##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528169_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1301246 Sequences flagged as poor quality 0 Sequence length 52 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.916247965411614 31.0 31.0 34.0 28.0 34.0 2 31.695315105675636 31.0 31.0 34.0 30.0 34.0 3 31.95587613717929 31.0 31.0 34.0 30.0 34.0 4 35.63164459295168 37.0 35.0 37.0 33.0 37.0 5 35.60394575660559 37.0 35.0 37.0 33.0 37.0 6 35.79726738833395 37.0 35.0 37.0 35.0 37.0 7 35.58802486232427 37.0 35.0 37.0 33.0 37.0 8 35.54240089883081 37.0 35.0 37.0 33.0 37.0 9 37.34701970265422 39.0 37.0 39.0 34.0 39.0 10 36.81706917831063 39.0 37.0 39.0 32.0 39.0 11 37.465775110932135 39.0 37.0 39.0 35.0 39.0 12 37.5464062905861 39.0 37.0 39.0 35.0 39.0 13 37.44824191582529 39.0 37.0 39.0 35.0 39.0 14 37.802563081846166 40.0 38.0 40.0 33.0 40.0 15 36.963491146178356 39.0 36.0 40.0 31.0 40.0 16 36.36021244253585 38.0 35.0 40.0 31.0 40.0 17 36.006234024926876 38.0 35.0 40.0 30.0 40.0 18 36.091181067991755 38.0 35.0 40.0 30.0 40.0 19 36.40145137814064 39.0 35.0 40.0 31.0 40.0 20 36.52739989210342 39.0 35.0 40.0 31.0 40.0 21 36.580924744437255 39.0 35.0 40.0 31.0 40.0 22 36.59064773301897 39.0 35.0 40.0 31.0 40.0 23 36.6820739506596 39.0 35.0 40.0 31.0 40.0 24 36.75793816080895 39.0 35.0 40.0 31.0 40.0 25 36.7911332676527 39.0 35.0 40.0 31.0 40.0 26 36.50788321347385 39.0 35.0 40.0 31.0 40.0 27 36.246293168240285 39.0 35.0 40.0 30.0 40.0 28 36.056801711590275 38.0 35.0 40.0 30.0 40.0 29 35.92690928540799 38.0 35.0 40.0 30.0 40.0 30 35.69360828006388 38.0 35.0 40.0 30.0 40.0 31 35.666551904866566 38.0 35.0 40.0 30.0 40.0 32 35.697708196605404 38.0 35.0 40.0 30.0 40.0 33 35.591658302888156 38.0 35.0 40.0 30.0 40.0 34 35.39435663971302 38.0 34.0 40.0 29.0 40.0 35 35.08970940160431 37.0 34.0 40.0 26.0 40.0 36 34.94531625841693 37.0 34.0 40.0 26.0 40.0 37 34.70536393579692 37.0 34.0 40.0 25.0 40.0 38 34.33933860315421 36.0 33.0 40.0 24.0 40.0 39 34.01087803535996 36.0 33.0 40.0 23.0 40.0 40 33.58174780172235 35.0 33.0 40.0 21.0 40.0 41 33.000565611729066 35.0 33.0 40.0 18.0 40.0 42 32.398075383132785 35.0 32.0 39.0 15.0 40.0 43 31.818206549722344 35.0 31.0 39.0 10.0 40.0 44 31.10057206708032 35.0 30.0 39.0 10.0 40.0 45 30.69772126100676 35.0 28.0 38.0 9.0 40.0 46 30.24545704655384 35.0 26.0 38.0 8.0 40.0 47 29.810152730536732 35.0 24.0 38.0 8.0 40.0 48 29.416059684333323 35.0 23.0 38.0 8.0 40.0 49 28.951652493072025 35.0 22.0 37.0 8.0 40.0 50 28.63414834704583 34.0 20.0 37.0 8.0 40.0 51 28.24298480072177 34.0 20.0 37.0 8.0 40.0 52 27.170375931991337 33.0 15.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 2.0 14 12.0 15 32.0 16 92.0 17 322.0 18 805.0 19 1652.0 20 2995.0 21 4750.0 22 7214.0 23 10186.0 24 13841.0 25 18884.0 26 25349.0 27 32431.0 28 41892.0 29 52891.0 30 63394.0 31 67315.0 32 64266.0 33 68221.0 34 88403.0 35 129146.0 36 127123.0 37 192497.0 38 240902.0 39 46627.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.154648698247684 21.788040078509365 35.885912425475276 8.171398797767678 2 20.188035160146505 23.675384977168036 36.59285023738786 19.543729625297598 3 21.47779897113997 23.188620752724695 35.70792916942685 19.625651106708496 4 20.345115374033814 24.89152704407929 32.63548936941977 22.127868212467128 5 0.0 100.0 0.0 0.0 6 0.0 0.0 0.0 100.0 7 0.0 100.0 0.0 0.0 8 0.0 100.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 100.0 0.0 0.0 11 99.3028220643906 0.6015004080704186 0.06570625385207716 0.02997127368691239 12 98.76479927700066 1.0473807412280232 0.11504358130591755 0.07277640046540008 13 97.06934737935794 1.9822539320005594 0.5912025858292744 0.35719610281222763 14 58.607211856943266 27.995475106167472 6.566782914222215 6.830530122667043 15 36.24864168650663 32.21404715172996 17.372349271390654 14.164961890372766 16 39.583983351341715 25.564497412480037 19.508071494552144 15.343447741626104 17 23.034691365045504 28.56054888929534 24.061553311210947 24.343206434448213 18 20.559832652703637 38.96619086629276 25.609608021849827 14.864368459153765 19 26.063788092336114 37.834736859901966 24.980288123844378 11.121186923917538 20 20.675183631688395 38.00949244032258 26.748209024273656 14.56711490371536 21 26.15362506397714 37.2573671696205 16.64558430919288 19.943423457209477 22 23.983781698464394 44.82073335864241 15.936341014688999 15.259143928204196 23 18.640979491963854 44.34249941978688 18.87391008310496 18.1426110051443 24 16.833173742705068 48.752349671007636 15.946024041572462 18.468452544714836 25 21.031534390883813 42.62914160735172 18.543227030092694 17.79609697167177 26 18.401132453048845 42.29868910259859 17.408699046913497 21.89147939743907 27 19.936660708274992 48.895981236445685 13.599119613047803 17.568238442231525 28 20.794069683979817 45.25739176143481 14.752552553475667 19.195986001109706 29 22.05632140271709 43.22480145952418 13.740215147635421 20.978661990123314 30 23.55926550398618 44.88159809905275 13.06271066347178 18.496425733489286 31 20.00444189645924 48.212866744643215 12.412948819823463 19.369742539074085 32 19.287974756502614 53.658109227617224 12.411949777367232 14.641966238512932 33 23.593386646337432 50.34651403347253 13.44872529867527 12.611374021514763 34 20.3411960536286 51.057294316370616 13.886766991022451 14.714742638978334 35 21.78926966922473 51.423328102449496 12.807416891195055 13.979985337130717 36 21.565330460189696 50.56768666339801 16.554056650318234 11.312926226094067 37 18.320210014094187 52.044501961965686 16.57572818667646 13.059559837263668 38 14.981563824211563 56.768435791541336 16.637899367221877 11.61210101702522 39 17.495000945247863 56.35268043091006 14.194395218121707 11.957923405720363 40 20.513723000877622 54.5228188981945 12.833238296217624 12.130219804710254 41 22.008521063657447 52.70732820696471 12.43100843345532 12.853142295922524 42 20.34227194550454 51.581714756471875 12.028778570693014 16.047234727330572 43 22.005447086869047 49.54558938125459 13.201193317789258 15.247770214087113 44 20.447709349346706 48.18435560993079 14.841621030919598 16.52631400980291 45 19.892472291941722 47.457513798313315 16.272480376500678 16.37753353324429 46 21.853823181781156 45.39710400646765 13.988438773298823 18.760634038452377 47 24.592736500246687 43.66706986995541 13.577217528430443 18.16297610136746 48 24.787703478051036 43.33254434595764 14.465750519117831 17.41400165687349 49 23.016631751413644 45.19452893611201 15.273207372011132 16.51563194046322 50 23.00802461640612 46.118105262187164 14.134990616685853 16.73887950472086 51 21.757530858884486 43.76605192254193 16.731194562749856 17.745222655823724 52 24.513120501427093 40.53668560748698 16.2351315585216 18.71506233256433 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 6.5 2 13.0 3 27.5 4 42.0 5 110.0 6 178.0 7 1632.0 8 3086.0 9 4648.0 10 6210.0 11 5791.5 12 5373.0 13 6835.5 14 8742.5 15 9187.0 16 10813.0 17 12439.0 18 16085.0 19 19731.0 20 26897.0 21 34063.0 22 45845.0 23 57627.0 24 69485.0 25 81343.0 26 82824.5 27 84306.0 28 78681.0 29 73056.0 30 65578.5 31 58101.0 32 52574.0 33 47047.0 34 42947.0 35 38847.0 36 39555.5 37 40264.0 38 41965.5 39 46145.5 40 48624.0 41 51683.5 42 54743.0 43 53772.0 44 52801.0 45 55171.0 46 57541.0 47 58079.5 48 58618.0 49 55637.0 50 52656.0 51 53997.0 52 55338.0 53 59688.0 54 64038.0 55 69333.5 56 74629.0 57 63699.5 58 52770.0 59 42074.5 60 31379.0 61 28550.5 62 25722.0 63 20001.0 64 14719.0 65 15158.0 66 12648.0 67 10138.0 68 6355.5 69 2573.0 70 1706.5 71 840.0 72 3580.5 73 6321.0 74 3246.0 75 171.0 76 97.0 77 23.0 78 13.5 79 4.0 80 2.5 81 1.0 82 0.5 83 0.0 84 0.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1301246.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.51446129635176 #Duplication Level Percentage of deduplicated Percentage of total 1 87.10482406068553 32.67690550950117 2 5.773377571900349 4.33170298940562 3 1.8224867693514206 2.051088281158411 4 0.9179047206258857 1.3773880446263347 5 0.5903281479390179 1.1072921229002652 6 0.4082524797296805 0.9189223109975239 7 0.3385968268049837 0.8891594287970157 8 0.26505759804858076 0.7954794402637957 9 0.23190005091870722 0.7829644936330661 >10 2.1910131834711932 16.897059091110464 >50 0.15989660130376263 4.048689587015202 >100 0.13001512618074873 11.547955809247938 >500 0.048008754932827406 12.96937229222391 >1k 0.01833810810738901 9.606020599119319 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCCCACAATAGGGGCGGCACCGCCGCCTACGCCGGGCACGTCGCCAAGTACG 2628 0.20196027499796348 No Hit CTTGACAATAGGGAGCTCGGGCTGCTCGTCCGCTCGGCCTCTCCCCCCAACC 2570 0.19750300865478165 No Hit GTCAACAATAGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTTTTC 2367 0.1819025764536452 No Hit AATCACAATAGGGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCACCGACTG 2339 0.1797507927017643 No Hit CAGGACAATAGGGATGAACAGTTGCCCATACTGGGCAACCGCCCTAGAGAGC 2218 0.17045201291685047 No Hit TTCGACAATAGGGGCCTTGGCCTGGCCTTAGCAGAGAGTATCTGTTGCAGTC 2185 0.16791598206641942 No Hit GTTCACAATAGGGCTCTTTCGAGTCTTGGCTCCAAGATGACCAAAAAAAGAA 2177 0.16730118670873914 No Hit TATGACAATAGGGCTTTTCTGCCTCCTCTGCCGCCATGGCGCCTGTGAAAAA 2084 0.16015419067570622 No Hit TATCACAATAGGGGCCCCTTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGA 2074 0.15938569647860587 No Hit GGTCACAATAGGGATTGATACCACATAGAAAGCATGCAGCCATAGACTTCTG 2018 0.1550821289748441 No Hit GTGGACAATAGGGGAGTTTTCACAATAGGGGAGCCCACTTGGGTGGATTTTT 1983 0.152392399284993 No Hit TGTTACAATAGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGC 1960 0.15062486263166228 No Hit GAGAACAATAGGGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCACCGACTG 1866 0.1434010171789193 No Hit CCGGACAATAGGGGGGTGGCTCACGCCTGTAATCCCAGCACTTTGGTTGGCC 1856 0.14263252298181897 No Hit AGCCACAATAGGGGCTTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCG 1848 0.1420177276241387 No Hit GGTGACAATAGGGGATGAAAGCGTTGAAGGCTAAGTTCATTAAAATGACTTC 1821 0.13994279329196785 No Hit CCGCACAATAGGGGGGTGGTGGTGGCGTACGCCTTTAGTCCCAGCACTTGGG 1733 0.13318004435748507 No Hit ACGTACAATAGGGGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTC 1652 0.12695524136097247 No Hit GCGCACAATAGGGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCACCGACTG 1638 0.12587934948503204 No Hit CTAGACAATAGGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCACCGACTGC 1621 0.1245729093499615 No Hit TTGTACAATAGGGGTCTGACCAGAGGCTCCTTGGGGCTCCCTGGACAGAGTC 1618 0.1243423610908314 No Hit TGCTACAATAGGGACACGCCTGTAACCCCAGCACTTTGGGAGGTGGGTAGAT 1597 0.12272852327692074 No Hit TCTTACAATAGGGGCCTTTCCAGCCTCCGCCTCGGACCCTGCAGCCGCCGCG 1587 0.12196002907982043 No Hit GACTACAATAGGGCTTTCGGCCGCCGCAGCCATCTTCCAGTAACTCGCCAAA 1564 0.12019249242648969 No Hit CTAGACAATAGGGCGAGCAGGAGATGGCCACTGCCGCATCCTCTTCCTCCCT 1507 0.11581207550301786 No Hit TTTGACAATAGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCACCGACTGCT 1492 0.1146593342073674 No Hit AAGAACAATAGGGACAAAGTGAGACTTCATCTCTACAAAAAATTCAAAAAAT 1469 0.11289179755403667 No Hit GATGACAATAGGGGCTTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCG 1462 0.11235385161606644 No Hit TAACACAATAGGGGCTCTTTCCTTTTGCGGCCATCGGTGGATCGCAGCCGCC 1434 0.11020206786418556 No Hit TGTTACAATAGGGCTTCCTGTCCCGGCCGCCATCGGAGAGCATCAGCCATGG 1419 0.10904932656853508 No Hit ATTAACAATAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 1394 0.10712809107578428 No Hit CTGGACAATAGGGGAGTTACAACAATAGGGGATCTTTCCATCGGTGACCAGC 1394 0.10712809107578428 No Hit CTTAACAATAGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCG 1390 0.10682069339694417 No Hit ATTAACAATAGGGCTCTTCGGACTTGGGCTTGGGTTCCGGCGACATGGCTAA 1366 0.1049763073239034 No Hit GTCTACAATAGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCCTCCT 1364 0.10482260848448334 No Hit GCATACAATAGAGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCG 1355 0.10413096370709306 No Hit GTGGACAATAGGGGGTTCCCGGCAGCCCCCGCGGCGGCCGCTGAAGGTGAGC 1355 0.10413096370709306 No Hit TGTGACAATAGGGGGGTGGTGGTGGCGTACGCCTTTAGTCCCAGCACTTGGG 1337 0.10274767415231248 No Hit GTGGACAATAGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCACCGACTGCT 1319 0.10136438459753191 No Hit GTTTACAATAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 1318 0.10128753517782187 No Hit CAATACAATAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGAC 1314 0.10098013749898174 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.23300744056081632 0.0 0.0 0.0 0.0 11 0.24906896928021297 0.0 0.0 0.0 0.0 12 0.357964597009328 0.0 0.0 0.0 0.0 13 0.45387267280744764 0.0 0.0 0.0 0.0 14 0.7371396338586247 0.0 0.0 0.0 0.0 15 1.1203876899525531 0.0 0.0 0.0 0.0 16 1.311281648512272 0.0 0.0 0.0 0.0 17 1.4566039011839422 0.0 0.0 0.0 0.0 18 1.6892270946462082 0.0 0.0 0.0 0.0 19 1.8830413311549083 0.0 0.0 0.0 0.0 20 2.0459621009401756 0.0 0.0 0.0 0.0 21 2.2271730326164305 0.0 0.0 0.0 0.0 22 2.4169910993002093 0.0 0.0 0.0 0.0 23 2.5751472050634545 0.0 0.0 0.0 0.0 24 2.7531304611118883 0.0 0.0 0.0 0.0 25 2.960162797810714 0.0 0.0 0.0 0.0 26 3.1917100993970395 0.0 0.0 0.0 0.0 27 3.466677323119533 0.0 0.0 0.0 0.0 28 3.710213134180624 0.0 0.0 0.0 0.0 29 3.99055981728282 0.0 0.0 0.0 0.0 30 4.32969630646319 0.0 0.0 0.0 0.0 31 4.64293454120128 0.0 0.0 0.0 0.0 32 4.923665471402026 0.0 0.0 0.0 0.0 33 5.148757421732708 0.0 0.0 0.0 0.0 34 5.335424662208376 0.0 0.0 0.0 0.0 35 5.513254219417389 0.0 0.0 0.0 0.0 36 5.689700487071622 0.0 0.0 0.0 0.0 37 5.860613596506733 0.0 0.0 0.0 0.0 38 6.043745763675738 0.0 0.0 0.0 0.0 39 6.233025884421547 0.0 0.0 0.0 0.0 40 6.428607657583577 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTTTG 20 6.311762E-4 46.000004 25 ATCCTTG 75 0.0 46.000004 24 ATTTAGT 40 5.6115823E-9 46.000004 31 ATTTAAG 75 0.0 46.000004 15 CTTCGCC 75 0.0 46.000004 30 CAGCGTA 160 0.0 46.000004 40 AACGTAT 20 6.311762E-4 46.000004 26 TGTCAAG 20 6.311762E-4 46.000004 15 GAAATAC 80 0.0 46.000004 40 GATACTT 40 5.6115823E-9 46.000004 13 GTACCTT 75 0.0 46.000004 39 CTGTCCG 75 0.0 46.000004 38 TACCCTA 20 6.311762E-4 46.000004 32 CAAACTT 20 6.311762E-4 46.000004 24 AATCCAG 40 5.6115823E-9 46.000004 23 TCTTGAA 20 6.311762E-4 46.000004 45 TCGCACC 20 6.311762E-4 46.000004 43 CTGTATT 75 0.0 46.000004 42 CTGTAGA 20 6.311762E-4 46.000004 31 TTGGACT 40 5.6115823E-9 46.000004 24 >>END_MODULE