SRR1528142_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1528142_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1878340
Sequences flagged as poor quality	0
Sequence length	52
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTACTTCGGGCGGATTGCAAATCCGTCTAGTCCGGTTCGACTCCGGAAC	3265	0.17382369539061085	No Hit
CCGATACTTCGGGGCATATTGCATATTGAGTGCATATTGCGTATTGCATATT	2275	0.12111758254629089	No Hit
AACCTACTTCGGGTGGCTTATGCCTGTAATCTTAGCACATTTGGAGGCTGAG	2273	0.12101110555064577	No Hit
CGGCTACTTCGGGCCGGATGAGTATTCAAAAGGAAACTCATCTGGCTATTTT	2232	0.11882832713992142	No Hit
CGAATACTTCGGGGAACTGCCTGCCACATTCGGCCCACGGGAGCTGCCTGCG	2021	0.10759500409936434	No Hit
GCGGTACTTCGGGCTGGCCAATATGGTGAAACCCCATCTCTACCAAAAGTAC	2001	0.10653023414291343	No Hit
AGTGTACTTCGGGTTGTCACATCTCAATATCATGGCAATTATACAGATTCAG	1932	0.10285677779315779	No Hit
TGCATACTTCGGGATGAAAAAACAGTGCTTCGGCTGCTTGAGGAGCTTGAAG	1913	0.10184524633452942	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCTAG	55	1.8189894E-12	46.000004	39
ACACGGT	55	1.8189894E-12	46.000004	20
CATATAG	110	0.0	46.000004	40
ATTAGCA	110	0.0	46.000004	25
GATAAGT	55	1.8189894E-12	46.000004	42
TAGGTCA	55	1.8189894E-12	46.000004	18
CGACCAG	110	0.0	46.000004	46
CTCTTGT	55	1.8189894E-12	46.000004	21
ATATGTG	55	1.8189894E-12	46.000004	32
CCTCGTG	55	1.8189894E-12	46.000004	39
TCTAGGT	55	1.8189894E-12	46.000004	32
TCCTAGG	55	1.8189894E-12	46.000004	40
CATTACG	110	0.0	46.000004	24
CTAACTG	115	0.0	46.000004	45
CCCAACA	110	0.0	46.000004	35
CTTATGA	55	1.8189894E-12	46.000004	37
TAACAGT	55	1.8189894E-12	46.000004	23
AGGCACA	55	1.8189894E-12	46.000004	44
TAACAAT	110	0.0	46.000004	15
CCTCACT	110	0.0	46.000004	34