##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528140_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1804982 Sequences flagged as poor quality 0 Sequence length 52 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.114016649473513 31.0 31.0 34.0 28.0 34.0 2 31.706502336311388 31.0 31.0 34.0 30.0 34.0 3 31.842959098761096 31.0 31.0 34.0 30.0 34.0 4 35.53048839268203 37.0 35.0 37.0 33.0 37.0 5 35.365054055940725 37.0 35.0 37.0 33.0 37.0 6 35.52334538516173 37.0 35.0 37.0 33.0 37.0 7 35.757516141435204 37.0 35.0 37.0 35.0 37.0 8 35.62142891175646 37.0 35.0 37.0 33.0 37.0 9 37.590619186230114 39.0 37.0 39.0 35.0 39.0 10 37.09657547831502 39.0 37.0 39.0 33.0 39.0 11 37.56027428528373 39.0 37.0 39.0 35.0 39.0 12 37.59635719358974 39.0 37.0 39.0 35.0 39.0 13 37.32373951651596 39.0 37.0 39.0 35.0 39.0 14 37.370390951267105 40.0 37.0 40.0 32.0 40.0 15 36.06338567365215 38.0 35.0 40.0 30.0 40.0 16 36.44933966100493 38.0 35.0 40.0 31.0 40.0 17 36.22653577708808 38.0 35.0 40.0 30.0 40.0 18 36.57055582825757 38.0 35.0 40.0 31.0 40.0 19 36.79482343868249 39.0 35.0 40.0 31.0 40.0 20 36.948405025645684 39.0 36.0 40.0 31.0 40.0 21 37.002683129250045 39.0 36.0 40.0 31.0 40.0 22 37.13492378317346 39.0 36.0 40.0 32.0 40.0 23 37.19371661324046 39.0 36.0 40.0 32.0 40.0 24 37.14501751264002 40.0 36.0 40.0 32.0 40.0 25 37.221276444862056 40.0 36.0 40.0 32.0 40.0 26 36.98528960399605 40.0 36.0 40.0 31.0 40.0 27 36.527164259809794 39.0 35.0 40.0 30.0 40.0 28 35.94168916919947 38.0 35.0 40.0 30.0 40.0 29 35.640965394668754 37.0 35.0 40.0 30.0 40.0 30 35.40258961031191 37.0 34.0 40.0 29.0 40.0 31 35.17997076979161 37.0 34.0 40.0 28.0 40.0 32 35.01009483751084 37.0 34.0 40.0 27.0 40.0 33 34.833416621329185 37.0 34.0 40.0 25.0 40.0 34 34.666568974095036 37.0 33.0 40.0 24.0 40.0 35 34.54795560288136 37.0 33.0 40.0 24.0 40.0 36 34.323664169504184 36.0 33.0 40.0 23.0 40.0 37 34.032927198165964 36.0 33.0 40.0 21.0 40.0 38 33.56931426462979 36.0 33.0 40.0 20.0 40.0 39 32.8852448390067 35.0 33.0 40.0 15.0 40.0 40 32.23423169870946 35.0 32.0 40.0 13.0 40.0 41 31.415055108582802 35.0 30.0 39.0 10.0 40.0 42 30.697710004864316 35.0 28.0 39.0 9.0 40.0 43 30.043617055460942 35.0 25.0 38.0 8.0 40.0 44 29.530953771284146 35.0 23.0 38.0 8.0 40.0 45 29.16645927771025 35.0 23.0 38.0 8.0 40.0 46 28.78300116012237 35.0 20.0 38.0 8.0 40.0 47 28.31578819068556 34.0 20.0 37.0 8.0 40.0 48 27.931119534710042 34.0 18.0 37.0 8.0 40.0 49 27.65817775468121 34.0 17.0 36.0 8.0 40.0 50 27.220509678212856 33.0 15.0 35.0 8.0 40.0 51 26.866865708356094 33.0 13.0 35.0 8.0 39.0 52 26.095323388266475 33.0 10.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 5.0 14 14.0 15 39.0 16 149.0 17 454.0 18 1135.0 19 2499.0 20 4722.0 21 8035.0 22 12532.0 23 17972.0 24 24926.0 25 33906.0 26 44464.0 27 57610.0 28 72584.0 29 89440.0 30 98941.0 31 92055.0 32 82051.0 33 87569.0 34 113583.0 35 150167.0 36 201989.0 37 269496.0 38 277984.0 39 60658.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.15118931933947 24.19641857924345 36.914495546215974 5.737896555201105 2 24.5293304863982 20.770345632255612 34.59740872762166 20.102915153724524 3 21.86935936203242 20.515717054242092 36.97155982718941 20.643363756536075 4 30.524570328125154 20.636937099649746 38.585149325588844 10.253343246636254 5 0.0 0.0 0.0 100.0 6 0.0 0.0 100.0 0.0 7 0.0 0.0 100.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 0.0 100.0 0.0 10 100.0 0.0 0.0 0.0 11 98.68475142688403 0.7420018592983199 0.2089771532347691 0.36426956058287563 12 97.87454944149027 1.2396245502725234 0.39119503684801293 0.4946309713891883 13 90.08123072695462 6.5914784745775865 1.9790225054875894 1.348268292980207 14 38.72382106857575 43.2220376712898 11.170693114945191 6.883448145189259 15 24.275034321671907 53.270835941854266 14.24202568225057 8.212104054223255 16 33.024152041405394 40.35691214649232 15.79694423545498 10.821991576647303 17 16.983770475273438 39.67690536526126 27.285978475131607 16.053345684333696 18 16.632908250608594 44.562383447591166 26.16419443517996 12.640513866620276 19 20.64264352774709 44.35102399913129 23.54887749573126 11.457454977390356 20 17.26981210892962 45.06105878064158 25.100638122707043 12.568490987721761 21 19.51897581250118 45.5162433752802 18.134419068999026 16.830361743219598 22 15.995671979000345 44.062046048104634 19.22811418618025 20.71416778671477 23 11.636293325916823 42.22679228934139 30.960364147675712 15.176550237066074 24 12.698464583026311 42.755329416027415 27.40110427694016 17.14510172400611 25 16.369747731556323 39.350253908349224 21.597611499726867 22.682386860367583 26 18.003614440476415 41.19415041258029 23.746940412702177 17.055294734241116 27 26.84774695814141 45.192029615807805 14.905411799120435 13.054811626930352 28 28.368482344976293 44.604987750570366 12.838188968089431 14.188340936363907 29 30.34334968437358 45.867936633163104 10.959666079772541 12.829047602690775 30 30.46445892535217 48.75350557512485 11.196787557992268 9.585247941530719 31 21.515394613353486 54.94553408288836 12.886887514667736 10.652183789090417 32 17.629483285705895 60.18481070725359 11.933637011338618 10.252068995701896 33 15.910352568612874 59.233887096935035 13.908282741877759 10.94747759257433 34 13.208331163413265 60.206971593068516 15.747470057873153 10.837227185645066 35 14.804579768662512 59.1851331481422 13.832714121248854 12.177572961946435 36 14.465518215694118 59.08280525789177 14.48468738192403 11.966989144490084 37 16.584708323961124 58.24024837920822 15.646638027415232 9.52840526941543 38 16.898894282602264 59.49339106982784 13.665898053276987 9.941816594292908 39 15.458713715704645 59.9064699814181 13.225616654348906 11.40919964852835 40 19.643630795210147 57.107106885276416 12.701954922542164 10.547307396971272 41 20.184522615737997 55.97900699286752 12.20931843087632 11.627151960518166 42 18.413923241339802 57.149711188255615 12.973924393705866 11.462441176698714 43 19.583741001295305 54.923594805931586 13.783793965812402 11.708870226960713 44 19.604184418459575 52.8075626238932 13.433374958863856 14.154877998783366 45 20.74081625190722 51.80555817177124 12.973093360487805 14.48053221583373 46 21.82176885974486 53.97488728419453 10.99462487714559 13.208718978915023 47 21.590409211837017 53.88402765235332 12.544723437685251 11.980839698124415 48 21.90321011511472 54.56868821960551 12.548934005990088 10.979167659289677 49 22.362383669200025 53.79327882494119 11.315292894887595 12.52904461097119 50 20.558265955006753 53.395269315705086 13.87803313274038 12.168431596547777 51 20.65627247252327 52.34174080406342 13.50007922516679 13.50190749824652 52 21.47123904836724 50.32188686646183 12.643616390634365 15.563257694536567 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 2.5 6 5.0 7 16.0 8 27.0 9 412.0 10 797.0 11 5148.0 12 9499.0 13 15616.5 14 25284.0 15 28834.0 16 27851.0 17 26868.0 18 23985.0 19 21102.0 20 22495.5 21 23889.0 22 27988.5 23 32088.0 24 39856.0 25 47624.0 26 60270.0 27 72916.0 28 89521.0 29 106126.0 30 118471.5 31 130817.0 32 132814.5 33 134812.0 34 124996.0 35 115180.0 36 101320.0 37 87460.0 38 79761.0 39 68729.5 40 65397.0 41 66157.0 42 66917.0 43 68810.0 44 70703.0 45 78878.0 46 87053.0 47 99415.5 48 111778.0 49 115597.0 50 119416.0 51 107131.0 52 94846.0 53 91672.0 54 88498.0 55 77142.0 56 65786.0 57 53167.0 58 40548.0 59 33981.5 60 27415.0 61 21466.5 62 15518.0 63 11531.5 64 5816.5 65 4088.0 66 5027.5 67 5967.0 68 3273.5 69 580.0 70 689.0 71 798.0 72 454.5 73 111.0 74 78.5 75 46.0 76 44.5 77 43.0 78 42.0 79 41.0 80 28.5 81 16.0 82 13.0 83 10.0 84 9.0 85 8.0 86 10.0 87 12.0 88 7.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1804982.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.11958837477136 #Duplication Level Percentage of deduplicated Percentage of total 1 87.88475939469518 35.25900371330991 2 5.190215451905936 4.1645861501368815 3 1.5803946477270192 1.9021434820949936 4 0.7900423990438967 1.2678470339303196 5 0.4997718571444273 1.0025320594964728 6 0.3614835661335113 0.8701543126512546 7 0.2669668562423054 0.7497420267503637 8 0.22967805519024317 0.7371671226360459 9 0.1921673712107773 0.6938708248834444 >10 2.630129699809356 23.15943994443634 >50 0.2369054850693681 6.282668568357827 >100 0.09638144559765022 8.282074391858291 >500 0.029197850577388385 8.353317124696638 >1k 0.011905919652915651 7.275453244761275 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGTCTTCTGAGCTACTGCGCTTGGCCCCCTCCCCCCACCACAGCCCTCAGA 4058 0.2248221865924425 No Hit TTCACTTCTGGGTGGAGGCTGAGGTGGGCACATTGCTTAAGCCCAGGAGTTC 3556 0.1970102748947081 No Hit GGCGCTTCTGGAAAGTTCCTTTCAGCTCTGACACTCTGCGTGGCCTGATTTC 3119 0.17279950714189948 No Hit ATTACTTCTGGGGAGTGGCCTCAGAGAGAGGGGACCCACAGCTGGAGGCTGG 2953 0.16360273952870444 No Hit GCTGCTTCTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2748 0.15224528554855396 No Hit ATATCTTCTGGGGCGGTGCCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC 2695 0.149308968178076 No Hit TTGGCTTCTGCCGATTTCACCCCCGCGGTGCATGCCTCTCTGGACAAATTCC 2645 0.14653885745121004 No Hit CTATCTTCTGGGGGTGAAATCCTTGCCCAGGTGGTGGCTGGAGTGGCCGCTG 2465 0.13656645883449253 No Hit CTAGCTTCTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGTGC 2409 0.13346393482040264 No Hit ACTGCTTCTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2317 0.12836693108296926 No Hit CTTTCTTCTGGGGAGGAGTTCGAGACCAGCCTGACCAACATGGTGCAACCCT 2115 0.1171756837464307 No Hit ACAACTTCTGGGGAGATTACTGTCATCCAAAAGCAGGGAACTAGGCCCGGCG 2113 0.11706487931735607 No Hit GTTGCTTCTGGGGCCAACACTTTGGGAGGCCAAGGTGGACAGATCATGAAGT 2023 0.11207868000899732 No Hit AGTACTTCTGGGGTTCACCGCGTGCGCCGGTAAGGCCAAGCTGTTGGTACAA 2014 0.11158006007816144 No Hit ACTACTTCTGGGGTATCAACGCAGAGTTGAACTTCTGGAGCAGACCTCCTAC 1929 0.10687087184248929 No Hit AGCACTTCTGGGGTGCAATTCAGCAACTAAAAGACAAATATCCTAATAAAAA 1890 0.10471018547553383 No Hit TAAACTTCTGGGGCGCGGTGCATGCCTCTCTGGATAAATTCCTTGCCTCTGT 1880 0.10415616333016063 No Hit CCTGCTTCTGGGGACAGAATACAAAGATCATGAAGAAACGGAAAAGCATTCC 1836 0.10171846589051858 No Hit GTATCTTCTGGGGATGTAAGCCACGGCTCTGCCCAGGTCAAGGGTCACGGCA 1835 0.10166306367598126 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.03163466450080943 0.0 0.0 0.0 0.0 12 0.054238768032035777 0.0 0.0 0.0 0.0 13 0.14493219322962778 0.0 0.0 0.0 0.0 14 0.46814871284034965 0.0 0.0 0.0 0.0 15 0.8412272255346591 0.0 0.0 0.0 0.0 16 1.077406866107252 0.0 0.0 0.0 0.0 17 1.238516505981777 0.0 0.0 0.0 0.0 18 1.4477706702892328 0.0 0.0 0.0 0.0 19 1.6278278675355211 0.0 0.0 0.0 0.0 20 1.7936466956457184 0.0 0.0 0.0 0.0 21 1.9642855164206623 0.0 0.0 0.0 0.0 22 2.143179267161667 0.0 0.0 0.0 0.0 23 2.325120139702224 0.0 0.0 0.0 0.0 24 2.517919846292096 0.0 0.0 0.0 0.0 25 2.7286698703920593 0.0 0.0 0.0 0.0 26 2.965680544182712 0.0 0.0 0.0 0.0 27 3.1840760738888254 0.0 0.0 0.0 0.0 28 3.4138290575750894 0.0 0.0 0.0 0.0 29 3.6670171780106395 0.0 0.0 0.0 0.0 30 3.9517291585179244 0.0 0.0 0.0 0.0 31 4.220485301238461 0.0 0.0 0.0 0.0 32 4.447301967554247 0.0 0.0 0.0 0.0 33 4.655780500858181 0.0 0.0 0.0 0.0 34 4.854785255476232 0.0 0.0 0.0 0.0 35 5.052294150301776 0.0 0.0 0.0 0.0 36 5.241381908517647 0.0 0.0 0.0 0.0 37 5.429140013584623 0.0 0.0 0.0 0.0 38 5.619945240451151 0.0 0.0 0.0 0.0 39 5.819504017214576 0.0 0.0 0.0 0.0 40 6.025766461937017 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATCAG 70 0.0 46.000004 37 TATTTTA 140 0.0 46.000004 33 TTTAGTA 140 0.0 46.000004 36 TCGCCCC 110 0.0 46.000004 32 ATTTACT 55 1.8189894E-12 46.000004 36 ATTTAAT 70 0.0 46.000004 41 GCCCCAC 35 1.0199983E-7 46.000004 35 AAGTATT 35 1.0199983E-7 46.000004 33 GTGCACA 35 1.0199983E-7 46.000004 20 CTAGAAC 70 0.0 46.000004 41 TCGTTTA 110 0.0 46.000004 39 GACAGGT 55 1.8189894E-12 46.000004 13 CTCACTG 150 0.0 46.000004 39 CGGCGAC 75 0.0 46.000004 17 CCTTAGC 55 1.8189894E-12 46.000004 27 TGCCCTA 75 0.0 46.000004 40 GCGACGA 75 0.0 46.000004 19 TTAATGT 70 0.0 46.000004 43 TACTTAC 55 1.8189894E-12 46.000004 37 AGATATT 75 0.0 46.000004 26 >>END_MODULE