##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528102_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3523881 Sequences flagged as poor quality 0 Sequence length 59 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.39779918788404 31.0 30.0 31.0 28.0 33.0 2 31.205105109962567 31.0 31.0 33.0 30.0 34.0 3 31.589108712808407 31.0 31.0 34.0 30.0 34.0 4 35.397590894811714 37.0 35.0 37.0 33.0 37.0 5 34.75711239965254 35.0 35.0 37.0 32.0 37.0 6 35.12264432311988 35.0 35.0 37.0 33.0 37.0 7 35.39103193325768 37.0 35.0 37.0 33.0 37.0 8 35.36414935691642 37.0 35.0 37.0 33.0 37.0 9 35.7414512578603 37.0 35.0 39.0 32.0 39.0 10 36.25455768795825 37.0 35.0 39.0 32.0 39.0 11 36.899778397738174 38.0 37.0 39.0 34.0 39.0 12 37.12052819036738 39.0 37.0 39.0 34.0 39.0 13 36.998676743056876 39.0 37.0 39.0 33.0 39.0 14 37.07932844497303 40.0 36.0 40.0 31.0 40.0 15 36.42474192516717 38.0 36.0 40.0 31.0 40.0 16 35.74906786012354 38.0 34.0 40.0 30.0 40.0 17 35.703013240231435 38.0 34.0 40.0 27.0 40.0 18 35.90994985358473 38.0 35.0 40.0 29.0 40.0 19 36.16526352620875 38.0 35.0 40.0 30.0 40.0 20 36.22401948306427 38.0 35.0 40.0 30.0 40.0 21 36.128753496500025 38.0 35.0 40.0 30.0 40.0 22 36.100918561097835 38.0 35.0 40.0 30.0 40.0 23 36.073179542669 38.0 34.0 40.0 30.0 40.0 24 36.089821705102985 38.0 35.0 40.0 30.0 40.0 25 36.062084673120346 38.0 35.0 40.0 30.0 40.0 26 35.7522370931368 38.0 34.0 40.0 29.0 40.0 27 35.59031306675793 38.0 34.0 40.0 27.0 40.0 28 35.4629685281654 38.0 34.0 40.0 27.0 40.0 29 35.36825676008923 38.0 34.0 40.0 27.0 40.0 30 35.15408806370022 37.0 34.0 40.0 27.0 40.0 31 35.11192971612832 37.0 34.0 40.0 27.0 40.0 32 35.08015452281164 37.0 34.0 40.0 27.0 40.0 33 34.80809227099326 37.0 33.0 40.0 26.0 40.0 34 34.541728281970926 37.0 33.0 40.0 25.0 40.0 35 34.425068553677036 37.0 33.0 40.0 24.0 40.0 36 34.15977894826755 37.0 33.0 40.0 23.0 40.0 37 34.09938133552183 36.0 33.0 40.0 23.0 40.0 38 33.80438385972739 36.0 33.0 40.0 22.0 40.0 39 33.562006776051746 36.0 33.0 40.0 21.0 40.0 40 33.4005155111651 36.0 32.0 39.0 21.0 40.0 41 33.0440491605704 35.0 32.0 39.0 19.0 40.0 42 32.767310246855665 35.0 31.0 39.0 18.0 40.0 43 32.43968539232738 35.0 31.0 39.0 15.0 40.0 44 32.03283936092053 35.0 31.0 39.0 14.0 40.0 45 31.771961368729535 35.0 30.0 39.0 10.0 40.0 46 31.456178855074846 35.0 30.0 39.0 10.0 40.0 47 31.06414717182561 35.0 29.0 38.0 10.0 40.0 48 30.82851662698031 35.0 28.0 38.0 9.0 40.0 49 30.51718176635363 35.0 27.0 38.0 9.0 40.0 50 30.11670115988593 35.0 26.0 38.0 9.0 40.0 51 29.899001697276383 34.0 26.0 38.0 9.0 40.0 52 29.31844491911049 34.0 24.0 37.0 8.0 40.0 53 29.23639390773979 34.0 23.0 37.0 8.0 40.0 54 29.1595232642646 34.0 24.0 37.0 8.0 40.0 55 29.022128726821364 34.0 23.0 37.0 8.0 40.0 56 28.74637310397258 34.0 23.0 37.0 8.0 39.0 57 28.424341514370095 33.0 22.0 36.0 8.0 39.0 58 28.190148305235052 33.0 21.0 36.0 8.0 39.0 59 27.400382986826173 33.0 18.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 5.0 13 12.0 14 58.0 15 249.0 16 829.0 17 2320.0 18 5250.0 19 9779.0 20 16218.0 21 24431.0 22 34687.0 23 48198.0 24 63852.0 25 82402.0 26 103087.0 27 123898.0 28 134651.0 29 131696.0 30 135598.0 31 155097.0 32 186108.0 33 226149.0 34 292975.0 35 345631.0 36 394196.0 37 469367.0 38 491867.0 39 45271.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.492931514997245 20.54924669703659 35.96219622626303 14.995625561703132 2 26.402083384768098 22.462024114889235 34.03801093169718 17.09788156864548 3 27.39471054783065 21.303925983879704 35.297786730028626 16.003576738261025 4 25.912878442830507 21.438578658019384 36.37705132494542 16.271491574204692 5 0.0 0.0 100.0 0.0 6 0.0 100.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 100.0 0.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 100.0 0.0 0.0 11 99.49061844029353 0.40903764911471185 0.07477551029674384 0.02556840029501564 12 99.03390608252663 0.7937555212562514 0.09591697335977009 0.07642142285735529 13 97.06539466003534 1.9056262115548168 0.5008965966784916 0.5280825317313496 14 52.0946649447016 33.17614868379494 6.354045440240462 8.375140931263001 15 34.987532212353365 27.781131088138334 19.397788971875045 17.833547727633253 16 34.841868950739254 23.78170545486638 22.015158854683232 19.36126673971113 17 25.22664641626661 24.947266948004206 25.444502808125474 24.381583827603713 18 21.312155546682764 30.858647042848496 28.578689234965655 19.25050817550309 19 23.348433162186804 31.543346668062856 27.877814262172873 17.23040590757747 20 25.34620209933309 32.818645124509025 24.42809504634237 17.407057729815506 21 27.09733955261259 33.83556368674198 19.559655958870348 19.50744080177509 22 26.792420061857936 33.37547437044554 22.837348934314182 16.99475663338234 23 23.035794909078938 38.20971820558072 20.624703274599796 18.129783610740542 24 24.63414627224926 36.324240233992015 21.740773879708197 17.30083961405053 25 25.42180056591014 35.45196333247348 23.16585037917001 15.960385722446361 26 24.5735596633371 34.126209142703736 23.074133320620078 18.226097873339082 27 25.794486249677558 35.54680194932803 19.85038654824042 18.808325252753992 28 26.077952121538722 34.33997913096384 19.89891259097569 19.683156156521743 29 25.714063556629753 34.902512315256956 17.673241519790253 21.710182608323038 30 24.707729914829702 35.09962453329156 19.714712273201055 20.477933278677686 31 22.372236746927605 36.74125204568486 19.039462456308826 21.847048751078713 32 21.183518966730148 39.39968460910002 19.00271320172276 20.41408322244707 33 27.565573298303775 38.14169661234304 18.21122790468804 16.081502184665148 34 25.138788738893282 37.82826378075764 19.312627185764786 17.720320294584297 35 26.338800884592867 36.83648795177817 19.329966023256745 17.49474514037222 36 28.01507769416731 36.044718876715756 20.553560123057505 15.386643306059428 37 26.163426063479445 38.53929800694178 20.301678745678416 14.995597183900363 38 23.333449682324687 39.53975744356861 23.200414542942852 13.92637833116385 39 23.765388218274115 41.51116340194235 20.015715627173563 14.707732752609978 40 25.275314348015726 41.30233115136408 18.76198430083195 14.660370199788245 41 27.376009575805764 41.058055025127125 16.939590184799087 14.626345214268019 42 24.775552863448 41.75980970980575 16.619148035929705 16.845489390816546 43 26.169952958116347 37.55597876318752 19.217334524065937 17.056733754630194 44 25.445269008800242 36.129398240178936 18.524263447034674 19.901069303986144 45 22.231028800348252 37.37402029183165 20.47265500736262 19.922295900457478 46 24.903763776359078 36.15141941512781 17.262756602734314 21.6820602057788 47 24.831230112481098 33.791095669802694 18.83156667322194 22.54610754449427 48 25.482784464061076 34.08931799910383 18.11267179567074 22.315225741164358 49 26.08550061707532 35.90637708821609 18.048878495045663 19.95924379966293 50 23.50817181397442 38.81266138101712 17.46219580059599 20.216971004412464 51 22.454021574508335 37.603908872064636 18.7996700229094 21.14239953051763 52 24.496826084649285 34.16593806658057 21.203014517232564 20.134221331537585 53 24.52063506117261 34.207085880595855 21.259571478151503 20.01270758008003 54 22.107102935655316 36.07670066043661 20.882657501771483 20.933538902136593 55 21.720114839292247 33.80690210594512 22.876907591374398 21.596075463388235 56 22.288550606561344 33.853157924458856 21.82880182389814 22.02948964508166 57 20.798687583377532 32.64965530901867 23.955860030460734 22.59579707714307 58 21.100230115602656 33.36471918319603 22.5946619650323 22.940388736169012 59 23.68119127745801 30.954592394011033 21.863820032515285 23.500396296015673 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 46.5 2 93.0 3 93.0 4 74.0 5 55.0 6 1914.0 7 3773.0 8 7052.5 9 13402.0 10 16472.0 11 18243.0 12 20014.0 13 19861.0 14 19758.0 15 19808.0 16 18729.5 17 17651.0 18 19055.5 19 25470.0 20 30480.0 21 36887.0 22 43294.0 23 52545.0 24 61796.0 25 72945.0 26 91554.5 27 99015.0 28 104782.0 29 110549.0 30 115575.5 31 117986.5 32 115371.0 33 114320.5 34 113270.0 35 115094.5 36 114861.5 37 112804.0 38 113177.5 39 113551.0 40 120234.5 41 126918.0 42 134950.0 43 140829.0 44 138676.0 45 147167.5 46 155659.0 47 160474.5 48 157155.0 49 149020.0 50 161059.5 51 173099.0 52 172418.0 53 180913.5 54 190090.0 55 199086.0 56 208082.0 57 200935.0 58 173494.0 59 153200.0 60 132511.0 61 111822.0 62 92349.0 63 72876.0 64 58562.0 65 37931.0 66 31614.0 67 26279.5 68 20945.0 69 16318.5 70 9156.0 71 6620.0 72 4635.0 73 2650.0 74 2194.5 75 1097.0 76 455.0 77 358.0 78 261.0 79 183.5 80 106.0 81 77.5 82 43.0 83 37.0 84 26.0 85 15.0 86 11.0 87 3.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 3523881.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.667204253012297 #Duplication Level Percentage of deduplicated Percentage of total 1 89.60498086474517 27.47934250266399 2 4.442103733176015 2.724538049967547 3 1.517110479255876 1.39576610825176 4 0.8546919954236275 1.0484405598828417 5 0.5352948945642857 0.8207998933598817 6 0.4178457722825874 0.7688496986908663 7 0.29576387619595423 0.634917584137478 8 0.24061751492661082 0.5903253181685288 9 0.1755894566162402 0.48463539576531117 >10 1.4019476847634251 8.222375284930012 >50 0.10698685340013556 2.3318604270138428 >100 0.2870657386297456 24.135725732236445 >500 0.09832869005011154 20.44932128602148 >1k 0.021672445970228667 8.913102158910101 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.10698431643974357 0.0 0.0 0.0 0.0 11 0.11101396443296467 0.0 0.0 0.0 0.0 12 0.1419173916485829 0.0 0.0 0.0 0.0 13 0.19813381893429433 0.0 0.0 0.0 0.0 14 0.3107653181251013 0.0 0.0 0.0 0.0 15 0.4844374710723773 0.0 0.0 0.0 0.0 16 0.5952527908859578 0.0 0.0 0.0 0.0 17 0.6827699346260557 0.0 0.0 0.0 0.0 18 0.8005661939208504 0.0 0.0 0.0 0.0 19 0.909309934132282 0.0 0.0 0.0 0.0 20 1.003978284170209 0.0 0.0 0.0 0.0 21 1.0961210097616805 0.0 0.0 0.0 0.0 22 1.1920096053186813 0.0 0.0 0.0 0.0 23 1.282080751308004 0.0 0.0 0.0 0.0 24 1.3766639679376234 0.0 0.0 0.0 0.0 25 1.4817185937890638 0.0 0.0 0.0 0.0 26 1.6006215873918557 0.0 0.0 0.0 0.0 27 1.7212840047663358 0.0 0.0 0.0 0.0 28 1.8379451519503638 0.0 0.0 0.0 0.0 29 1.9773369191524912 0.0 0.0 0.0 0.0 30 2.1306338097115085 0.0 0.0 0.0 0.0 31 2.2633284154601134 0.0 0.0 0.0 0.0 32 2.376101803664766 0.0 0.0 0.0 0.0 33 2.473182266938072 0.0 0.0 0.0 0.0 34 2.5701775968030702 0.0 0.0 0.0 0.0 35 2.6614689883114666 0.0 0.0 0.0 0.0 36 2.745921329352495 0.0 0.0 0.0 0.0 37 2.8349141188365894 0.0 0.0 0.0 0.0 38 2.9219488399296116 0.0 0.0 0.0 0.0 39 3.0062592919567943 0.0 0.0 0.0 0.0 40 3.0915062114753593 0.0 0.0 0.0 0.0 41 3.174284262153007 0.0 0.0 0.0 0.0 42 3.2579136469137295 0.0 0.0 0.0 0.0 43 3.3434159666572167 0.0 0.0 0.0 0.0 44 3.4282088413314753 0.0 0.0 0.0 0.0 45 3.520408322528485 0.0 0.0 0.0 0.0 46 3.611472691614728 0.0 0.0 0.0 0.0 47 3.694477764714529 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATTA 75 0.0 53.000004 39 CTTAACG 115 0.0 53.0 20 CGACGTA 130 0.0 53.0 17 CTATACG 65 0.0 53.0 32 ATTACGC 40 1.6025297E-9 53.0 15 ATTCGTT 50 3.6379788E-12 53.0 27 CTAAGTT 110 0.0 53.0 29 CGATTAC 35 3.3447577E-8 53.0 53 CGTTAGA 220 0.0 53.0 45 ACGATAA 15 0.0066974093 53.0 19 CCGTACA 125 0.0 53.0 50 TACGCAC 50 3.6379788E-12 53.0 43 ACGGACC 40 1.6025297E-9 53.0 51 TACCTAA 15 0.0066974093 53.0 14 TTAACGA 35 3.3447577E-8 53.0 31 ATGCGCG 15 0.0066974093 53.0 14 TACTAGC 50 3.6379788E-12 53.0 28 TACTAAT 25 1.4793615E-5 53.0 19 TACTAAC 25 1.4793615E-5 53.0 26 CCGAACA 35 3.3447577E-8 53.0 20 >>END_MODULE