##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528139_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1793203 Sequences flagged as poor quality 0 Sequence length 52 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.145994067598593 31.0 31.0 34.0 28.0 34.0 2 31.7304727908664 31.0 31.0 34.0 30.0 34.0 3 31.865644324708356 31.0 31.0 34.0 30.0 34.0 4 35.567801860692846 37.0 35.0 37.0 33.0 37.0 5 35.49087861218167 37.0 35.0 37.0 33.0 37.0 6 35.58171160766517 37.0 35.0 37.0 33.0 37.0 7 35.75122838853158 37.0 35.0 37.0 35.0 37.0 8 35.62693069329016 37.0 35.0 37.0 33.0 37.0 9 37.59895616949113 39.0 37.0 39.0 35.0 39.0 10 37.046254105084586 39.0 37.0 39.0 33.0 39.0 11 37.54448380913929 39.0 37.0 39.0 35.0 39.0 12 37.61298302534627 39.0 37.0 39.0 35.0 39.0 13 37.32143376962898 39.0 37.0 39.0 35.0 39.0 14 37.32843074654682 40.0 37.0 40.0 31.0 40.0 15 36.085447659857806 38.0 35.0 40.0 30.0 40.0 16 36.436656641774526 38.0 35.0 40.0 31.0 40.0 17 36.26217723258326 38.0 35.0 40.0 30.0 40.0 18 36.51497237066857 38.0 35.0 40.0 30.0 40.0 19 36.81943092890208 39.0 35.0 40.0 31.0 40.0 20 36.9731742585753 39.0 36.0 40.0 31.0 40.0 21 37.070705324494774 39.0 36.0 40.0 32.0 40.0 22 37.07856890714548 39.0 36.0 40.0 31.0 40.0 23 37.18311646812993 39.0 36.0 40.0 32.0 40.0 24 37.253032144157686 40.0 36.0 40.0 32.0 40.0 25 37.25301262601055 40.0 36.0 40.0 32.0 40.0 26 36.897163901688764 40.0 36.0 40.0 31.0 40.0 27 36.40887283815608 39.0 35.0 40.0 30.0 40.0 28 35.87294857302826 38.0 35.0 40.0 30.0 40.0 29 35.573564733050304 37.0 35.0 40.0 29.0 40.0 30 35.21714663649347 37.0 34.0 40.0 29.0 40.0 31 35.05588603186588 37.0 34.0 40.0 28.0 40.0 32 34.978393968781 37.0 34.0 40.0 27.0 40.0 33 34.89273328228873 37.0 34.0 40.0 25.0 40.0 34 34.77135048290684 37.0 34.0 40.0 25.0 40.0 35 34.47593998002457 37.0 33.0 40.0 24.0 40.0 36 34.29962196137303 36.0 33.0 40.0 23.0 40.0 37 34.00893986904996 36.0 33.0 40.0 21.0 40.0 38 33.592816318063264 36.0 33.0 40.0 20.0 40.0 39 32.92064925164635 35.0 33.0 40.0 16.0 40.0 40 32.19384196881223 35.0 31.0 39.0 12.0 40.0 41 31.3578797269467 35.0 30.0 39.0 10.0 40.0 42 30.634571211402168 35.0 28.0 39.0 9.0 40.0 43 30.025980884484355 35.0 25.0 38.0 8.0 40.0 44 29.43638283005326 35.0 23.0 38.0 8.0 40.0 45 29.062827242649046 35.0 22.0 38.0 8.0 40.0 46 28.681200622573126 35.0 20.0 38.0 8.0 40.0 47 28.318509393526554 34.0 20.0 37.0 8.0 40.0 48 27.928592022208306 34.0 18.0 37.0 8.0 40.0 49 27.485927137083756 33.0 15.0 36.0 8.0 40.0 50 27.056881457369858 33.0 15.0 35.0 8.0 39.0 51 26.722129619457473 33.0 12.0 35.0 8.0 39.0 52 25.7957632236841 33.0 10.0 35.0 8.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 1.0 14 10.0 15 38.0 16 132.0 17 456.0 18 1126.0 19 2544.0 20 4804.0 21 8034.0 22 12459.0 23 17859.0 24 25245.0 25 33850.0 26 44736.0 27 57702.0 28 72663.0 29 89416.0 30 99153.0 31 91406.0 32 81342.0 33 87839.0 34 113032.0 35 149356.0 36 199847.0 37 268356.0 38 278391.0 39 53403.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.18190968897554 24.172388736802247 36.92342696281458 5.722274611407633 2 24.55940571145598 20.784317224541784 34.55241821478104 20.103858849221197 3 21.904937700862646 20.461096707957772 37.04694895112265 20.587016640056927 4 30.572054586123265 20.609378860062137 38.524863052314764 10.29370350149983 5 0.0 0.0 0.0 100.0 6 0.0 0.0 100.0 0.0 7 0.0 0.0 100.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 0.0 100.0 0.0 10 100.0 0.0 0.0 0.0 11 98.68280389894507 0.7493853177805302 0.21191131177005618 0.35589947150434165 12 97.89627833547011 1.2368371009863357 0.37809439310552123 0.48879017043803746 13 90.07742012477115 6.592505143031771 1.9712213285389328 1.358853403658147 14 38.68390806841167 43.24920268368946 11.187355809688029 6.879533438210844 15 24.283809473885558 53.28732998996767 14.120933324336397 8.307927211810375 16 33.01087495392323 40.39475731414681 15.815944987823464 10.778422744106496 17 16.91626659112214 39.76705370223003 27.24499122519871 16.07168848144912 18 16.62388474701414 44.657241818132135 26.01155585842763 12.707317576426094 19 20.711988547866582 44.36692332100716 23.44910197005024 11.471986161076018 20 17.242554245113354 45.156627554158675 25.08818020045695 12.512638000271023 21 19.493442739054085 45.572308322036044 18.148586635199695 16.78566230371018 22 16.002928837393203 44.04197405424818 19.29669981591599 20.65839729244263 23 11.618762627544122 42.1983456418487 31.01589725201218 15.166994478595006 24 12.638390633966148 42.86190687836235 27.329532685368026 17.170169802303477 25 16.326260886246565 39.373846686627225 21.60731384009507 22.69257858703114 26 17.906394312300392 41.2766429679183 23.777174140351093 17.039788579430216 27 26.740196174108565 45.18451062149684 14.97527050757778 13.100022696816813 28 28.285308467585658 44.64212919563485 12.845394525884688 14.227167810894805 29 30.226750680207427 45.8824795631058 11.077384992106303 12.813384764580475 30 30.420928361150413 48.643405124796246 11.331845864634401 9.603820649418946 31 21.49996403084313 54.926631284913086 12.889951667491076 10.683453016752704 32 17.63319601852105 60.26506759134354 11.863074063561125 10.238662326574293 33 15.943872500770967 59.29897507421078 13.793697646055689 10.96345477896256 34 13.257729325681474 60.31313799943453 15.637102993916471 10.79202968096752 35 14.769605002891472 59.15587917263132 13.984585125052767 12.089930699424437 36 14.44292698595753 59.11126626489025 14.479398038035852 11.966408711116365 37 16.53861832709403 58.280573922751636 15.674410538014937 9.506397212139394 38 16.892789048423406 59.483560979989434 13.658353237196236 9.96529673439092 39 15.453688176966022 59.97391260219841 13.147368145157017 11.425031075678548 40 19.679868927277056 57.03135673986716 12.752265080975217 10.536509251880572 41 20.249631525265126 55.86985968682854 12.188748290070896 11.691760497835437 42 18.399366942839155 57.10251432771415 13.052565716207257 11.445553013239438 43 19.582055127054772 54.85318728554436 13.862847653054338 11.70190993434653 44 19.582445489997507 52.752365460017636 13.484530195410112 14.180658854574746 45 20.70931177340212 51.83278189920494 13.007785510062162 14.450120817330776 46 21.844431444738827 54.01072828898903 10.928099049577767 13.216741216694372 47 21.740260305163442 53.957750461046516 12.389506374905686 11.912482858884355 48 21.89975145033775 54.628115165990685 12.481799327795013 10.990334055876552 49 22.247341767775318 53.70903350039008 11.454921723865063 12.588703007969537 50 20.55461651580998 53.35820874714129 13.917275400498438 12.169899336550296 51 20.545247805184356 52.31036307657304 13.588589802716145 13.555799315526462 52 21.63302202818086 50.139108622950104 12.7391042731916 15.488765075677433 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 4.5 6 9.0 7 14.5 8 20.0 9 385.5 10 751.0 11 4977.5 12 9204.0 13 15268.5 14 24916.5 15 28500.0 16 27500.0 17 26500.0 18 23745.5 19 20991.0 20 22323.5 21 23656.0 22 27596.5 23 31537.0 24 39440.0 25 47343.0 26 59807.0 27 72271.0 28 89420.0 29 106569.0 30 118099.0 31 129629.0 32 132192.0 33 134755.0 34 124763.0 35 114771.0 36 101264.5 37 87758.0 38 79746.0 39 68377.5 40 65021.0 41 65780.5 42 66540.0 43 68201.0 44 69862.0 45 78376.5 46 86891.0 47 98887.5 48 110884.0 49 114714.0 50 118544.0 51 106186.5 52 93829.0 53 90885.5 54 87942.0 55 76545.0 56 65148.0 57 52435.0 58 39722.0 59 33404.0 60 27086.0 61 21250.5 62 15415.0 63 11373.5 64 5708.5 65 4085.0 66 4980.5 67 5876.0 68 3228.5 69 581.0 70 695.0 71 809.0 72 466.0 73 123.0 74 93.5 75 64.0 76 54.0 77 44.0 78 39.5 79 35.0 80 22.5 81 10.0 82 6.0 83 2.0 84 6.5 85 11.0 86 13.0 87 15.0 88 8.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1793203.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.674033966169176 #Duplication Level Percentage of deduplicated Percentage of total 1 88.02383759505483 35.8028456017382 2 5.173466956770775 4.208515414450967 3 1.5472109833924679 1.8879393627400578 4 0.7652207384544008 1.2449845723004542 5 0.4763487247724353 0.9687512105567703 6 0.3535838379740272 0.8629008621386426 7 0.2711835914966703 0.772109142812232 8 0.23816393257031784 0.7749670306305227 9 0.18361312142864056 0.6721457703860585 >10 2.6051546617680943 23.180695385177923 >50 0.22784883764112568 6.134840356668274 >100 0.09439358992122168 8.242709808783093 >500 0.029313847753609377 8.537242306949782 >1k 0.0106595810013125 6.709353174667054 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGTCTTCTGAGCTACTGCGCTTGGCCCCCTCCCCCCACCACAGCCCTCAGA 4006 0.22339913551338025 No Hit TTCACTTCTGGGTGGAGGCTGAGGTGGGCACATTGCTTAAGCCCAGGAGTTC 3465 0.19322965665348543 No Hit GGCGCTTCTGGAAAGTTCCTTTCAGCTCTGACACTCTGCGTGGCCTGATTTC 3132 0.17465953380626734 No Hit ATTACTTCTGGGGAGTGGCCTCAGAGAGAGGGGACCCACAGCTGGAGGCTGG 2910 0.16227945190812196 No Hit GCTGCTTCTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2666 0.14867251504709728 No Hit TTGGCTTCTGCCGATTTCACCCCCGCGGTGCATGCCTCTCTGGACAAATTCC 2569 0.14326319998349324 No Hit ATATCTTCTGGGGCGGTGCCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC 2556 0.14253824023270092 No Hit CTATCTTCTGGGGGTGAAATCCTTGCCCAGGTGGTGGCTGGAGTGGCCGCTG 2429 0.13545594112880696 No Hit ACTGCTTCTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2370 0.13216573918290345 No Hit CTAGCTTCTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGTGC 2311 0.12887553723699993 No Hit GTTGCTTCTGGGGCCAACACTTTGGGAGGCCAAGGTGGACAGATCATGAAGT 2155 0.12017602022749237 No Hit CTTTCTTCTGGGGAGGAGTTCGAGACCAGCCTGACCAACATGGTGCAACCCT 2105 0.11738771349367584 No Hit ACAACTTCTGGGGAGATTACTGTCATCCAAAAGCAGGGAACTAGGCCCGGCG 2068 0.1153243665106516 No Hit AGTACTTCTGGGGTTCACCGCGTGCGCCGGTAAGGCCAAGCTGTTGGTACAA 1942 0.10829783354143396 No Hit TAAACTTCTGGGGCGCGGTGCATGCCTCTCTGGATAAATTCCTTGCCTCTGT 1902 0.10606718815438074 No Hit AGCACTTCTGGGGTGCAATTCAGCAACTAAAAGACAAATATCCTAATAAAAA 1898 0.10584412361567541 No Hit ACTACTTCTGGGGTATCAACGCAGAGTTGAACTTCTGGAGCAGACCTCCTAC 1871 0.1043384379794145 No Hit CCTGCTTCTGGGGACAGAATACAAAGATCATGAAGAAACGGAAAAGCATTCC 1847 0.10300005074718255 No Hit ATTTCTTCTGGGGGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGA 1814 0.10115976830286363 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.029779115917160523 0.0 0.0 0.0 0.0 12 0.049910690535315855 0.0 0.0 0.0 0.0 13 0.13997299803758972 0.0 0.0 0.0 0.0 14 0.463081982352249 0.0 0.0 0.0 0.0 15 0.8265656481725716 0.0 0.0 0.0 0.0 16 1.0504666788980388 0.0 0.0 0.0 0.0 17 1.206723388261117 0.0 0.0 0.0 0.0 18 1.4146195383344775 0.0 0.0 0.0 0.0 19 1.5957479437631992 0.0 0.0 0.0 0.0 20 1.7670615094888866 0.0 0.0 0.0 0.0 21 1.9308466470332695 0.0 0.0 0.0 0.0 22 2.1027736402403967 0.0 0.0 0.0 0.0 23 2.2812810373393306 0.0 0.0 0.0 0.0 24 2.47780089593872 0.0 0.0 0.0 0.0 25 2.6935600710014427 0.0 0.0 0.0 0.0 26 2.9256029573896543 0.0 0.0 0.0 0.0 27 3.161103344127798 0.0 0.0 0.0 0.0 28 3.3867331250282318 0.0 0.0 0.0 0.0 29 3.63645387610884 0.0 0.0 0.0 0.0 30 3.9179613239549567 0.0 0.0 0.0 0.0 31 4.180229455337739 0.0 0.0 0.0 0.0 32 4.410599357685661 0.0 0.0 0.0 0.0 33 4.61531683808247 0.0 0.0 0.0 0.0 34 4.809438752890777 0.0 0.0 0.0 0.0 35 4.999099376924978 0.0 0.0 0.0 0.0 36 5.180896975969815 0.0 0.0 0.0 0.0 37 5.366263607633938 0.0 0.0 0.0 0.0 38 5.553414755607703 0.0 0.0 0.0 0.0 39 5.748986589917594 0.0 0.0 0.0 0.0 40 5.952031086274114 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATCAG 70 0.0 46.000004 37 ATTTAGC 20 6.312404E-4 46.000004 24 ATTTACA 70 0.0 46.000004 35 CTAGATA 20 6.312404E-4 46.000004 46 ACTATTA 40 5.6152203E-9 46.000004 35 TGTCACG 20 6.312404E-4 46.000004 13 CTATGAA 75 0.0 46.000004 24 TTGGCTG 85 0.0 46.000004 17 TAGAGCG 20 6.312404E-4 46.000004 38 TAATAAG 35 1.0199983E-7 46.000004 17 TCCATTC 75 0.0 46.000004 18 ATCTCAC 75 0.0 46.000004 15 ATTAGTA 75 0.0 46.000004 20 GATAAAT 165 0.0 46.000004 33 TACTTAC 40 5.6152203E-9 46.000004 37 TTCAGAA 160 0.0 46.000004 46 TTTACGT 40 5.6152203E-9 46.000004 15 CCGATAT 80 0.0 46.000004 27 GCGCGGT 160 0.0 46.000004 13 GTTTACG 40 5.6152203E-9 46.000004 14 >>END_MODULE