SRR1528141_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1528141_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1779536
Sequences flagged as poor quality	0
Sequence length	59
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTACTTCGGGCGGATTGCAAATCCGTCTAGTCCGGTTCGACTCCGGAACGCGCCTC	3098	0.17409032466890245	No Hit
CCGATACTTCGGGGCATATTGCATATTGAGTGCATATTGCGTATTGCATATTGAGTGCA	1968	0.11059062587101356	No Hit
CGGCTACTTCGGGCCGGATGAGTATTCAAAAGGAAACTCATCTGGCTATTTTTATATTA	1835	0.10311676751692576	No Hit
AGTGTACTTCGGGTTGTCACATCTCAATATCATGGCAATTATACAGATTCAGAGTCAAT	1788	0.1004756296023233	No Hit
TAGCTACTTCGGGGACAAGAGAAATAAATAAAATGTCATCTGTTAGGAAGCCATTCTAA	1787	0.10041943517860835	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAAGG	25	1.4790627E-5	53.000004	52
CCTTAGG	50	3.6379788E-12	53.000004	40
CAACGAC	50	3.6379788E-12	53.000004	22
CTAAATG	50	3.6379788E-12	53.000004	28
ACGTGAC	25	1.4790627E-5	53.000004	41
GGATTAG	25	1.4790627E-5	53.000004	49
CTTAGGT	50	3.6379788E-12	53.000004	41
TGTGTCG	50	3.6379788E-12	53.000004	28
CTAGGTT	25	1.4790627E-5	53.000004	36
TATAACC	25	1.4790627E-5	53.000004	36
TGTCGAG	50	3.6379788E-12	53.000004	30
TCTGGCG	25	1.4790627E-5	53.000004	24
ACAAGGT	50	3.6379788E-12	53.000004	24
TATTTGC	20	3.1387128E-4	53.0	34
ATGGGTG	20	3.1387128E-4	53.0	27
ACAACCC	15	0.0066968673	53.0	25
TTCTACA	20	3.1387128E-4	53.0	38
TAATAAC	35	3.3434844E-8	53.0	53
CTGTCAA	110	0.0	53.0	38
CGTATAA	15	0.0066968673	53.0	30