##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528116_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1442561 Sequences flagged as poor quality 0 Sequence length 52 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.723101484096688 31.0 31.0 34.0 27.0 34.0 2 31.580118275760956 31.0 31.0 34.0 28.0 34.0 3 31.861292520732224 31.0 31.0 34.0 30.0 34.0 4 35.50743157481729 37.0 35.0 37.0 33.0 37.0 5 35.23682326085344 37.0 35.0 37.0 33.0 37.0 6 35.56513520052185 37.0 35.0 37.0 33.0 37.0 7 35.719588287774314 37.0 35.0 37.0 33.0 37.0 8 35.73258461860539 37.0 35.0 37.0 33.0 37.0 9 37.19274540210085 39.0 37.0 39.0 33.0 39.0 10 37.623260992082834 39.0 37.0 39.0 35.0 39.0 11 37.79751428189172 39.0 37.0 39.0 35.0 39.0 12 37.64975761856864 39.0 37.0 39.0 35.0 39.0 13 37.53538325242399 39.0 37.0 39.0 35.0 39.0 14 37.784373069838985 40.0 38.0 40.0 33.0 40.0 15 36.99578943282121 39.0 36.0 40.0 31.0 40.0 16 36.72398463565839 38.0 35.0 40.0 31.0 40.0 17 36.47376506088824 39.0 35.0 40.0 31.0 40.0 18 36.666954811616286 39.0 35.0 40.0 31.0 40.0 19 36.85557491156353 39.0 35.0 40.0 31.0 40.0 20 36.954051163174384 39.0 35.0 40.0 32.0 40.0 21 36.896906266008855 39.0 35.0 40.0 31.0 40.0 22 36.98068019307329 39.0 35.0 40.0 31.0 40.0 23 36.948010517406196 39.0 35.0 40.0 31.0 40.0 24 36.95067452953462 39.0 35.0 40.0 31.0 40.0 25 37.04155387536471 39.0 36.0 40.0 31.0 40.0 26 36.79135579015376 39.0 35.0 40.0 31.0 40.0 27 36.57708963433782 39.0 35.0 40.0 31.0 40.0 28 36.08649339611982 38.0 35.0 40.0 30.0 40.0 29 35.72280340311432 37.0 35.0 40.0 30.0 40.0 30 35.37579346731265 37.0 34.0 40.0 29.0 40.0 31 35.239647404858445 36.0 34.0 40.0 29.0 40.0 32 35.16844764276866 36.0 34.0 40.0 29.0 40.0 33 34.9240621367138 36.0 34.0 40.0 27.0 40.0 34 34.62366166838005 36.0 34.0 40.0 25.0 40.0 35 34.4033985391259 35.0 33.0 40.0 24.0 40.0 36 34.11132492837391 35.0 33.0 40.0 23.0 40.0 37 33.81865723529196 35.0 33.0 40.0 21.0 40.0 38 33.328699444945485 35.0 33.0 40.0 18.0 40.0 39 32.78312320934782 35.0 33.0 40.0 15.0 40.0 40 32.13409900863811 35.0 31.0 40.0 12.0 40.0 41 31.41147098805527 35.0 30.0 40.0 10.0 40.0 42 30.65051945810264 35.0 26.0 39.0 9.0 40.0 43 29.9430228600385 35.0 23.0 39.0 8.0 40.0 44 29.296831121872835 35.0 21.0 39.0 8.0 40.0 45 28.866960911878248 35.0 20.0 39.0 8.0 40.0 46 28.449944231127834 35.0 17.0 38.0 8.0 40.0 47 27.928592967645734 35.0 15.0 38.0 8.0 40.0 48 27.529166530912732 34.0 13.0 38.0 8.0 40.0 49 27.251846542364586 34.0 11.0 37.0 8.0 40.0 50 26.889559609610963 33.0 10.0 37.0 8.0 40.0 51 26.51455917635372 33.0 10.0 36.0 8.0 40.0 52 25.694909262069334 33.0 10.0 35.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 3.0 14 8.0 15 30.0 16 91.0 17 320.0 18 807.0 19 1912.0 20 3823.0 21 6261.0 22 9819.0 23 13863.0 24 19505.0 25 26617.0 26 35457.0 27 46401.0 28 59258.0 29 74646.0 30 85909.0 31 84365.0 32 71822.0 33 68021.0 34 83901.0 35 121053.0 36 143339.0 37 182500.0 38 249830.0 39 52999.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.17264295929254 23.71227282589783 37.70585784587272 6.4092263689369116 2 19.75458923400813 22.09050431836158 36.99268176527717 21.16222468235312 3 20.288639440550522 21.81904266093427 39.41004921109055 18.482268687424657 4 22.125858109293127 22.794391363692764 32.54046102729798 22.53928949971613 5 0.0 100.0 0.0 0.0 6 0.0 0.0 0.0 100.0 7 0.0 0.0 100.0 0.0 8 0.0 0.0 100.0 0.0 9 0.0 100.0 0.0 0.0 10 0.0 0.0 100.0 0.0 11 99.59717474685645 0.24782314231425917 0.08665144836162908 0.06835066246765302 12 98.8593896549262 0.6530746360119261 0.16269675944379475 0.3248389496180751 13 95.58971856302783 2.920015167469521 0.7001437027619629 0.7901225667406786 14 47.73323277143913 33.47088961922581 10.947613307166906 7.8482643021681575 15 29.02317475656142 43.87752060398139 18.100309103046598 8.998995536410593 16 32.36230564946647 40.93248049822503 15.645300268064922 11.059913584243578 17 18.139475557706053 42.62876925135228 18.90069120127329 20.331063989668372 18 16.00937499350114 50.100342377202765 20.317754327200028 13.572528302096066 19 21.586331531214277 48.214876182012404 19.765957904033176 10.43283438274014 20 17.101737812127183 48.30991549057544 21.79110623398248 12.797240463314896 21 20.301047927955906 48.05204078025123 14.809425736589303 16.837485555203557 22 22.315867405260505 51.25356917315802 15.14597996202587 11.28458345955561 23 13.684689936855357 50.840692352004524 18.669574458203154 16.80504325293696 24 15.959047832292708 55.632378804085235 14.649640465810457 13.7589328978116 25 18.133028689947945 49.637069073682156 18.325117620676007 13.904784615693893 26 16.018248101813374 51.329822447716246 16.205761836067936 16.44616761440244 27 18.117223465766784 53.451049903608926 16.136717962013392 12.295008668610894 28 19.886230114359115 51.702978244940766 14.077810227782395 14.33298141291772 29 19.489227838545474 51.208649062327346 13.2754871371124 16.02663596201478 30 20.99717100351389 51.405451831846285 15.422086137085364 12.175291027554467 31 16.980287142103524 54.120137727278085 13.45939617111512 15.440178959503273 32 16.39078000860969 59.41967098791663 14.091050569092053 10.09849843438163 33 19.461568696228444 57.22447785570246 12.696170213945893 10.617783234123202 34 16.098314040099517 56.170103032038156 14.323068487225148 13.408514440637173 35 20.22514125919112 53.60632929907296 15.986914938085809 10.181614503650106 36 17.414237595498562 54.20096619830981 17.41707976300482 10.967716443186806 37 17.59267025796483 55.49616272726075 15.340980381418879 11.57018663335554 38 14.84533409679036 53.83335609378044 20.47837145188314 10.842938357546059 39 17.67606361186806 55.527842496781766 16.30891172019762 10.487182171152554 40 19.59743816725948 55.64970909375756 13.625697630810759 11.127155108172202 41 22.345606182338216 52.03717555098189 13.465427111921091 12.151791154758794 42 20.913500364975903 49.71560994647714 14.304629059013795 15.06626062953317 43 23.767591110531892 47.26122500192366 16.283817460752093 12.687366426792352 44 21.960873751612585 47.604226095118335 16.05311664463409 14.38178350863499 45 21.478259844817654 49.67325471851797 14.521327001076559 14.327158435587819 46 24.394531669717953 45.36549927524728 15.880922886449863 14.3590461685849 47 25.89859284979977 45.80215325383121 13.742642425519612 14.556611470849411 48 26.65717428933681 45.135283707240106 13.439085071619155 14.768456931803925 49 25.866774437961375 47.22372225507275 12.701022695054142 14.20848061191173 50 22.8207334039947 49.69668527015496 12.975049235352959 14.507532090497385 51 21.356670532476617 48.42582046790396 14.048764662291576 16.16874433732785 52 23.790397771740675 45.62476040874528 15.000266886460953 15.58457493305309 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 4.0 2 8.0 3 17.0 4 26.0 5 66.0 6 106.0 7 2100.0 8 4094.0 9 9800.0 10 15506.0 11 19249.0 12 22992.0 13 22620.0 14 20520.5 15 18793.0 16 19911.0 17 21029.0 18 25434.5 19 29840.0 20 38904.0 21 47968.0 22 59036.0 23 70104.0 24 79646.5 25 89189.0 26 90821.5 27 92454.0 28 86777.5 29 81101.0 30 75951.5 31 70802.0 32 66333.0 33 61864.0 34 58625.5 35 55387.0 36 55469.0 37 55551.0 38 59622.5 39 67066.5 40 70439.0 41 69536.5 42 68634.0 43 68889.5 44 69145.0 45 73923.0 46 78701.0 47 71877.0 48 65053.0 49 57484.5 50 49916.0 51 47144.5 52 44373.0 53 44320.0 54 44267.0 55 42421.5 56 40576.0 57 34721.0 58 28866.0 59 24279.5 60 19693.0 61 18410.0 62 17127.0 63 12943.0 64 7511.0 65 6263.0 66 5425.5 67 4588.0 68 3400.0 69 2212.0 70 1634.5 71 1057.0 72 575.5 73 94.0 74 60.5 75 27.0 76 18.0 77 9.0 78 7.0 79 5.0 80 2.5 81 0.0 82 0.5 83 1.0 84 0.5 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1442561.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.812517174179106 #Duplication Level Percentage of deduplicated Percentage of total 1 88.58058397194831 38.809383565698 2 5.059136890965775 4.433070438439222 3 1.6202835563405917 2.1296610341763653 4 0.7954692354556095 1.3940603815972006 5 0.5130417654653271 1.1238825580260405 6 0.36266652862492565 0.9533600108327686 7 0.29452360972992475 0.9032674496645486 8 0.20596140757662978 0.7218950165335356 9 0.19676816179534962 0.7758817621191367 >10 2.0853536055607607 19.38882555866485 >50 0.1525854101687255 4.459525107970781 >100 0.09597794544489816 9.65126361375807 >500 0.02569106367723604 7.8198784145946565 >1k 0.011956847246009228 7.436045087924802 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTTAACTTATGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAA 3904 0.2706298035230399 No Hit CTTTACTTATGGGGGGTGGAGTGCAGTGGCTCTATCTCAGCTCACTGCAACC 2760 0.191326397982477 No Hit CTTCACTTATGGAGACTTGAGCCACCAGTGCTGAACACCCAGGAGGTTGCTG 2321 0.16089440931787286 No Hit ACTGACTTATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2245 0.15562600125748582 No Hit TAGCACTTATGGGGTTGCTTTTCTTTTGGAATGGCCCTGTGGTCACAGAGCT 2215 0.15354636649680672 No Hit TTTCACTTATGGGCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAAC 2185 0.15146673173612762 No Hit TGCTACTTATGGGGCTGAGGCGGGCAGATCACTTGAGGTCACGAGTTTGAGA 1960 0.1358694710310344 No Hit GGCCACTTATGGAGAGTATAAACTTATGGGGGCTGGTGAGATGGCTCAGTGG 1949 0.13510693828545206 No Hit GACGACTTATGGGGCTCTCCGCCAGATCGCCGCCATCATGGACACGAGTCGC 1897 0.13150223803360828 No Hit AGCGACTTATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACT 1865 0.1292839609555506 No Hit CAATACTTATGGGCCTTTTCCGGCGGTGACGACCTCCCTACGAGAACATGCC 1847 0.1280361800991431 No Hit AGTTACTTATGGGAAGGAGGCTGCTGTTTGCAACCATTGCACACCAAAGTCC 1807 0.125263333751571 No Hit TAGTACTTATGGGGCTTTCCGGCGGTGACGACCTCCCTACGAGAACATGCCT 1802 0.12491672795812447 No Hit TAAAACTTATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGA 1743 0.12082677959545558 No Hit GGGCACTTATGGGAAAGTGTTACGACCACTTCATCAGATGAAGTGTTACCAT 1714 0.11881646599346579 No Hit TTGCACTTATGGGGGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACT 1670 0.11576633501113644 No Hit TTGGACTTATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 1647 0.11417194836128247 No Hit AATTACTTATGGGAGTATCCTTCAGGATGCCCTCTGAGGGCTGATAGAGATC 1591 0.11028996347468148 No Hit ATTGACTTATGGGCAATCTTACCTCAAGAAACAAGAAAAATTTCAGATAAAC 1524 0.10564544584249816 No Hit AGGCACTTATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAAC 1511 0.10474427077953723 No Hit AGTGACTTATGGGCAGCACTCAGCAGGCTGCCATGACAGCAGGCTTTCCTCC 1503 0.10418970151002281 No Hit GCTAACTTATGGGGAGACCACCCTGGCCAACATGGTGAAACCCCGTCTCTAC 1497 0.10377377455788699 No Hit CAAAACTTATGGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGGC 1487 0.10308056297099394 No Hit GGCCACTTATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACT 1470 0.10190210327327578 No Hit CTTTACTTATGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 1468 0.10176346095589718 No Hit CAGGACTTATGGGGACGACTGGCAGGAGGCGGAGATGACAGACCGCTCCAGG 1457 0.10100092821031484 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.025648828715042205 0.0 0.0 0.0 0.0 12 0.07729309193857313 0.0 0.0 0.0 0.0 13 0.20581452014854137 0.0 0.0 0.0 0.0 14 0.6762279030141533 0.0 0.0 0.0 0.0 15 1.05562260452071 0.0 0.0 0.0 0.0 16 1.355991185121461 0.0 0.0 0.0 0.0 17 1.5688764634563115 0.0 0.0 0.0 0.0 18 1.7998545642090698 0.0 0.0 0.0 0.0 19 1.9987369684886809 0.0 0.0 0.0 0.0 20 2.2007388249093105 0.0 0.0 0.0 0.0 21 2.394214178811156 0.0 0.0 0.0 0.0 22 2.5878974961890693 0.0 0.0 0.0 0.0 23 2.7760351208718386 0.0 0.0 0.0 0.0 24 3.000843638501249 0.0 0.0 0.0 0.0 25 3.238615212805559 0.0 0.0 0.0 0.0 26 3.5122951473109283 0.0 0.0 0.0 0.0 27 3.767119726652807 0.0 0.0 0.0 0.0 28 4.0335902606544884 0.0 0.0 0.0 0.0 29 4.334582731683444 0.0 0.0 0.0 0.0 30 4.681327167447338 0.0 0.0 0.0 0.0 31 4.975248880289985 0.0 0.0 0.0 0.0 32 5.199294865173813 0.0 0.0 0.0 0.0 33 5.39152243821925 0.0 0.0 0.0 0.0 34 5.5721733777635745 0.0 0.0 0.0 0.0 35 5.7326518601293115 0.0 0.0 0.0 0.0 36 5.888208540228108 0.0 0.0 0.0 0.0 37 6.041408300931469 0.0 0.0 0.0 0.0 38 6.190934040224295 0.0 0.0 0.0 0.0 39 6.343925837451588 0.0 0.0 0.0 0.0 40 6.50183943694582 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTTATC 20 6.3119916E-4 46.000004 41 ATCCTAG 80 0.0 46.000004 40 CTAGACC 155 0.0 46.000004 46 TCGTTAA 20 6.3119916E-4 46.000004 25 CTCACCG 40 5.6134013E-9 46.000004 35 ATCTCAA 20 6.3119916E-4 46.000004 30 GCCCAAT 80 0.0 46.000004 14 TCACCGT 40 5.6134013E-9 46.000004 36 GATCGTT 20 6.3119916E-4 46.000004 23 GATGTAC 40 5.6134013E-9 46.000004 13 ATTAGCC 40 5.6134013E-9 46.000004 16 TTGTGCC 40 5.6134013E-9 46.000004 31 CTCCGAA 40 5.6134013E-9 46.000004 23 CGTGCTA 40 5.6134013E-9 46.000004 40 TGAAGGT 40 5.6134013E-9 46.000004 15 ACGTTCT 40 5.6134013E-9 46.000004 17 CCGATCC 160 0.0 46.000004 42 TTAGCGA 20 6.3119916E-4 46.000004 38 TCATTCA 40 5.6134013E-9 46.000004 22 CGTGCAC 80 0.0 46.000004 40 >>END_MODULE