##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528133_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2321062 Sequences flagged as poor quality 0 Sequence length 52 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.555586192872056 31.0 31.0 33.0 27.0 34.0 2 31.510760591487863 31.0 31.0 34.0 28.0 34.0 3 31.77616970162796 31.0 31.0 34.0 30.0 34.0 4 35.50393828342371 37.0 35.0 37.0 33.0 37.0 5 35.58859651314786 37.0 35.0 37.0 33.0 37.0 6 35.02225188297426 36.0 35.0 37.0 32.0 37.0 7 35.320202562447705 37.0 35.0 37.0 33.0 37.0 8 35.33256888441584 37.0 35.0 37.0 32.0 37.0 9 37.48526881229368 39.0 37.0 39.0 35.0 39.0 10 37.78214972284239 39.0 37.0 39.0 35.0 39.0 11 37.62981471412655 39.0 37.0 39.0 35.0 39.0 12 37.5900441263525 39.0 37.0 39.0 35.0 39.0 13 37.48999768209552 39.0 37.0 39.0 35.0 39.0 14 37.66173243110266 40.0 37.0 40.0 33.0 40.0 15 36.97272713955939 39.0 36.0 40.0 31.0 40.0 16 36.57978589111364 38.0 35.0 40.0 31.0 40.0 17 36.284594724311546 38.0 35.0 40.0 30.0 40.0 18 36.369153430627875 39.0 35.0 40.0 30.0 40.0 19 36.66611361523303 39.0 35.0 40.0 31.0 40.0 20 36.81699325567348 39.0 35.0 40.0 31.0 40.0 21 36.881866576592955 39.0 35.0 40.0 31.0 40.0 22 36.80542182845611 39.0 35.0 40.0 31.0 40.0 23 36.7975698193327 39.0 35.0 40.0 31.0 40.0 24 36.909087305724704 39.0 35.0 40.0 31.0 40.0 25 36.919454973628454 39.0 35.0 40.0 31.0 40.0 26 36.590088071753364 39.0 35.0 40.0 31.0 40.0 27 36.319540365574035 39.0 35.0 40.0 30.0 40.0 28 35.98208233989441 38.0 35.0 40.0 30.0 40.0 29 35.744150737894984 38.0 35.0 40.0 30.0 40.0 30 35.39967135733556 37.0 34.0 40.0 29.0 40.0 31 35.331684806351575 37.0 34.0 40.0 29.0 40.0 32 35.33926194130101 37.0 34.0 40.0 29.0 40.0 33 35.21847542202664 37.0 34.0 40.0 28.0 40.0 34 34.99397129417482 37.0 34.0 40.0 26.0 40.0 35 34.67876945984209 37.0 33.0 40.0 25.0 40.0 36 34.488381611520936 36.0 33.0 40.0 24.0 40.0 37 34.273542455996434 36.0 33.0 40.0 23.0 40.0 38 33.95389093440847 35.0 33.0 40.0 22.0 40.0 39 33.486874542773954 35.0 33.0 40.0 20.0 40.0 40 32.90626230578933 35.0 33.0 40.0 17.0 40.0 41 32.24862325952517 35.0 31.0 40.0 15.0 40.0 42 31.596745799982937 35.0 31.0 39.0 10.0 40.0 43 30.994175080200357 35.0 29.0 39.0 9.0 40.0 44 30.329677104704658 35.0 25.0 39.0 8.0 40.0 45 29.925995514122416 35.0 23.0 39.0 8.0 40.0 46 29.46548691934985 35.0 23.0 38.0 8.0 40.0 47 29.076381845896403 35.0 20.0 38.0 8.0 40.0 48 28.63240964696333 35.0 20.0 38.0 8.0 40.0 49 28.13537811570738 34.0 18.0 38.0 8.0 40.0 50 27.768243157658002 34.0 17.0 37.0 8.0 40.0 51 27.37061009141505 33.0 15.0 37.0 8.0 40.0 52 26.38560882906187 33.0 10.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 6.0 14 13.0 15 39.0 16 182.0 17 561.0 18 1474.0 19 3200.0 20 5941.0 21 9541.0 22 14372.0 23 20460.0 24 28271.0 25 38423.0 26 51158.0 27 66163.0 28 83889.0 29 106012.0 30 125205.0 31 127383.0 32 116304.0 33 117935.0 34 143332.0 35 188197.0 36 264616.0 37 329971.0 38 405545.0 39 72868.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.632787922080496 23.5706327534551 38.97767487469098 6.818904449773424 2 25.807884494253063 21.516400682101555 34.37650523768861 18.299209585956774 3 18.45594818234067 23.135917954798277 36.449521813721475 21.958612049139575 4 20.825251544336172 20.780616803859612 34.51820761358378 23.875924038220436 5 100.0 0.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 100.0 0.0 11 99.44133332069543 0.3905108954435513 0.11257777689695495 0.05557800696405353 12 98.78215230786597 0.9060938484193873 0.14885427446574026 0.16289956924890417 13 94.2822294277361 3.6991687425842135 0.904585917997882 1.1140159116818078 14 45.42756720845888 34.80613615663864 10.858994718796827 8.907301916105645 15 29.262337671290123 41.28347282407795 18.826985233483637 10.627204271148294 16 35.052747406144256 33.221215116183885 18.35832045847978 13.367717019192076 17 20.162882335758372 36.78346377649541 21.583266625363734 21.470387262382477 18 17.4826868045748 46.407161893995074 20.538787847976486 15.571363453453635 19 22.630373510057034 44.97424024002806 21.391673294379903 11.00371295553501 20 19.133913699849465 43.54545462378859 22.647951670399152 14.672680005962787 21 23.900352511048823 44.40260535909855 14.782500424374703 16.914541705477923 22 25.151676258540274 45.71058420671228 17.09889697043853 12.038842564308924 23 16.64862894657704 47.50114387293402 20.497039717163954 15.353187463324977 24 18.074786455510452 48.15562875959367 18.56947380121686 15.200110983679021 25 19.47375813313044 45.17940494480544 19.194058581804363 16.15277834025976 26 19.06666000305033 46.255291758686326 17.559117335081957 17.11893090318139 27 19.94625735977755 49.31613201198417 15.988327756863022 14.749282871375257 28 20.829042912253097 48.22176227950826 15.724224514467947 15.224970293770696 29 22.69732562077187 48.00617131295933 14.183636628405447 15.112866437863357 30 24.263892993810593 48.677157266802865 14.04141724779433 13.01753249159221 31 19.38517799179858 52.04492598646654 14.475615041735207 14.094280979999674 32 19.588877849880788 54.65114675954369 15.653610287015168 10.106365103560352 33 21.792438116689688 53.89739696742267 13.291717325948207 11.018447589939433 34 18.52582998644586 56.22546920332159 13.916000520451414 11.332700289781144 35 19.706151752947573 53.27276910310883 15.908019690986281 11.11305945295731 36 17.634169186346597 52.684977824806055 17.19402583817235 12.486827150674992 37 17.576264658160788 53.860086460421996 17.58436439871059 10.979284482706623 38 16.902952183095497 53.104871821605805 18.221917380923042 11.77025861437566 39 19.770906593619646 52.26215413461597 16.01129138299623 11.955647888768159 40 21.128819480048357 51.06158301673975 15.298255712255857 12.511341790956038 41 22.593967761309266 51.49534997341733 15.383992327650015 10.526689937623381 42 19.738852301231073 51.607367661872026 15.653911873099469 12.999868163797434 43 20.94101751698145 47.58696665578084 17.491217382387887 13.980798444849816 44 20.53094660978466 47.47947275859068 16.012282308701792 15.97729832292287 45 21.018869810457456 46.41271969469148 20.14745836173269 12.420952133118373 46 23.162759116301075 45.95818638192345 17.33055816690808 13.548496334867401 47 25.615774158553283 46.2617112339093 14.9753862671484 13.147128340389012 48 26.17530251238442 46.323881051001656 14.627959098033571 12.872857338580356 49 24.461776548838422 47.314548254204325 14.10918794930941 14.114487247647844 50 22.92420452361893 49.09528483082313 14.328742618680588 13.65176802687735 51 22.38992323341643 49.21165397563701 14.397245743543257 14.001177047403301 52 22.785302589935124 48.04619609471871 15.474468152940336 13.69403316240583 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 2.5 4 5.0 5 15.5 6 26.0 7 367.0 8 708.0 9 3588.0 10 6468.0 11 17469.0 12 28470.0 13 31604.5 14 36342.5 15 37946.0 16 32878.0 17 27810.0 18 30735.5 19 33661.0 20 38003.0 21 42345.0 22 52833.5 23 63322.0 24 79507.5 25 95693.0 26 108837.5 27 121982.0 28 126783.5 29 131585.0 30 123003.5 31 114422.0 32 109219.0 33 104016.0 34 100517.5 35 97019.0 36 92360.5 37 87702.0 38 88026.5 39 91306.0 40 94261.0 41 100958.0 42 107655.0 43 113348.0 44 119041.0 45 126555.0 46 134069.0 47 134300.0 48 134531.0 49 137268.0 50 140005.0 51 127195.5 52 114386.0 53 109799.5 54 105213.0 55 89216.0 56 73219.0 57 61767.5 58 50316.0 59 44181.5 60 38047.0 61 37638.0 62 37229.0 63 31777.0 64 18599.0 65 10873.0 66 9677.5 67 8482.0 68 7751.5 69 7021.0 70 5318.0 71 3615.0 72 2001.5 73 388.0 74 229.5 75 71.0 76 50.5 77 30.0 78 18.0 79 6.0 80 6.0 81 6.0 82 4.5 83 3.0 84 1.5 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2321062.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.68659682457009 #Duplication Level Percentage of deduplicated Percentage of total 1 86.33673447028904 35.12747906542613 2 6.09266547840724 4.957796478138636 3 2.0280024673232977 2.4753755624164917 4 1.0033889712335289 1.6329793012319496 5 0.6127623635437394 1.2465607617387382 6 0.44537213657676983 1.0872405934677838 7 0.32664083837867935 0.930293286828702 8 0.24810426481688394 0.8075614554448742 9 0.21836677401518334 0.7996140804813996 >10 2.326219880659379 20.329168543413616 >50 0.20441449497719225 5.554985577700918 >100 0.12303282338228515 10.629200926970617 >500 0.02035927557524372 5.978070869375467 >1k 0.013826887690138782 8.165135394837101 >5k 1.0887313141841562E-4 0.27853810252775324 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CACTGATCTTGGGTTCTCGAGCGGCGGCCCCAGGGTGCGGTTTCTCACGAGT 6288 0.2709104711550144 No Hit TGCGGATCTTGGGGTCCACCATGGTGTTAACCAGCTGAAATTTGCCCGAAGC 3052 0.1314915327552646 No Hit CTAGGATCTTGGGGCCTGGGAAATCCCATGGACAGAGGAGCCTGGTGGGCTA 2950 0.12709699266973482 No Hit ATGAGATCTTGGGGGAGGCCAAGGTGGGCGGATCACCTGAGGTCAGGAGTTT 2836 0.1221854478682603 No Hit TGCGGATCTTGGGGGGAGAAGGAAAGGAAAATGGGGAAAAGGGAGAGGTGGG 2735 0.11783399150905921 No Hit GCATGATCTTGGGCTTTCGCCGCCGGACGCCGCCGAGGTCGCACGCGTGAGG 2495 0.10749389719016554 No Hit AGTAGATCTTGGGCGTCCACCACCACAGCTGGCTAGGTTTTGTATTTTTAAT 2492 0.10736464601117937 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.024902393818002275 0.0 0.0 0.0 0.0 12 0.035242488136895955 0.0 0.0 0.0 0.0 13 0.0812128241296441 0.0 0.0 0.0 0.0 14 0.4987372159813051 0.0 0.0 0.0 0.0 15 0.9665834001849154 0.0 0.0 0.0 0.0 16 1.2206481343453988 0.0 0.0 0.0 0.0 17 1.4186609405522128 0.0 0.0 0.0 0.0 18 1.6741905214078727 0.0 0.0 0.0 0.0 19 1.9214049430820892 0.0 0.0 0.0 0.0 20 2.180251970865061 0.0 0.0 0.0 0.0 21 2.407217041164777 0.0 0.0 0.0 0.0 22 2.622204835545108 0.0 0.0 0.0 0.0 23 2.8268094518802167 0.0 0.0 0.0 0.0 24 3.043822181397998 0.0 0.0 0.0 0.0 25 3.2915966915144876 0.0 0.0 0.0 0.0 26 3.57168399637752 0.0 0.0 0.0 0.0 27 3.8446194026699847 0.0 0.0 0.0 0.0 28 4.135176053030897 0.0 0.0 0.0 0.0 29 4.453952544137123 0.0 0.0 0.0 0.0 30 4.805429583526851 0.0 0.0 0.0 0.0 31 5.108135844712463 0.0 0.0 0.0 0.0 32 5.3822345116158035 0.0 0.0 0.0 0.0 33 5.608768744652233 0.0 0.0 0.0 0.0 34 5.826815483601903 0.0 0.0 0.0 0.0 35 6.021467759155076 0.0 0.0 0.0 0.0 36 6.217024792961153 0.0 0.0 0.0 0.0 37 6.411289314977368 0.0 0.0 0.0 0.0 38 6.599392864128576 0.0 0.0 0.0 0.0 39 6.796888665619445 0.0 0.0 0.0 0.0 40 6.988352745424293 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTGTCC 35 1.0201802E-7 46.000004 37 CTAGATT 155 0.0 46.000004 36 CTATGTG 155 0.0 46.000004 23 CTCACCA 35 1.0201802E-7 46.000004 15 CATATTA 55 1.8189894E-12 46.000004 19 CTACTTC 55 1.8189894E-12 46.000004 39 CTGTATA 35 1.0201802E-7 46.000004 36 TTTACAT 155 0.0 46.000004 38 CAACGAC 35 1.0201802E-7 46.000004 20 ACACCTA 55 1.8189894E-12 46.000004 35 TAGGTTT 310 0.0 46.000004 34 CACATCG 155 0.0 46.000004 38 AGCCATA 55 1.8189894E-12 46.000004 22 ACACATT 35 1.0201802E-7 46.000004 28 TTGTCAC 35 1.0201802E-7 46.000004 23 CCTACTT 55 1.8189894E-12 46.000004 38 TATATTA 70 0.0 46.000004 34 CCTGTGC 140 0.0 46.000004 14 CAACAAC 35 1.0201802E-7 46.000004 32 ACTTACG 155 0.0 46.000004 42 >>END_MODULE