773 57.10227762532464 9.72717826884149 9.954395418219104 49 22.53825510487365 57.37584881840115 9.852088588509869 10.233807488215326 50 21.313669516850403 58.013517759608504 10.21116881225064 10.46164391129045 51 20.5962409382841 57.82553300640843 10.70216137076233 10.876064684545145 52 20.22718196337207 56.99028760689069 11.453340365842973 11.329190063894268 53 19.623249364276845 57.11672499919952 11.21335773365531 12.046667902868329 54 19.160152270957575 56.74986163103321 11.728262701532245 12.361723396476966 55 19.41723530183787 55.324173946944434 12.108004147726332 13.150586603491366 56 19.49268113491757 53.78668624885161 12.836481132032318 13.884151484198492 57 19.52966162674052 51.84106903529473 13.740282944744953 14.888986393219797 58 20.10132865875521 49.56379557071525 14.50518448198635 15.829691288543192 59 21.633242893570426 45.65051359252987 16.173451525471677 16.542791988428025 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 5.0 4 32.5 5 55.0 6 120.5 7 186.0 8 3344.0 9 14106.0 10 21710.0 11 39313.5 12 56917.0 13 68925.0 14 83652.5 15 86372.0 16 84125.0 17 81878.0 18 80934.5 19 87599.0 20 95207.0 21 116745.5 22 138284.0 23 181891.5 24 225499.0 25 299392.0 26 469840.5 27 566396.0 28 673136.5 29 779877.0 30 868590.0 31 1012942.5 32 1068582.0 33 1083474.5 34 1098367.0 35 1071761.5 36 1003056.5 37 960957.0 38 910546.0 39 860135.0 40 820241.0 41 780347.0 42 747747.5 43 689855.0 44 664562.0 45 653119.0 46 641676.0 47 624490.5 48 582640.0 49 557975.0 50 526135.5 51 494296.0 52 443210.5 53 344716.5 54 297308.0 55 245003.5 56 192699.0 57 153245.5 58 90109.0 59 66426.0 60 52664.0 61 38902.0 62 31653.5 63 24405.0 64 18158.0 65 11053.5 66 10196.0 67 8276.5 68 6357.0 69 6347.5 70 4108.0 71 1878.0 72 1327.0 73 776.0 74 1329.0 75 1033.5 76 185.0 77 120.0 78 55.0 79 38.0 80 21.0 81 20.0 82 12.5 83 6.0 84 4.5 85 3.0 86 1.5 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 1.4210195E7 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.984787654963135 #Duplication Level Percentage of deduplicated Percentage of total 1 91.69799441448137 55.921827177531426 2 3.800797449959213 4.635816508105759 3 1.157080390911287 2.1169290581833975 4 0.56649849077953 1.381911606681869 5 0.3604841452011815 1.0992024524037476 6 0.2518154027443622 0.9214145318768371 7 0.19839063689554276 0.8469167604665299 8 0.15232759598447612 0.7431732876083433 9 0.12788369251169435 0.7019063849122452 >10 1.5175865989814366 20.254455521451238 >50 0.13094432823477828 5.276849754579857 >100 0.03378660267726005 3.747984905523454 >500 0.003226052357812281 1.3475158766764868 >1k 0.001184198280094234 1.004096173998793 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.019837869923671 0.0 0.0 0.0 0.0 12 0.029035491771928535 0.0 0.0 0.0 0.0 13 0.04870446886900567 0.0 0.0 0.0 0.0 14 0.23679478008570606 0.0 0.0 0.0 0.0 15 0.4655601137070955 0.0 0.0 0.0 0.0 16 0.6405190076561229 0.0 0.0 0.0 0.0 17 0.7806085701146255 0.0 0.0 0.0 0.0 18 0.9575801035805631 0.0 0.0 0.0 0.0 19 1.1642908489292372 0.0 0.0 0.0 0.0 20 1.3705723250103183 0.0 0.0 0.0 0.0 21 1.5566359223078923 0.0 0.0 0.0 0.0 22 1.7372034655400577 0.0 0.0 0.0 0.0 23 1.916222824528446 0.0 0.0 0.0 0.0 24 2.118303091548005 0.0 0.0 0.0 0.0 25 2.329186897153769 0.0 0.0 0.0 0.0 26 2.5614497197258728 0.0 0.0 0.0 0.0 27 2.8082513997872653 0.0 0.0 0.0 0.0 28 3.0643281109091043 0.0 0.0 0.0 0.0 29 3.329342067438202 0.0 0.0 0.0 0.0 30 3.6078674500948087 0.0 0.0 0.0 0.0 31 3.89150184075588 0.0 0.0 0.0 0.0 32 4.1607170063465 0.0 0.0 0.0 0.0 33 4.423591653738741 0.0 0.0 0.0 0.0 34 4.6831940026157275 0.0 0.0 0.0 0.0 35 4.943338215978035 0.0 0.0 0.0 0.0 36 5.1982749005203654 0.0 0.0 0.0 0.0 37 5.45605461431036 0.0 0.0 0.0 0.0 38 5.702835182768428 0.0 0.0 0.0 0.0 39 5.949904276471927 0.0 0.0 0.0 7.037201108077687E-6 40 6.1974730114541 0.0 0.0 0.0 7.037201108077687E-6 41 6.449622964357632 0.0 0.0 0.0 7.037201108077687E-6 42 6.711470180388095 0.0 0.0 0.0 7.037201108077687E-6 43 6.990825952775454 0.0 0.0 0.0 7.037201108077687E-6 44 7.278119688012726 0.0 7.037201108077687E-6 0.0 7.037201108077687E-6 45 7.5746954915115525 0.0 7.037201108077687E-6 0.0 7.037201108077687E-6 46 7.878231086906267 0.0 7.037201108077687E-6 0.0 2.111160332423306E-5 47 8.187269773567499 0.0 7.037201108077687E-6 0.0 2.111160332423306E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCATTGA 65 0.0 53.000004 50 CTCACGT 205 0.0 50.414635 39 CGATTCA 85 0.0 49.882355 28 CTAATTA 80 0.0 49.6875 53 TTACAGG 385 0.0 49.55844 47 CCATTTA 75 0.0 49.466667 50 TCGCTAC 185 0.0 48.7027 51 CGAACTT 60 0.0 48.583332 47 TGCATTA 120 0.0 48.583332 51 TATTGAC 170 0.0 48.323532 24 TAACCTA 170 0.0 48.323532 32 TCACGAG 110 0.0 48.181816 16 TTTACGA 55 1.0913936E-11 48.181816 51 TACTCCA 110 0.0 48.181816 18 TCACCGT 145 0.0 47.51724 32 ATTAAGT 190 0.0 47.421055 40 CTACATT 185 0.0 47.27027 36 CTAATTG 90 0.0 47.11111 21 TCACGTG 220 0.0 46.977272 40 TGGGCGC 12405 0.0 46.890366 10 >>END_MODULE