SRR1528143_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1528143_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1881725
Sequences flagged as poor quality	0
Sequence length	52
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTACTTCGGGCGGATTGCAAATCCGTCTAGTCCGGTTCGACTCCGGAAC	3113	0.16543331251909818	No Hit
AACCTACTTCGGGTGGCTTATGCCTGTAATCTTAGCACATTTGGAGGCTGAG	2327	0.12366312824668854	No Hit
CCGATACTTCGGGGCATATTGCATATTGAGTGCATATTGCGTATTGCATATT	2233	0.11866771180698561	No Hit
CGGCTACTTCGGGCCGGATGAGTATTCAAAAGGAAACTCATCTGGCTATTTT	2221	0.11802999907000225	No Hit
AGTGTACTTCGGGTTGTCACATCTCAATATCATGGCAATTATACAGATTCAG	1971	0.10474431704951574	No Hit
GCGGTACTTCGGGCTGGCCAATATGGTGAAACCCCATCTCTACCAAAAGTAC	1931	0.10261860792623789	No Hit
TGCATACTTCGGGATGAAAAAACAGTGCTTCGGCTGCTTGAGGAGCTTGAAG	1925	0.1022997515577462	No Hit
CGAATACTTCGGGGAACTGCCTGCCACATTCGGCCCACGGGAGCTGCCTGCG	1911	0.10155575336459896	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACTC	20	6.312484E-4	46.000004	24
TTAGGTG	80	0.0	46.000004	26
GAAATGC	55	1.8189894E-12	46.000004	29
AGCAATT	70	0.0	46.000004	43
AGACTAA	110	0.0	46.000004	35
TGCCCAT	35	1.0200347E-7	46.000004	21
CCCTCGA	40	5.6152203E-9	46.000004	22
ATGATCC	80	0.0	46.000004	18
GTCTGTG	40	5.6152203E-9	46.000004	24
CCCTAGT	40	5.6152203E-9	46.000004	26
TAGACCT	70	0.0	46.000004	22
TCCTGCA	35	1.0200347E-7	46.000004	28
TTTAAGG	40	5.6152203E-9	46.000004	22
GTTTACA	35	1.0200347E-7	46.000004	13
ATGTGTC	35	1.0200347E-7	46.000004	27
CATGACA	20	6.312484E-4	46.000004	26
GACGTGA	35	1.0200347E-7	46.000004	40
CTATAAT	70	0.0	46.000004	15
CTATAAC	40	5.6152203E-9	46.000004	31
TTATGAA	40	5.6152203E-9	46.000004	38