##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528115_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1436862 Sequences flagged as poor quality 0 Sequence length 52 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.75447537759367 31.0 31.0 34.0 27.0 34.0 2 31.604535439033114 31.0 31.0 34.0 28.0 34.0 3 31.880552899304178 31.0 31.0 34.0 30.0 34.0 4 35.546346134841066 37.0 35.0 37.0 33.0 37.0 5 35.37382573970221 37.0 35.0 37.0 33.0 37.0 6 35.61356483782019 37.0 35.0 37.0 33.0 37.0 7 35.70889410395709 37.0 35.0 37.0 33.0 37.0 8 35.744185593327686 37.0 35.0 37.0 33.0 37.0 9 37.18028871248596 39.0 37.0 39.0 33.0 39.0 10 37.61110252759138 39.0 37.0 39.0 35.0 39.0 11 37.78603025203534 39.0 37.0 39.0 35.0 39.0 12 37.658906004891215 39.0 37.0 39.0 35.0 39.0 13 37.524878519997046 39.0 37.0 39.0 35.0 39.0 14 37.73966045451825 40.0 38.0 40.0 33.0 40.0 15 36.9913756505496 39.0 36.0 40.0 31.0 40.0 16 36.69552886776879 38.0 35.0 40.0 31.0 40.0 17 36.48307631491403 39.0 35.0 40.0 31.0 40.0 18 36.584170922468545 39.0 35.0 40.0 31.0 40.0 19 36.85532848666051 39.0 35.0 40.0 31.0 40.0 20 36.958625115007564 39.0 35.0 40.0 32.0 40.0 21 36.95206916182626 39.0 35.0 40.0 31.0 40.0 22 36.909154810970016 39.0 35.0 40.0 31.0 40.0 23 36.96253641616244 39.0 35.0 40.0 31.0 40.0 24 37.0648858415074 39.0 36.0 40.0 32.0 40.0 25 37.07894912663846 40.0 36.0 40.0 32.0 40.0 26 36.716327664034544 39.0 35.0 40.0 31.0 40.0 27 36.46061138787162 39.0 35.0 40.0 30.0 40.0 28 36.028439752738954 38.0 35.0 40.0 30.0 40.0 29 35.65402453401927 37.0 35.0 40.0 30.0 40.0 30 35.195354877503895 36.0 34.0 40.0 29.0 40.0 31 35.11651153694648 36.0 34.0 40.0 29.0 40.0 32 35.13013219084366 36.0 34.0 40.0 28.0 40.0 33 34.98216669380915 36.0 34.0 40.0 27.0 40.0 34 34.72364082284868 36.0 34.0 40.0 25.0 40.0 35 34.325749445667014 35.0 33.0 40.0 24.0 40.0 36 34.07959358657964 35.0 33.0 40.0 23.0 40.0 37 33.78981488827737 35.0 33.0 40.0 21.0 40.0 38 33.34144823928811 35.0 33.0 40.0 19.0 40.0 39 32.79912336744935 35.0 33.0 40.0 15.0 40.0 40 32.09101361160641 35.0 31.0 40.0 12.0 40.0 41 31.33818835768501 35.0 30.0 39.0 10.0 40.0 42 30.568732418283734 35.0 26.0 39.0 9.0 40.0 43 29.8991461949721 35.0 23.0 39.0 8.0 40.0 44 29.193739551884594 35.0 20.0 39.0 8.0 40.0 45 28.76621415278572 35.0 20.0 38.0 8.0 40.0 46 28.3505360988042 35.0 17.0 38.0 8.0 40.0 47 27.935853965098946 35.0 15.0 38.0 8.0 40.0 48 27.53279298916667 34.0 13.0 38.0 8.0 40.0 49 27.09285930033643 33.0 10.0 37.0 8.0 40.0 50 26.74171562752721 33.0 10.0 37.0 8.0 40.0 51 26.36968755524191 33.0 10.0 36.0 8.0 40.0 52 25.388744360975515 33.0 10.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 7.0 15 24.0 16 110.0 17 306.0 18 806.0 19 1868.0 20 3642.0 21 6314.0 22 9702.0 23 13968.0 24 19933.0 25 26719.0 26 36120.0 27 46882.0 28 59524.0 29 74658.0 30 86433.0 31 83627.0 32 71268.0 33 68128.0 34 84629.0 35 119821.0 36 142906.0 37 183086.0 38 249083.0 39 47295.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.08136898324265 23.75301177148536 37.6807236881482 6.484895557123788 2 19.765015707841115 22.079503807602958 37.087277692638544 21.068202791917386 3 20.27258010859776 21.791793505569775 39.457999446014995 18.477626939817462 4 22.09739000683434 22.718256868091714 32.56812414831765 22.616228976756293 5 0.0 100.0 0.0 0.0 6 0.0 0.0 0.0 100.0 7 0.0 0.0 100.0 0.0 8 0.0 0.0 100.0 0.0 9 0.0 100.0 0.0 0.0 10 0.0 0.0 100.0 0.0 11 99.59648177765158 0.24880607880227884 0.0851160375874649 0.0695961059586794 12 98.90622759875339 0.626712934157908 0.1526242603673839 0.31443520672131353 13 95.5926873979547 2.935772537654973 0.6909501399577691 0.7805899244325482 14 47.77222864826267 33.446496601622144 10.964588109366105 7.816686640749077 15 29.06256829117897 43.893498470973555 18.013142528649237 9.03079070919824 16 32.36740897873282 40.90921744746538 15.720785990582256 11.002587583219544 17 18.106540502845785 42.718785798497 18.840501036286017 20.334172662371195 18 16.014272769410006 50.13786988590414 20.31545130986831 13.53240603481754 19 21.630052155321806 48.26121088872836 19.718177528530923 10.390559427418918 20 17.1223819684841 48.35864543707051 21.74314582750466 12.775826766940737 21 20.316495251457688 48.03857294576654 14.744839796723694 16.900092006052077 22 22.287317779995576 51.265535590752634 15.155178437456069 11.291968191795734 23 13.666030558258205 50.83800671184846 18.67061694164088 16.825345788252456 24 15.883571282419606 55.70054744296947 14.612537599296244 13.803343675314677 25 18.10828040549475 49.69663057412612 18.280530767742484 13.914558252636649 26 15.954698502709377 51.37180884455152 16.189446168108002 16.484046484631094 27 18.10048564162738 53.34458006405626 16.20900267388239 12.345931620433975 28 19.90852287832791 51.762034210661845 14.042197510964865 14.287245400045375 29 19.46693558602009 51.22878884680644 13.285827031405939 16.018448535767526 30 20.965130958992585 51.42832088258997 15.458756651647827 12.147791506769613 31 16.8946635097873 54.14959822168029 13.502549305361267 15.453188963171133 32 16.38856062725578 59.47676255618146 14.029183039150595 10.105493777412168 33 19.471876909543155 57.265903058192094 12.617704414202615 10.644515618062139 34 16.026521684058732 56.30700791029341 14.262399590218127 13.404070815429737 35 19.985704959836088 53.673630453028885 16.21491834288888 10.125746244246143 36 17.33959141518114 54.28454507113418 17.4078651951266 10.96799831855808 37 17.56306451141446 55.495308526497325 15.367655348947915 11.573971613140301 38 14.836358676059358 53.84817748677327 20.432859940620602 10.88260389654678 39 17.706989258537007 55.53379517309247 16.278181203205317 10.4810343651652 40 19.590607866308666 55.65287411038777 13.652946490337973 11.103571532965589 41 22.352529331278856 52.00109683462991 13.493014638844928 12.153359195246308 42 20.91418660943083 49.62056203031328 14.317171725607608 15.148079634648282 43 23.879259107694406 47.175929212408704 16.242826381378308 12.701985298518577 44 21.923121357513807 47.55724627695631 16.211577729802862 14.308054635727022 45 21.394678124969552 49.668165766789016 14.58581269460811 14.35134341363332 46 24.30066352927421 45.47089421252702 15.890043720273765 14.338398537925007 47 26.024141497234947 45.84754833797539 13.610562461809137 14.517747702980524 48 26.652037565194153 45.13968634426966 13.371778222264908 14.836497868271275 49 25.64094533782646 47.23223246212928 12.930747698804756 14.196074501239506 50 22.867401323161165 49.66252848220636 12.998186325478716 14.471883869153753 51 21.37797505953947 48.37687961683168 14.056255924368518 16.188889399260333 52 23.938415797759284 45.460176412209385 15.052454585061056 15.548953204970276 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.5 2 1.0 3 16.0 4 31.0 5 51.0 6 71.0 7 2093.0 8 4115.0 9 9779.0 10 15443.0 11 19067.5 12 22692.0 13 22204.5 14 20137.5 15 18558.0 16 19888.5 17 21219.0 18 25516.0 19 29813.0 20 38584.0 21 47355.0 22 58520.0 23 69685.0 24 79631.0 25 89577.0 26 91022.0 27 92467.0 28 86670.0 29 80873.0 30 76027.0 31 71181.0 32 66393.0 33 61605.0 34 58418.0 35 55231.0 36 55280.0 37 55329.0 38 59554.0 39 67098.0 40 70417.0 41 69220.0 42 68023.0 43 68586.5 44 69150.0 45 73970.0 46 78790.0 47 71536.5 48 64283.0 49 56874.0 50 49465.0 51 46558.0 52 43651.0 53 43893.5 54 44136.0 55 41941.0 56 39746.0 57 34341.5 58 28937.0 59 24210.5 60 19484.0 61 18373.0 62 17262.0 63 12835.5 64 7364.0 65 6319.0 66 5464.0 67 4609.0 68 3416.5 69 2224.0 70 1642.5 71 1061.0 72 582.0 73 103.0 74 64.0 75 25.0 76 20.0 77 15.0 78 11.5 79 8.0 80 5.0 81 2.0 82 1.5 83 1.0 84 0.5 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1436862.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.37127140880453 #Duplication Level Percentage of deduplicated Percentage of total 1 88.82448392835812 39.41255284132175 2 4.93460219694269 4.379091467500544 3 1.548974312888467 2.06189878927322 4 0.7912191089659949 1.404295913110506 5 0.4916108774284358 1.090669983494883 6 0.35621235398362805 0.948335702266603 7 0.29820779814843135 0.9262301403506231 8 0.22899538867487002 0.8128653233805871 9 0.20011025017277534 0.799123159988999 >10 2.044577573313612 19.163350692496277 >50 0.15024854622209594 4.394391950335731 >100 0.09333007837355203 9.455374325681627 >500 0.02580114475506215 7.866816709371024 >1k 0.01162644177234282 7.285003001427694 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTTAACTTATGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAA 3743 0.260498224603337 No Hit CTTTACTTATGGGGGGTGGAGTGCAGTGGCTCTATCTCAGCTCACTGCAACC 2883 0.2006455734788727 No Hit CTTCACTTATGGAGACTTGAGCCACCAGTGCTGAACACCCAGGAGGTTGCTG 2493 0.17350309215498774 No Hit ACTGACTTATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2286 0.1590966982215411 No Hit TTTCACTTATGGGCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAAC 2234 0.1554777007116898 No Hit TAGCACTTATGGGGTTGCTTTTCTTTTGGAATGGCCCTGTGGTCACAGAGCT 2187 0.15220668373163185 No Hit TGCTACTTATGGGGCTGAGGCGGGCAGATCACTTGAGGTCACGAGTTTGAGA 1949 0.13564281051346613 No Hit GGCCACTTATGGAGAGTATAAACTTATGGGGGCTGGTGAGATGGCTCAGTGG 1934 0.13459886892408596 No Hit AGCGACTTATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACT 1897 0.13202381300361482 No Hit GACGACTTATGGGGCTCTCCGCCAGATCGCCGCCATCATGGACACGAGTCGC 1892 0.13167583247382142 No Hit AGTTACTTATGGGAAGGAGGCTGCTGTTTGCAACCATTGCACACCAAAGTCC 1794 0.12485541408987086 No Hit CAATACTTATGGGCCTTTTCCGGCGGTGACGACCTCCCTACGAGAACATGCC 1775 0.12353308807665593 No Hit TAGTACTTATGGGGCTTTCCGGCGGTGACGACCTCCCTACGAGAACATGCCT 1750 0.12179318542768895 No Hit TAAAACTTATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGA 1724 0.1199836866727633 No Hit TTGCACTTATGGGGGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACT 1682 0.11706065022249876 No Hit TTGGACTTATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 1653 0.11504236314969704 No Hit GGGCACTTATGGGAAAGTGTTACGACCACTTCATCAGATGAAGTGTTACCAT 1634 0.11372003713648214 No Hit AGGCACTTATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAAC 1548 0.10773477202403571 No Hit AATTACTTATGGGAGTATCCTTCAGGATGCCCTCTGAGGGCTGATAGAGATC 1541 0.10724759928232497 No Hit GGCCACTTATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACT 1517 0.10557729273931665 No Hit ATTGACTTATGGGCAATCTTACCTCAAGAAACAAGAAAAATTTCAGATAAAC 1504 0.1046725433618538 No Hit GCTAACTTATGGGGAGACCACCCTGGCCAACATGGTGAAACCCCGTCTCTAC 1462 0.1017495069115893 No Hit CAAAACTTATGGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGGC 1461 0.1016799108056306 No Hit CTTTACTTATGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 1445 0.10056637311029173 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.02644652026429817 0.0 0.0 0.0 0.0 12 0.07551177496516714 0.0 0.0 0.0 0.0 13 0.2006455734788727 0.0 0.0 0.0 0.0 14 0.6660347340245618 0.0 0.0 0.0 0.0 15 1.0435936088503976 0.0 0.0 0.0 0.0 16 1.3252490496651732 0.0 0.0 0.0 0.0 17 1.5430848613158397 0.0 0.0 0.0 0.0 18 1.779850813787267 0.0 0.0 0.0 0.0 19 1.972840815610685 0.0 0.0 0.0 0.0 20 2.1731384085597645 0.0 0.0 0.0 0.0 21 2.366963563654686 0.0 0.0 0.0 0.0 22 2.5625286213985756 0.0 0.0 0.0 0.0 23 2.753430740043233 0.0 0.0 0.0 0.0 24 2.963193403402693 0.0 0.0 0.0 0.0 25 3.1941828790795497 0.0 0.0 0.0 0.0 26 3.468948305404416 0.0 0.0 0.0 0.0 27 3.724505206484687 0.0 0.0 0.0 0.0 28 3.9964171924652474 0.0 0.0 0.0 0.0 29 4.29721156241866 0.0 0.0 0.0 0.0 30 4.642547440185627 0.0 0.0 0.0 0.0 31 4.926708340814915 0.0 0.0 0.0 0.0 32 5.158532969763276 0.0 0.0 0.0 0.0 33 5.349017511772181 0.0 0.0 0.0 0.0 34 5.523077372774838 0.0 0.0 0.0 0.0 35 5.680503764453372 0.0 0.0 0.0 0.0 36 5.830483372794325 0.0 0.0 0.0 0.0 37 5.979210251228023 0.0 0.0 0.0 0.0 38 6.124735708787622 0.0 0.0 0.0 0.0 39 6.279378256227807 0.0 0.0 0.0 0.0 40 6.426504424224456 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTGTGT 55 1.8189894E-12 46.000004 46 CTTAACG 35 1.0198164E-7 46.000004 31 CTGCTCA 55 1.8189894E-12 46.000004 39 ACAACAC 55 1.8189894E-12 46.000004 45 TTCTAAG 55 1.8189894E-12 46.000004 18 CTAGACC 140 0.0 46.000004 46 AGCGTCA 55 1.8189894E-12 46.000004 39 TAATAGG 70 0.0 46.000004 41 CTGTCTC 140 0.0 46.000004 25 GACAGAC 155 0.0 46.000004 37 CCTTAGG 55 1.8189894E-12 46.000004 27 ACAGTGT 35 1.0198164E-7 46.000004 29 GCCTTCG 145 0.0 46.000004 26 ACCGGTT 55 1.8189894E-12 46.000004 43 GCCTTAG 55 1.8189894E-12 46.000004 26 ACTGCAT 55 1.8189894E-12 46.000004 27 TCACCGA 35 1.0198164E-7 46.000004 36 CTCAATT 35 1.0198164E-7 46.000004 19 TAAAGTA 35 1.0198164E-7 46.000004 42 TCCTGTG 70 0.0 46.000004 18 >>END_MODULE