SRR1528159_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1528159_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1891052
Sequences flagged as poor quality	0
Sequence length	59
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTGGCAAAGTGGGCTGATGAGCCAGTCCTGCTTGAAGAACCAGTAGTCTTGGCACTAGC	3165	0.16736715859743675	No Hit
TACGCAAAGTGGGGGGGCTGGTGAGATGGCTCAGTGGTTTAGAGCACCCGACTGCTCTT	3088	0.16329535094751493	No Hit
TCGTCAAAGTAGGCATCAAAAAAAATGAAGAAGAACTCTAGATAATGTAGCCATATTCC	2547	0.13468693616040173	No Hit
TCATCAAAGTGGGCGGGTGCAGTGGCTCACACTTGTTATCCCAGCTCTTTGGGAGGCCG	2395	0.12664908209821835	No Hit
GCTCCAAAGTGGTGTTAACGCAGAGTTATTCAAAGTGGGGCTACTTGGGAGGCTGAGGC	2382	0.12596163405342634	No Hit
GGACCAAAGTGGGTGTATGACAGACACGTGTCTTTCCCCTAGGGAAGACATGACGTTAC	2271	0.12009188536327928	No Hit
GGTTCAAAGTGGGGAGGATAACTGATGCATCACCATCATCACCATGCTCCTGGTATGAA	2252	0.11908715360550634	No Hit
GGTGCAAAGTGGGGATGCAGAGATGACCTGTGACTTGTAGGCAGTTAAAATTACTTAGG	2233	0.11808242184773343	No Hit
TCAGCAAAGTGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGAGGCAG	2137	0.11300588244003867	No Hit
GTTCCAAAGTGGGCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTCTT	2036	0.10766493993819312	No Hit
CAGGCAAAGTGGGGGACTCGACTCGGTCCTCCGCCCGCCCCGGGAATACCTCTAGCTCT	2025	0.10708325313106146	No Hit
TCAGCAAAGTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA	1940	0.10258840053049836	No Hit
TGTACAAAGTGGGACGCGCGGCGACATGGAAGACATCCGCGGCGTGACGATCAACTCGT	1937	0.1024297586740079	No Hit
GATTCAAAGTGGGAGAGTGTGTCAAAGTGGGAAGCAGTATCAACGCAGAATCGCCCAAA	1937	0.1024297586740079	No Hit
CAGTCAAAGTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGATTGCTCTTCT	1928	0.10195383310453651	No Hit
AAATCAAAGTGGGGAGTCATCCAAAGTGGGTCATGTAATTTAATGTGCCAAATAAGCCT	1907	0.1008433401091033	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTAAC	20	3.1387628E-4	53.000004	16
AGGTACT	45	7.6397555E-11	53.000004	39
GTTTCTT	20	3.1387628E-4	53.000004	33
TACTTAC	45	7.6397555E-11	53.000004	31
TAGACTT	20	3.1387628E-4	53.000004	36
TTTAACG	155	0.0	53.000004	49
CATGACT	90	0.0	53.000004	45
ATTACTC	20	3.1387628E-4	53.000004	44
TTCACGA	80	0.0	53.000004	20
ACATTAG	150	0.0	53.000004	35
CCTACAC	160	0.0	53.000004	32
TAAGTTA	20	3.1387628E-4	53.000004	37
ATTCGGC	20	3.1387628E-4	53.000004	28
TAAGTGT	90	0.0	53.000004	14
TAACGTT	160	0.0	53.000004	51
CTAAGCT	20	3.1387628E-4	53.000004	31
CACTGAA	20	3.1387628E-4	53.000004	46
CGACACC	20	3.1387628E-4	53.000004	16
TACATGT	20	3.1387628E-4	53.000004	31
TATTGGC	90	0.0	53.000004	25