SRR1528133_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1528133_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2321062
Sequences flagged as poor quality	0
Sequence length	52
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CACTGATCTTGGGTTCTCGAGCGGCGGCCCCAGGGTGCGGTTTCTCACGAGT	6288	0.2709104711550144	No Hit
TGCGGATCTTGGGGTCCACCATGGTGTTAACCAGCTGAAATTTGCCCGAAGC	3052	0.1314915327552646	No Hit
CTAGGATCTTGGGGCCTGGGAAATCCCATGGACAGAGGAGCCTGGTGGGCTA	2950	0.12709699266973482	No Hit
ATGAGATCTTGGGGGAGGCCAAGGTGGGCGGATCACCTGAGGTCAGGAGTTT	2836	0.1221854478682603	No Hit
TGCGGATCTTGGGGGGAGAAGGAAAGGAAAATGGGGAAAAGGGAGAGGTGGG	2735	0.11783399150905921	No Hit
GCATGATCTTGGGCTTTCGCCGCCGGACGCCGCCGAGGTCGCACGCGTGAGG	2495	0.10749389719016554	No Hit
AGTAGATCTTGGGCGTCCACCACCACAGCTGGCTAGGTTTTGTATTTTTAAT	2492	0.10736464601117937	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTCC	35	1.0201802E-7	46.000004	37
CTAGATT	155	0.0	46.000004	36
CTATGTG	155	0.0	46.000004	23
CTCACCA	35	1.0201802E-7	46.000004	15
CATATTA	55	1.8189894E-12	46.000004	19
CTACTTC	55	1.8189894E-12	46.000004	39
CTGTATA	35	1.0201802E-7	46.000004	36
TTTACAT	155	0.0	46.000004	38
CAACGAC	35	1.0201802E-7	46.000004	20
ACACCTA	55	1.8189894E-12	46.000004	35
TAGGTTT	310	0.0	46.000004	34
CACATCG	155	0.0	46.000004	38
AGCCATA	55	1.8189894E-12	46.000004	22
ACACATT	35	1.0201802E-7	46.000004	28
TTGTCAC	35	1.0201802E-7	46.000004	23
CCTACTT	55	1.8189894E-12	46.000004	38
TATATTA	70	0.0	46.000004	34
CCTGTGC	140	0.0	46.000004	14
CAACAAC	35	1.0201802E-7	46.000004	32
ACTTACG	155	0.0	46.000004	42