##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528105_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4803932 Sequences flagged as poor quality 0 Sequence length 59 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.385902215102128 31.0 30.0 31.0 28.0 33.0 2 31.163421755345414 31.0 31.0 33.0 30.0 34.0 3 31.604987331211184 31.0 31.0 34.0 30.0 34.0 4 35.48036087937964 37.0 35.0 37.0 33.0 37.0 5 35.080524453718326 35.0 35.0 37.0 33.0 37.0 6 35.48482971865547 37.0 35.0 37.0 33.0 37.0 7 35.15122986753351 37.0 35.0 37.0 32.0 37.0 8 35.28088407579458 37.0 35.0 37.0 32.0 37.0 9 35.22529044957339 37.0 34.0 39.0 30.0 39.0 10 36.73557327622456 37.0 35.0 39.0 33.0 39.0 11 36.087253316658106 37.0 35.0 39.0 32.0 39.0 12 36.82073434844623 39.0 37.0 39.0 33.0 39.0 13 36.69938292215627 39.0 37.0 39.0 32.0 39.0 14 37.006046088912164 39.0 36.0 40.0 31.0 40.0 15 36.269210305224966 38.0 36.0 40.0 30.0 40.0 16 35.94061323099494 38.0 35.0 40.0 30.0 40.0 17 36.088026433346684 38.0 35.0 40.0 30.0 40.0 18 36.265505839799566 38.0 35.0 40.0 30.0 40.0 19 36.53470719402356 39.0 35.0 40.0 30.0 40.0 20 36.49789942905104 39.0 35.0 40.0 30.0 40.0 21 36.40032206950473 39.0 35.0 40.0 30.0 40.0 22 36.374748643402945 39.0 35.0 40.0 30.0 40.0 23 36.29667010274084 38.0 35.0 40.0 30.0 40.0 24 36.31312724659716 38.0 35.0 40.0 30.0 40.0 25 36.35852360108345 39.0 35.0 40.0 30.0 40.0 26 35.98317274266164 38.0 35.0 40.0 29.0 40.0 27 35.7563362678739 38.0 35.0 40.0 27.0 40.0 28 35.60090734007059 38.0 34.0 40.0 27.0 40.0 29 35.527844274232024 38.0 34.0 40.0 27.0 40.0 30 35.34074608050239 38.0 34.0 40.0 27.0 40.0 31 35.36163625963065 38.0 34.0 40.0 27.0 40.0 32 35.3161730848813 38.0 34.0 40.0 27.0 40.0 33 35.076560201101934 38.0 33.0 40.0 26.0 40.0 34 34.92240647869287 38.0 33.0 40.0 25.0 40.0 35 34.811787718893605 38.0 33.0 40.0 25.0 40.0 36 34.53290825099106 37.0 33.0 40.0 25.0 40.0 37 34.51304951860268 37.0 33.0 40.0 25.0 40.0 38 34.40755073135923 37.0 33.0 40.0 24.0 40.0 39 34.086875084826346 37.0 33.0 40.0 23.0 40.0 40 33.87688543468143 36.0 33.0 39.0 23.0 40.0 41 33.51859268615792 36.0 32.0 39.0 22.0 40.0 42 33.30416521299635 36.0 32.0 39.0 21.0 40.0 43 33.02226426185883 35.0 32.0 39.0 21.0 40.0 44 32.72058784345823 35.0 31.0 39.0 20.0 40.0 45 32.51068541353208 35.0 31.0 39.0 20.0 40.0 46 32.288139798814804 35.0 31.0 38.0 18.0 40.0 47 31.86349869232121 35.0 30.0 38.0 15.0 40.0 48 31.609454921510128 35.0 30.0 38.0 15.0 40.0 49 31.31124607925341 35.0 29.0 38.0 13.0 40.0 50 30.859621243597953 34.0 28.0 38.0 12.0 40.0 51 30.573876357950112 34.0 28.0 37.0 10.0 40.0 52 29.875977636652642 34.0 26.0 37.0 10.0 39.0 53 29.760716013465636 34.0 26.0 37.0 10.0 39.0 54 29.62556630693357 34.0 26.0 36.0 9.0 39.0 55 29.38225874138102 33.0 26.0 36.0 9.0 39.0 56 29.05488566449317 33.0 25.0 36.0 9.0 39.0 57 28.6121067075887 33.0 23.0 35.0 8.0 39.0 58 28.309383646562857 33.0 23.0 35.0 8.0 38.0 59 27.521794230226405 32.0 22.0 35.0 8.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 13.0 14 59.0 15 244.0 16 825.0 17 2262.0 18 5018.0 19 9596.0 20 16538.0 21 25344.0 22 36476.0 23 51163.0 24 67906.0 25 88006.0 26 112015.0 27 137209.0 28 157852.0 29 173806.0 30 196730.0 31 235680.0 32 282638.0 33 339373.0 34 413665.0 35 490965.0 36 624034.0 37 723284.0 38 578449.0 39 34782.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.54435574858262 16.880942527912552 32.63310138444923 13.94160033905559 2 32.31852574099717 18.48814679308533 30.53402920774066 18.659298258176843 3 19.284889960973636 24.135312489852062 35.864683346891674 20.71511420228263 4 17.72679130345725 26.31852407569466 38.4863066338158 17.468377987032287 5 0.0 100.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 0.0 100.0 0.0 0.0 8 100.0 0.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 100.0 0.0 11 99.35200997849262 0.3414494626485138 0.2695083943736089 0.03703216448525916 12 99.34245530536235 0.4722589745233696 0.0777279944845181 0.10755772562975496 13 97.94720241668699 1.2248924422743703 0.29763119044982317 0.5302739505888093 14 51.79276059694433 33.65053876699337 5.9121361418105 8.644564494251792 15 28.71093928889918 31.95199265934655 19.463535287343785 19.873532764410488 16 31.035535057532037 20.061170724314998 25.730651474667006 23.17264274348596 17 21.743688295338067 20.566964728060263 27.404405391250336 30.284941585351334 18 21.271679116190654 27.45398977337731 28.677320994551962 22.597010115880074 19 24.505946378924598 24.817066519675965 26.354765221489394 24.322221879910042 20 24.08924605926978 24.00660542239149 27.76186257424127 24.14228594409746 21 29.985187134205898 25.65991775070921 18.70157612555715 25.653318989527747 22 29.039232861747415 27.831014260818016 19.691161323682348 23.438591553752218 23 23.621004627043014 27.959450716621305 23.4828261515775 24.936718504758186 24 23.726543173383803 31.891958503992146 19.80629617571606 24.57520214690799 25 27.2667056902554 25.03137013596362 24.393663357433038 23.308260816347943 26 25.283351221457757 26.924902350824283 18.88546715482234 28.906279272895617 27 26.532806875700988 32.124642896693786 17.957185905212647 23.385364322392572 28 25.310974426782064 32.36121993400406 17.577725912856383 24.750079726357495 29 26.18575783337483 29.950777821168163 17.53078519845826 26.33267914699875 30 28.67929854127827 29.830168287144783 18.06332812371199 23.42720504786496 31 25.652382256867917 29.893137538166652 18.192930291269736 26.2615499136957 32 25.29733976251121 34.52051361259901 17.580869171337145 22.601277453552633 33 26.492693901578956 34.19627921461003 18.050755089788947 21.260271794022064 34 25.01367629683351 36.03575154685787 16.4488589763552 22.501713179953423 35 25.22787583171452 35.531039989741735 17.888700339638447 21.352383838905297 36 26.474562920540922 33.52907576543548 18.639210546693832 21.357150767329763 37 25.331374382485016 34.3588751880751 18.72116424628825 21.588586183151634 38 24.292808474391396 36.069515555174384 19.086073657995158 20.55160231243906 39 26.018270033797315 34.76069186657929 19.582229723484843 19.63880837613855 40 25.63585412949226 35.732874653512994 17.936640235540384 20.69463098145436 41 25.853592432199292 37.02111103987317 16.539305718732074 20.58599080919547 42 26.172123169103976 37.16370256698055 16.431185953506418 20.232988310409056 43 26.675981258685592 34.97539099221221 17.132007697028186 21.21662005207401 44 26.070289920839844 34.126648753562705 18.20731434166845 21.595746983928997 45 24.972189448143727 33.13119336410257 20.646899248365713 21.249717939387985 46 25.23428724636402 31.985402790880467 20.44106785857918 22.33924210417633 47 26.956251670506575 31.189096764900086 19.65741813164716 22.197233432946177 48 26.550146838048498 31.950473070809494 19.23632557663181 22.2630545145102 49 26.41896263310971 31.36799188664619 19.86637196363312 22.346673516610977 50 25.24708925938169 33.48057382993764 19.42206925493533 21.850267655745334 51 24.167681807319504 33.2381682338551 20.388340217971447 22.20580974085395 52 25.114468731031163 33.156672492449935 19.6616022041944 22.067256572324503 53 23.92442274370245 33.22141112738481 20.385571652554617 22.468594476358117 54 24.194056035764035 32.53618077857888 19.95382116149854 23.31594202415854 55 24.740108727600642 32.907230993278006 19.867058900916998 22.485601378204354 56 26.38201373374977 32.224061456323696 20.057257263425043 21.33666754650149 57 26.411239792736453 31.752197991145586 19.198585658581347 22.637976557536618 58 25.21188892765343 31.83192434863774 18.72334995582785 24.23283676788098 59 26.051222207141983 29.355348910017874 20.36885617864699 24.224572704193147 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 2.0 2 4.0 3 10.0 4 134.5 5 253.0 6 1359.0 7 2465.0 8 4252.0 9 8091.5 10 10144.0 11 11149.0 12 12154.0 13 10230.5 14 8411.0 15 8515.0 16 9347.0 17 10179.0 18 13937.5 19 26245.5 20 34795.0 21 51851.0 22 68907.0 23 85261.5 24 101616.0 25 111303.5 26 121023.0 27 121055.0 28 118291.5 29 115528.0 30 116186.5 31 109335.5 32 101826.0 33 101973.5 34 102121.0 35 100009.5 36 102113.0 37 106328.0 38 113742.5 39 121157.0 40 126965.5 41 132774.0 42 139932.5 43 157026.0 44 166961.0 45 171144.5 46 175328.0 47 182429.5 48 202417.5 49 215304.0 50 220281.0 51 225258.0 52 237539.0 53 269633.5 54 289447.0 55 309922.5 56 330398.0 57 318538.5 58 274255.5 59 241832.0 60 233019.0 61 224206.0 62 206416.0 63 188626.0 64 159062.0 65 125460.0 66 121422.0 67 98431.5 68 75441.0 69 64161.0 70 39722.5 71 26564.0 72 22291.0 73 18018.0 74 12352.5 75 5113.5 76 3540.0 77 2241.5 78 943.0 79 662.0 80 381.0 81 302.5 82 168.5 83 113.0 84 109.0 85 105.0 86 61.0 87 10.5 88 4.0 89 2.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 4803932.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.550777700337342 #Duplication Level Percentage of deduplicated Percentage of total 1 87.17299251911626 22.273377533291097 2 5.6680562380650095 2.896464898636188 3 2.042543016871634 1.5656568770239052 4 1.1303537561493782 1.1552567018445634 5 0.7099119391266135 0.906940107171976 6 0.472229757291747 0.723950253122741 7 0.33024398696060436 0.5906593488392454 8 0.2521539272541904 0.5154183153231082 9 0.19060694539355805 0.4383140120902026 >10 1.429766512529572 7.50309219107002 >50 0.13875524244050624 2.4503080531430776 >100 0.2786694919349758 20.226141264155643 >500 0.14731075414733466 25.92658526229511 >1k 0.03631711780968043 12.711378756817624 >5k 8.87949090701233E-5 0.11645642517544069 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAACAAAGTTGGGACCTGCTGGGATTTATTCAAGCCAAACTTTAGTGATGAGGCTTGAG 5133 0.10684997206455045 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.008576307907772217 0.0 0.0 0.0 0.0 12 0.018193429882021644 0.0 0.0 0.0 0.0 13 0.042444397630940656 0.0 0.0 0.0 0.0 14 0.1874297970912161 0.0 0.0 0.0 0.0 15 0.35406412913421753 0.0 0.0 0.0 0.0 16 0.4330411004985083 0.0 0.0 0.0 0.0 17 0.4871842482366528 0.0 0.0 0.0 0.0 18 0.5746958949460567 0.0 0.0 0.0 0.0 19 0.6439308466481207 0.0 0.0 0.0 0.0 20 0.7083988699257192 0.0 0.0 0.0 0.0 21 0.7771758634385333 0.0 0.0 0.0 0.0 22 0.8348161464400412 0.0 0.0 0.0 0.0 23 0.8906870455285378 0.0 0.0 0.0 0.0 24 0.9641268860591699 0.0 0.0 0.0 0.0 25 1.034631630922336 0.0 0.0 0.0 0.0 26 1.1189375703069901 0.0 0.0 0.0 0.0 27 1.2277026402538587 0.0 0.0 0.0 0.0 28 1.3251852857201143 0.0 0.0 0.0 0.0 29 1.4211067100866541 0.0 0.0 0.0 0.0 30 1.5334729967035337 0.0 0.0 0.0 0.0 31 1.6480249928600155 0.0 0.0 0.0 0.0 32 1.7902001943408026 0.0 0.0 0.0 0.0 33 1.8935530311419895 0.0 0.0 0.0 0.0 34 1.9783793775598821 0.0 0.0 0.0 0.0 35 2.059812670121059 0.0 0.0 0.0 0.0 36 2.144347588600338 0.0 0.0 0.0 0.0 37 2.2277792441691515 0.0 0.0 0.0 0.0 38 2.312897018525658 0.0 0.0 0.0 0.0 39 2.4013662141762206 2.0816281329544217E-5 0.0 0.0 0.0 40 2.4979537595453056 2.0816281329544217E-5 0.0 0.0 0.0 41 2.588608664735471 2.0816281329544217E-5 0.0 0.0 0.0 42 2.6754958230049883 2.0816281329544217E-5 0.0 0.0 0.0 43 2.759947476358949 2.0816281329544217E-5 0.0 0.0 2.0816281329544217E-5 44 2.841255871232149 2.0816281329544217E-5 0.0 0.0 2.0816281329544217E-5 45 2.9226267149493372 2.0816281329544217E-5 0.0 0.0 2.0816281329544217E-5 46 3.001603686313628 2.0816281329544217E-5 0.0 0.0 2.0816281329544217E-5 47 3.074231691872408 2.0816281329544217E-5 0.0 0.0 2.0816281329544217E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGATTA 60 0.0 53.000004 40 CTAGTTT 15 0.006697556 53.000004 32 CGTAACG 30 7.0151873E-7 53.000004 27 CGATTTA 40 1.6025297E-9 53.0 34 TAACCTA 20 3.139251E-4 53.0 19 CGTACTT 40 1.6025297E-9 53.0 26 TCCGTAC 50 3.6379788E-12 53.0 46 CGTAATT 125 0.0 53.0 52 TACTAAG 70 0.0 53.0 21 ATAACGT 35 3.3451215E-8 53.0 35 ACGTAGT 85 0.0 53.0 29 CACGTTA 115 0.0 53.0 15 TAAGACG 20 3.139251E-4 53.0 17 TAGTTAT 190 0.0 51.605263 30 CGACGTA 125 0.0 50.88 46 TTGGGAC 22090 0.0 50.756676 9 ATTTACG 230 0.0 50.695652 28 CGCAATT 200 0.0 50.35 40 TATCGCT 200 0.0 50.35 34 CTAGTCA 95 0.0 50.21053 42 >>END_MODULE