SRR1528147_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1528147_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1324147
Sequences flagged as poor quality	0
Sequence length	59
%GC	41

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
ATAGGGGTTTGGGACAAGCCCCTAGACCTGCGACCCAAGAAGACTAGAGCCATGCGCCG	3452	0.2606961311697266	No Hit
CTTGGGGTTTGGTGTGCAGCGTTGCTCCCCGTTAACTCGCGTAAAGGCGCAGATAAAAT	2907	0.21953755889640653	No Hit
CATAGGGTTTGGGCGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTGAAACCCC	2297	0.17347016607672713	No Hit
CCAGGGGTTTGGGGGGAGGCCGAGGTGGGCGGATCATGAAGTCAGGAGATCGAGACCTT	2231	0.16848582521427002	No Hit
GATAGGGTTTGGGAACATTACAGGGCTTGCCTCAAATCTCTGAAAAGCCACATGTAAGC	2110	0.159347866966432	No Hit
TCTTGGGTTTAGGAGGCCTCTGTACCTTCCAAGGGGCTCCCCCCTCTGCTCTGCACCAG	2085	0.1574598590639861	No Hit
GATGGGGTTTCCCAGGACTGGGCTAGGGAGTGTTGGTCTAGATGCAAACCTACAGAGTT	1880	0.1419781942639299	No Hit
CTCAGGGTTTGGGCTGGACGCTTTGCGTGAAAATCTGCATTTGATCGGTACCAAGAAAG	1793	0.13540792676341826	No Hit
GACTGGGTTTGGGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTACTCTTCT	1774	0.1339730407575594	No Hit
TATGGGGTTTGGGGTTGCTGGGTTTGGGAAAACCCTCACTAGTGACTGAAGATGAAAAG	1601	0.12090802607263393	No Hit
AAAGGGGTTTGGGCATGTGCGTCCCATGGTGTGGCCCCAAGCTTCGGGCATGGCAGTAC	1543	0.1165278477389595	No Hit
TCAAGGGTTTGGGGCCGGCGTTGTGGCGCACGCCTTTAATCCCAGCATTGGGGAGGCAG	1528	0.11539504299749198	No Hit
TTTGGGGTTTGGGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTACTCTTCT	1480	0.11177006782479587	No Hit
CCAGGGGTTTGGGAAATAAAACGGGATAGCTGAATAAGTACCACGGTGAGCGTAAACGC	1462	0.11041070213503486	No Hit
ACCTGGGTTTGGGCAATTCTCCTCCCTCAGCCTCCCAAGTAGCTAGGATTGCAGGTGCC	1403	0.10595500348526259	No Hit
ACTAGGGTTTGGGGTTTCTCTCTTGCTCTGCGCGCCCGGCGCTCTGGCTCCTAAAGATG	1347	0.10172586578378383	No Hit
GGATGGGTTTGGGCAAGGTTCGCTGCAGCAGGTACCTTTACACCCTGGTTATCACAGAC	1345	0.10157482515158817	No Hit
TACGGGGTTTGGGCTCTTCTGGGATCACAGGCCTGCACACTACAGCTGGTTTGTGCAGT	1327	0.10021545946182711	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCTTCAC	65	53.000004	28
CTAGATG	245	53.000004	38
GACAGTT	75	53.000004	50
TTAATGT	65	53.000004	20
CTTCACT	65	53.000004	29
GACGTTC	65	53.000004	15
CACATCG	65	53.000004	37
ACACATC	65	53.000004	36
ACATTAC	245	53.000004	15
ATTGTAC	75	53.000004	31
TATATGA	65	53.000004	29
TTACTGT	75	53.000004	44
CCTAATA	65	53.000004	35
CCTAAAT	65	53.000004	31
TCTAGCT	75	53.000004	37
CATTACA	245	53.000004	16
TATGAAG	65	53.000004	31
CACCTAG	65	53.000004	18
TACTGTA	75	53.000004	45
GCTTAAG	150	53.000004	37

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content