##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528122_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 340163 Sequences flagged as poor quality 0 Sequence length 52 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.050790356387967 31.0 31.0 34.0 28.0 34.0 2 31.72382945823032 31.0 31.0 34.0 30.0 34.0 3 31.883785126542275 31.0 31.0 34.0 30.0 34.0 4 35.60057090277308 37.0 35.0 37.0 33.0 37.0 5 35.57924877191229 37.0 35.0 37.0 33.0 37.0 6 35.85027472123658 37.0 35.0 37.0 35.0 37.0 7 35.46252531874425 37.0 35.0 37.0 33.0 37.0 8 35.18048112228549 37.0 35.0 37.0 32.0 37.0 9 36.36814409562474 38.0 35.0 39.0 31.0 39.0 10 37.156510261257104 39.0 37.0 39.0 32.0 39.0 11 37.60214955771204 39.0 37.0 39.0 35.0 39.0 12 37.50854443311001 39.0 37.0 39.0 35.0 39.0 13 37.337546999526694 39.0 37.0 39.0 35.0 39.0 14 37.24894829831581 40.0 37.0 40.0 31.0 40.0 15 36.41492460967242 39.0 35.0 40.0 30.0 40.0 16 36.157671469266205 38.0 35.0 40.0 30.0 40.0 17 36.12355547193551 38.0 35.0 40.0 30.0 40.0 18 36.09382266736829 38.0 35.0 40.0 30.0 40.0 19 36.369249448058724 38.0 35.0 40.0 30.0 40.0 20 36.5819768757919 39.0 35.0 40.0 30.0 40.0 21 36.61963823225924 39.0 35.0 40.0 30.0 40.0 22 36.668700005585556 39.0 35.0 40.0 30.0 40.0 23 36.64748076657367 39.0 35.0 40.0 31.0 40.0 24 36.49143498852021 39.0 35.0 40.0 30.0 40.0 25 36.35671428109465 38.0 35.0 40.0 30.0 40.0 26 35.892733777630134 38.0 35.0 40.0 30.0 40.0 27 35.59934501988752 38.0 35.0 40.0 29.0 40.0 28 35.4417940810729 38.0 34.0 40.0 28.0 40.0 29 35.4105531759774 37.0 34.0 40.0 28.0 40.0 30 35.15904728027446 37.0 34.0 40.0 27.0 40.0 31 34.97726090139139 37.0 33.0 40.0 26.0 40.0 32 34.757195814947536 36.0 33.0 40.0 26.0 40.0 33 34.56358275297431 36.0 33.0 40.0 26.0 40.0 34 34.25706793507818 35.0 33.0 39.0 25.0 40.0 35 33.96522255506919 35.0 33.0 39.0 24.0 40.0 36 33.60857882838521 35.0 33.0 38.0 24.0 40.0 37 33.21420907035745 35.0 33.0 37.0 23.0 40.0 38 32.71874954066139 35.0 33.0 37.0 21.0 40.0 39 32.156442646613534 35.0 32.0 36.0 20.0 40.0 40 31.726425272589907 35.0 31.0 36.0 18.0 40.0 41 31.179437504960855 35.0 31.0 35.0 15.0 39.0 42 30.60167037567284 35.0 30.0 35.0 12.0 39.0 43 30.038519768463942 35.0 28.0 35.0 10.0 39.0 44 29.511998659466197 34.0 26.0 35.0 9.0 39.0 45 29.141726172452618 34.0 24.0 35.0 9.0 38.0 46 28.64927402451178 34.0 23.0 35.0 8.0 37.0 47 28.13153693964364 33.0 23.0 35.0 8.0 37.0 48 27.71461916786952 33.0 20.0 35.0 8.0 36.0 49 27.343267786325967 33.0 20.0 35.0 8.0 36.0 50 26.925218204213863 33.0 20.0 35.0 8.0 35.0 51 26.464938867542912 33.0 17.0 35.0 8.0 35.0 52 25.694937427057027 33.0 12.0 35.0 8.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 5.0 15 11.0 16 26.0 17 119.0 18 257.0 19 572.0 20 1082.0 21 1771.0 22 2407.0 23 3518.0 24 4655.0 25 6307.0 26 8260.0 27 10414.0 28 12966.0 29 15796.0 30 17501.0 31 17932.0 32 18128.0 33 20577.0 34 25686.0 35 36318.0 36 50298.0 37 58779.0 38 24567.0 39 2209.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.123608387743523 25.265240487648565 37.55758268829943 6.053568436308476 2 28.05831322042668 22.012388178608493 32.20103303416303 17.7282655668018 3 17.84497432113428 25.420460191143658 32.738422462172544 23.996143025549515 4 17.402833347542206 26.32590846153168 30.288420551323924 25.98283763960219 5 0.0 100.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 0.0 0.0 0.0 100.0 8 100.0 0.0 0.0 0.0 9 0.0 0.0 0.0 100.0 10 0.0 0.0 0.0 100.0 11 97.21486463842335 1.6597925112372596 0.20989937177176826 0.9154434785676279 12 95.98104438166408 3.4748047259696087 0.2757501550727151 0.2684007372935916 13 89.96980859176335 6.956076939584846 2.1166323203875788 0.9574821482642146 14 39.57132315977928 38.00119354544733 14.311374252931683 8.116109041841705 15 35.62174604527829 35.63879669452586 20.494292442152734 8.245164818043115 16 32.4570867495877 37.088983810702516 18.123664243318643 12.330265196391142 17 27.403039131240025 31.04011900177268 19.924565575915075 21.632276291072223 18 16.099928563659187 38.70761958237669 28.127397747550436 17.06505410641369 19 19.73642048076951 42.840932141355765 25.889059068740572 11.533588309134151 20 20.975238341618578 40.01023038954854 23.035427133462488 15.979104135370395 21 21.43237212748006 40.55555718875951 15.35058192689975 22.66148875686068 22 21.857462451824567 43.41359877470507 17.019487716183125 17.709451057287243 23 17.644776180830952 47.15063072703381 17.550409656547007 17.654183435588234 24 16.76754967471477 45.87918145124543 14.598883476450997 22.754385397588802 25 25.061220650100097 37.17423705694035 13.84718502600224 23.91735726695731 26 24.75901259102254 37.74425789988917 12.750357916645843 24.746371592442447 27 18.55287024161946 45.63694464124552 11.881950711864606 23.928234405270416 28 17.220861763331108 46.41333713543213 11.58944388425549 24.77635721698127 29 26.168924897769596 47.31172996475219 11.363081816658484 15.156263320819724 30 26.258587794674902 51.74019514174088 10.843624968030033 11.15759209555419 31 20.5733721774561 54.89103753200671 10.574930254025276 13.960660036511907 32 17.523363799119835 57.84079985183573 12.170929818939744 12.464906530104686 33 13.989175777494905 61.066018350026305 13.402398262009685 11.5424076104691 34 14.441311959266587 62.744037417355806 11.727318961791847 11.08733166158577 35 16.751086978889532 61.16832224551171 12.182982864097507 9.89760791150125 36 15.188306782336703 59.48030797000262 13.034927373053506 12.296457874607174 37 13.079905809861742 60.669737743375975 12.083030782301426 14.167325664460861 38 13.87158509302893 58.05011127018518 13.501468413672269 14.576835223113624 39 14.382810593744763 58.53046921622869 13.219250770953925 13.86746941907262 40 15.103053536098871 57.818751598498366 13.207785679218492 13.87040918618427 41 16.362155790018313 59.056099575791606 11.845791576391317 12.73595305779876 42 14.978407410564934 56.783659598486615 14.095301370225451 14.142631620723007 43 17.20969064830684 54.65820797676408 14.62122570649953 13.510875668429549 44 19.580612823852096 55.39403168480993 12.426983534364409 12.598371956973569 45 18.165114959592902 53.097191640478236 12.213850418769825 16.52384298115903 46 18.258599553743352 55.81383042835346 11.722027380990879 14.205542636912305 47 17.758545168051786 54.88368811422759 12.910869200941901 14.44689751677872 48 18.819801095357224 54.52444857318404 13.395930774364054 13.259819557094687 49 18.74983463809997 57.426292689093174 12.762998915225937 11.060873757580925 50 17.527773449787308 57.0864556109865 12.34378812510473 13.041982814121466 51 17.37372965313688 54.705832203972804 14.277566931147714 13.642871211742605 52 19.234896211522123 52.673865176400724 14.26904160652393 13.82219700555322 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 1.0 8 2.0 9 17.5 10 33.0 11 333.0 12 633.0 13 685.0 14 1591.5 15 2446.0 16 2694.5 17 2943.0 18 2875.5 19 2808.0 20 3105.5 21 3403.0 22 3398.0 23 3393.0 24 4296.5 25 5200.0 26 7399.5 27 9599.0 28 13197.5 29 16796.0 30 19937.0 31 23078.0 32 23687.0 33 24296.0 34 23498.0 35 22700.0 36 20356.5 37 18013.0 38 17367.5 39 15094.5 40 13467.0 41 12509.5 42 11552.0 43 12116.5 44 12681.0 45 12330.0 46 11979.0 47 15329.5 48 18680.0 49 17466.0 50 16252.0 51 16314.5 52 16377.0 53 18533.0 54 20689.0 55 19425.0 56 18161.0 57 15848.5 58 13536.0 59 12498.0 60 11460.0 61 8966.5 62 6473.0 63 6748.0 64 5343.0 65 3663.0 66 3750.0 67 3837.0 68 2459.0 69 1081.0 70 636.5 71 192.0 72 141.0 73 90.0 74 87.5 75 85.0 76 61.0 77 37.0 78 30.0 79 23.0 80 18.0 81 13.0 82 8.0 83 3.0 84 4.0 85 5.0 86 3.5 87 2.0 88 1.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 340163.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.21963808944283 #Duplication Level Percentage of deduplicated Percentage of total 1 87.6967352605295 38.77917894846294 2 5.36596449710542 4.745620161256015 3 1.610528105262067 2.136509098426941 4 0.7697988903184924 1.3616091332615372 5 0.47864483192347773 1.058275062051919 6 0.3462052621001555 0.9185442836837745 7 0.2669036668024502 0.826166848552471 8 0.25607264658103635 0.9058751805135382 9 0.22801362697040528 0.9074412057683289 >10 2.6458240480030004 25.108232832387788 >50 0.23264989736976205 6.771896857001181 >100 0.08066085266974558 7.308684571997009 >500 0.015332228193422713 4.865578266733187 >1k 0.006666186171053354 4.306387549903376 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTAACGCCGGGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAAGC 2105 0.6188209770022018 No Hit TTCAAACGCCGAGAGACCCAACCTTCGGGAGGCATCACGCTTTAGACTACCA 2039 0.5994185140653158 No Hit ACCGAACGCCGGGTAACACCGGGGTCTTATTCTTAGTCATTCAGGAAGTTTT 1674 0.492117014490112 No Hit CTGCAACGCCGGAGACAGAAAAAGGCCAGGCGCGGTGGCTCATGCCCATAAT 1629 0.4788880624876897 No Hit GTTGAACGCCGGGGGGCCAACATAGTGAAACCCCATCTCTACTAAAAAATAC 1401 0.41186137234208303 No Hit GGACAACGCCGGGAGAGTGGGTAACGCCGGGAAAACCCCCAACACTCCGATG 1353 0.3977504902061659 No Hit AGTTAACGCCGGGAGAGTTTGAAACGCCGGGGCATTTTCGCTATTGTTCAAT 1230 0.36159135473287807 No Hit AGTTAACGCCCGGGCAGCACTTTGGGAGGCCGAGGCAGGAGGATCACCTGAG 1124 0.33042982334939425 No Hit ATAGAACGCCGGGGGTACACAATTGCCTATAATGAGCAAAATTGAATTAGGA 1049 0.3083815700120236 No Hit CGTAAACGCCGGGTGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCACCT 1005 0.2954465947207662 No Hit CCACAACGCCGGTATCCACCAGGGACTAGGACTAGGAGGCTATAGTTCTGTC 969 0.28486343311882834 No Hit CTAGAACGCCGGGCAGGGATGCTGGGATGGTTTAACATATGCAAGTCAATAA 935 0.2748682249392203 No Hit AATAAACGCCGGGACGGGAGACATCTCATATGTACCCCGAATTGAGTAAATT 931 0.2736923180945605 No Hit CGCAAACGCCGGGAGAGTTAAAAACGCCGGGGGGAATTCTCTTGCTTCAACA 911 0.26781278387126173 No Hit TCACAACGCCGGGAGAGTTGTCAACGCGGGGCGGGCGCCTGTAGTGCCAGCT 869 0.2554657620023342 No Hit AAACAACGCCGGTCTGTTTCTGATTCACATTGCTAAAGAACCACAGTGGATA 843 0.24782236751204567 No Hit GTTAAACGCCGGGTGCTCCCCAAGTTAAGAAAATGAGATGTTTTATATAAGC 833 0.24488260040039628 No Hit ACATAACGCCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTTC 801 0.23547534564311817 No Hit GGCCAACGCCGGGGTATCAACGGGGCACAAGCCTTGTCCTGTCCTGGGTTCT 756 0.22224639364069576 No Hit TACCAACGCCGGGCGTTTTTGATGTAAATATTAAGAACTTGGTCTATTTCTG 745 0.21901264981788143 No Hit CACAAACGCCGGGGAAACCTAGAAGAAAGAGATAAGTTCCTAGACACTTCTA 712 0.20931141834943834 No Hit GTACAACGCCGGGAGAATAGTCAAACTCATAGAAACGGAAAGTACAATGGTG 708 0.2081355115047786 No Hit CTAGAACGCCGGGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATA 678 0.19931621016983037 No Hit GCTTAACGCCGGGGGAAGAGCTAGCATCTCTGACGAAAAACAGCAGACGGAA 657 0.1931426992353666 No Hit GTATAACGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT 650 0.191084862257212 No Hit GAATAACGCCCGGCATATATATGTATCTTTTTGTTTTTTTGAGATGTAGTCC 649 0.19079088554604706 No Hit ATTCAACGCCGGGATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGAT 600 0.17638602669896492 No Hit CACAAACGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT 597 0.17550409656547009 No Hit CTACAACGCCGGGAGTAATATAGATTGGCGCTAGTAGATCACAGAACAACCG 573 0.16844865549751148 No Hit TTCCAACGCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC 564 0.16580286509702702 No Hit AGCCAACGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT 516 0.1516919829611098 No Hit CTCTAACGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT 506 0.14875221584946038 No Hit GAATAACGCCGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGAGC 503 0.14787028571596558 No Hit AACCAACGCCGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA 480 0.1411088213591719 No Hit ACACAACGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT 476 0.13993291451451215 No Hit TGCTAACGCCGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGAGC 473 0.13905098438101732 No Hit TTTCAACGCCGGGCTGCTGGCCGTGGGCGGACTCGGCTTCGTGATGACACTG 452 0.13287747344655357 No Hit GAATAACGCCGGGACTCCAGCCTGGGTAACAGAGCAAGACTCTGTCTCAAAA 424 0.1246461255339352 No Hit TTTCAACGCCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTGC 421 0.12376419540044037 No Hit TCGAAACGCCGGGAAGCAAACACACCAAAAACAAACCAATACTAAACTCCCT 418 0.12288226526694554 No Hit CCTGAACGCCAGGGTTAGAACTTATTTCCAAGTCAAAAATTAGTATCTCCAT 411 0.12082442828879095 No Hit AGGCAACGCCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTGC 404 0.11876659131063638 No Hit AGGCAACGCCGGGATACTGTTGGTCTTTACAATTCACCTCATCTTATAGATT 403 0.11847261459947142 No Hit CACCAACGCCGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGAG 381 0.11200512695384271 No Hit GTTAAACGCCGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGA 349 0.10259787219656458 No Hit GCACAACGCCGGGTATGACCTAAAGTAGCACTGTTTCAGCCAACCCATGAGA 348 0.10230389548539964 No Hit GGCAAACGCCGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 345 0.10142196535190481 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.06849657370143138 0.0 0.0 0.0 0.0 12 0.11935454473296625 0.0 0.0 0.0 0.0 13 0.14316665833732653 0.0 0.0 0.0 0.0 14 0.2704585742717462 0.0 0.0 0.0 0.0 15 0.40186616416247506 0.0 0.0 0.0 0.0 16 0.5944209099755118 0.0 0.0 0.0 0.0 17 0.7422911956914773 0.0 0.0 0.0 0.0 18 0.9283784538588853 0.0 0.0 0.0 0.0 19 1.1297525010068703 0.0 0.0 0.0 0.0 20 1.3605242192713494 0.0 0.0 0.0 0.0 21 1.5921778676693232 0.0 0.0 0.0 0.0 22 1.8150122147323489 0.0 0.0 0.0 0.0 23 1.9981597057881075 0.0 0.0 0.0 0.0 24 2.195712055690948 0.0 0.0 0.0 0.0 25 2.432363308178726 0.0 0.0 0.0 0.0 26 2.7069375564067815 0.0 0.0 0.0 0.0 27 2.9597575280086312 0.0 0.0 0.0 0.0 28 3.2305100789915424 0.0 0.0 0.0 0.0 29 3.5618218324744313 0.0 0.0 0.0 0.0 30 3.997495318420875 0.0 0.0 0.0 0.0 31 4.374373462134329 0.0 0.0 0.0 0.0 32 4.631309107692489 0.0 0.0 0.0 0.0 33 4.845618130131731 0.0 0.0 0.0 0.0 34 5.061691012837963 0.0 0.0 0.0 0.0 35 5.258655409318473 0.0 0.0 0.0 0.0 36 5.478843965981015 0.0 0.0 0.0 0.0 37 5.708145800689669 0.0 0.0 0.0 0.0 38 5.938035588820654 0.0 0.0 0.0 0.0 39 6.18291818922105 0.0 0.0 0.0 0.0 40 6.439559858068044 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCATA 70 0.0 46.000004 42 GAGAATA 70 0.0 46.000004 13 TTTTGAG 70 0.0 46.000004 37 GGGTCTC 35 1.0167241E-7 46.000004 11 GCCTTGT 145 0.0 46.000004 31 GTCATAC 70 0.0 46.000004 43 CACACCG 70 0.0 46.000004 21 ATAAGTT 140 0.0 46.000004 32 TTACTTC 70 0.0 46.000004 28 GAAACCT 145 0.0 46.000004 14 CTGGGTT 145 0.0 46.000004 44 TCCTAGA 140 0.0 46.000004 38 TAAGTTC 140 0.0 46.000004 33 TTCCGCC 70 0.0 46.000004 38 CACGCCA 70 0.0 46.000004 31 CACAAGC 145 0.0 46.000004 26 CCGCCCA 70 0.0 46.000004 40 AGGGTTA 70 0.0 46.000004 11 GATGTAG 70 0.0 46.000004 43 ACACTTC 140 0.0 46.000004 44 >>END_MODULE