##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528100_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 36650846 Sequences flagged as poor quality 0 Sequence length 52 %GC 30 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.25649514338632 31.0 30.0 34.0 16.0 34.0 2 31.024877734063764 31.0 30.0 34.0 27.0 34.0 3 31.60970226990122 31.0 31.0 34.0 30.0 34.0 4 35.37247189328181 37.0 35.0 37.0 33.0 37.0 5 35.305753133229175 37.0 35.0 37.0 33.0 37.0 6 35.76610177020198 37.0 35.0 37.0 35.0 37.0 7 35.765766580122055 37.0 35.0 37.0 35.0 37.0 8 35.68678856689966 37.0 35.0 37.0 33.0 37.0 9 37.64630868275182 39.0 37.0 39.0 35.0 39.0 10 37.11796098785823 39.0 37.0 39.0 33.0 39.0 11 37.781894202387576 39.0 37.0 39.0 35.0 39.0 12 37.68089099498549 39.0 37.0 39.0 35.0 39.0 13 37.41987360946593 39.0 37.0 39.0 35.0 39.0 14 37.8787431537051 40.0 38.0 40.0 33.0 40.0 15 36.895674386342954 39.0 36.0 40.0 31.0 40.0 16 37.03778851380402 39.0 36.0 40.0 31.0 40.0 17 36.989993000434424 39.0 36.0 40.0 32.0 40.0 18 36.733976427174426 39.0 36.0 40.0 31.0 40.0 19 36.96770800324773 39.0 36.0 40.0 32.0 40.0 20 37.015730032534584 39.0 36.0 40.0 32.0 40.0 21 37.10589237148851 39.0 36.0 40.0 32.0 40.0 22 37.08656264032759 39.0 36.0 40.0 32.0 40.0 23 37.229675380480984 39.0 37.0 40.0 32.0 40.0 24 37.5011972984198 39.0 37.0 40.0 32.0 40.0 25 37.59571729940422 40.0 37.0 40.0 32.0 40.0 26 37.30076230709654 40.0 37.0 40.0 32.0 40.0 27 36.9287890380484 39.0 36.0 40.0 31.0 40.0 28 36.492778584156014 38.0 36.0 40.0 30.0 40.0 29 36.269333128081136 38.0 35.0 40.0 30.0 40.0 30 36.04642176608966 38.0 35.0 40.0 30.0 40.0 31 35.992593758954435 38.0 35.0 40.0 30.0 40.0 32 35.98174350463834 38.0 35.0 40.0 30.0 40.0 33 35.8903598296203 38.0 35.0 40.0 30.0 40.0 34 35.767600917042955 38.0 35.0 40.0 30.0 40.0 35 35.54187521346711 38.0 35.0 40.0 30.0 40.0 36 35.40253229079624 38.0 35.0 40.0 29.0 40.0 37 35.369458429417975 37.0 35.0 40.0 29.0 40.0 38 35.29413495666648 37.0 35.0 40.0 29.0 40.0 39 35.08076165554269 37.0 35.0 40.0 27.0 40.0 40 34.80744518148367 36.0 34.0 40.0 26.0 40.0 41 34.42089391333559 35.0 33.0 40.0 25.0 40.0 42 34.07043570017456 35.0 33.0 39.0 24.0 40.0 43 33.6906989541251 35.0 33.0 39.0 23.0 40.0 44 33.2502141969656 35.0 33.0 39.0 21.0 40.0 45 32.97294654535396 35.0 33.0 39.0 20.0 40.0 46 32.55276320224641 35.0 33.0 38.0 20.0 40.0 47 32.117534067290016 35.0 32.0 38.0 18.0 40.0 48 31.62281399998243 35.0 31.0 37.0 15.0 40.0 49 31.051712257883487 35.0 30.0 37.0 12.0 40.0 50 30.641196113181124 35.0 28.0 36.0 10.0 40.0 51 30.15168872227397 35.0 27.0 35.0 10.0 40.0 52 29.15564325582007 34.0 24.0 35.0 9.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 5.0 10 12.0 11 20.0 12 44.0 13 91.0 14 187.0 15 496.0 16 1457.0 17 3983.0 18 9757.0 19 21143.0 20 40791.0 21 70413.0 22 113369.0 23 170616.0 24 243726.0 25 340893.0 26 458419.0 27 586674.0 28 741884.0 29 935315.0 30 1160771.0 31 1397301.0 32 1666931.0 33 2062612.0 34 2679991.0 35 3576827.0 36 6698076.0 37 7138187.0 38 5912095.0 39 618755.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.80354587176514 19.144111980389212 36.97356672203419 9.078775425811452 2 28.297666034775844 20.913487235738025 28.169322476212415 22.619524253273717 3 24.536846980285258 25.582028856850947 26.7811498812333 23.099974281630498 4 18.845701406183093 35.9708722685419 24.8586185432118 20.324807782063203 5 0.0 100.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 0.0 100.0 0.0 0.0 9 0.0 100.0 0.0 0.0 10 0.0 100.0 0.0 0.0 11 97.28757966460037 2.6167936205347075 0.07193558369703117 0.023691131167886275 12 96.96900857349922 2.784857953892797 0.13644432655115246 0.10968914605681954 13 93.6873544474253 5.4257601584421815 0.5140890881481972 0.3727963059843148 14 29.581772819104913 59.507387633016705 5.150642361707012 5.760197186171364 15 18.85988934607403 55.841207594498634 16.094277878333287 9.204625181094046 16 42.092758240832964 38.52192115838199 9.884415764918495 9.500904835866544 17 27.076076224816205 35.08158038152789 14.04304555480111 23.799297838854798 18 21.136251534275637 48.29229589952712 20.792649643066902 9.778802923130343 19 30.121250134307946 43.6805387793777 20.277687450925416 5.920523635388935 20 22.325162698836472 39.42331372105299 31.46782205245685 6.783701527653687 21 26.972946272508963 40.094389635644426 16.36720200128532 16.565462090561294 22 20.71278245528084 50.936352192252265 17.957233511062746 10.393631841404153 23 9.316928182230773 54.487473495154795 22.911621194228367 13.283977128386068 24 10.628982479695011 55.81159026997631 14.1058408310684 19.453586419260283 25 18.72784055243909 44.7158709515191 16.987476905717262 19.568811590324543 26 13.027399149258384 50.75861004681856 6.8763051199418435 29.337685683981213 27 14.935799844838508 62.511361947825165 6.057898363382935 16.494939843953397 28 17.6467413603495 57.544093252308556 7.710831558976839 17.09833382836511 29 21.108882452536022 50.674868460062285 7.03591125836495 21.180337829036745 30 24.829279520587328 51.85179354386526 8.69874599893274 14.620180936614668 31 15.936966366342538 57.43464966674985 10.389863851983117 16.238520114924494 32 17.138330176607656 65.63444674646802 10.129588823133851 7.097634253790486 33 19.865268594345682 63.787217899417655 9.630757227268369 6.716756278968294 34 16.314982197136732 66.1803959450213 10.007550712471957 7.497071145370014 35 17.10115504564342 61.84915895256552 13.260275083418266 7.789410918372798 36 12.953542736776116 64.59784311663638 14.675612126388572 7.773002020198934 37 13.558532864425556 66.61930259399742 11.429116806744378 8.393047734832642 38 12.580814642041277 66.6784963162924 11.555741441821016 9.184947599845309 39 12.27488991659292 68.22347838846612 10.4403019782954 9.061329716645558 40 11.607762069121133 70.73370148127005 9.852408318214536 7.806128131394294 41 11.83440622352892 71.57854146122575 9.552535294819661 7.0345170204256675 42 13.131077520011408 69.33194666229532 10.086473856565275 7.450501961127991 43 14.158006066217407 67.09842932411438 11.015096350026955 7.728468259641265 44 14.778463776797949 67.82580407557305 9.592774475110343 7.802957672518665 45 14.845875590429754 67.15963664249387 10.054469138311296 7.940018628765076 46 15.849287626266525 66.09707453956179 10.332779221521927 7.72085861264976 47 17.964635795855845 64.7188498732062 9.78701555756721 7.529498773370744 48 17.368188445090734 65.27836492505521 9.401728407578913 7.951718222275142 49 15.362496680158488 66.39486029872272 9.835464643844784 8.40717837727402 50 13.950802117910186 67.38613346060279 10.260578978176929 8.402485443310095 51 13.930333286167528 66.22401840328597 10.658018644371811 9.18762966617469 52 15.477247100926403 64.71913363200402 9.997010710202979 9.8066085568666 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5898.0 1 24240.0 2 42582.0 3 122213.0 4 201844.0 5 404850.0 6 607856.0 7 731568.5 8 855281.0 9 1333290.5 10 1811300.0 11 1737130.0 12 1662960.0 13 1086987.0 14 388066.5 15 265119.0 16 293735.0 17 322351.0 18 494548.0 19 666745.0 20 1093967.0 21 1521189.0 22 1941935.0 23 2362681.0 24 2413414.5 25 2464148.0 26 2258436.5 27 2052725.0 28 1890907.5 29 1729090.0 30 1695544.5 31 1661999.0 32 1648674.0 33 1635349.0 34 1592959.0 35 1550569.0 36 1572984.5 37 1595400.0 38 1713729.5 39 1933157.0 40 2034255.0 41 2052891.0 42 2071527.0 43 2016062.5 44 1960598.0 45 1879350.0 46 1798102.0 47 1666701.5 48 1535301.0 49 1295032.0 50 1054763.0 51 791111.5 52 527460.0 53 361353.0 54 195246.0 55 129289.5 56 63333.0 57 43667.5 58 24002.0 59 17589.0 60 11176.0 61 9821.0 62 8466.0 63 6115.0 64 2842.5 65 1921.0 66 1548.5 67 1176.0 68 971.0 69 766.0 70 572.5 71 379.0 72 288.0 73 197.0 74 160.5 75 124.0 76 101.0 77 78.0 78 48.5 79 19.0 80 17.0 81 15.0 82 15.5 83 16.0 84 8.5 85 1.0 86 1.5 87 2.0 88 1.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3.6650846E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.96714818988137 #Duplication Level Percentage of deduplicated Percentage of total 1 75.43477434176305 18.833911896610587 2 9.127362899686029 4.557684441985729 3 3.4297817080329076 2.5689560449020616 4 1.9580199755626102 1.9554469955447837 5 1.298496147749447 1.620987287242527 6 0.9681988657974906 1.4503898735784608 7 0.7693258755605256 1.3445511199000915 8 0.6307791602423554 1.2599005415087852 9 0.5455564516700567 1.2258889897312946 >10 5.143650334081203 26.694595873706405 >50 0.4519614272763306 7.598617422446287 >100 0.20528648885782555 9.757196967496467 >500 0.021894467590560764 3.7624393911710485 >1k 0.012874278788249972 5.980456370494122 >5k 0.0011895046107357123 2.034844820177599 >10k+ 8.480727302650042E-4 9.35413196350382 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGCAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 439806 1.199988671475687 No Hit CCAAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 305314 0.8330339768964677 No Hit AAAAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 213864 0.5835172263145031 No Hit GGGAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 202726 0.553127750448107 No Hit GCAAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 151935 0.41454704756337685 No Hit GCCAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 124610 0.33999215188648035 No Hit TCCAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 110314 0.3009862309863188 No Hit TCGAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 107901 0.29440248118692813 No Hit GGAAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 106441 0.29041894421754955 No Hit GAAAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 104158 0.2841898929154323 No Hit TAAAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 87228 0.23799723477051526 No Hit CCGAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 76619 0.20905110894302412 No Hit GTCAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 49529 0.1351373990111988 No Hit CCAAAATAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 49345 0.13463536421505795 No Hit ACAAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 49330 0.13459443746537256 No Hit TCGCAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 44665 0.12186621831321437 No Hit CGCAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 41911 0.11435206707097567 No Hit GGCAAATAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 40708 0.11106974174620689 No Hit TAAAAATAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 38855 0.10601392393507098 No Hit CTCAAATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 37757 0.10301808585809998 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.2089747123436114 0.0 0.0 0.0 0.0 11 0.21869072271892442 0.0 0.0 0.0 0.0 12 0.33213148749690524 0.0 0.0 0.0 0.0 13 0.5147111747434152 0.0 0.0 0.0 0.0 14 1.1309261456065707 0.0 0.0 0.0 0.0 15 1.8264626142599818 0.0 0.0 0.0 0.0 16 2.1474101852928578 0.0 0.0 0.0 0.0 17 2.394078434096719 0.0 0.0 0.0 0.0 18 2.782500573110918 0.0 0.0 0.0 0.0 19 3.001974360973823 0.0 0.0 0.0 0.0 20 3.1738394251526962 0.0 0.0 0.0 0.0 21 3.3378656525418267 0.0 0.0 0.0 0.0 22 3.4798296334005494 0.0 0.0 0.0 0.0 23 3.6278016611130885 0.0 0.0 0.0 0.0 24 3.801314709079294 0.0 0.0 0.0 0.0 25 3.9623641975413064 0.0 0.0 0.0 0.0 26 4.141967145860699 0.0 0.0 0.0 0.0 27 4.5144633223473205 0.0 0.0 0.0 0.0 28 4.85706387241375 0.0 0.0 0.0 0.0 29 5.155458075919994 0.0 0.0 0.0 0.0 30 5.492784532176965 0.0 0.0 0.0 0.0 31 5.9143764375861885 0.0 0.0 0.0 0.0 32 6.3739865650031655 2.728449979026405E-6 0.0 0.0 0.0 33 6.7174574906129045 2.728449979026405E-6 0.0 0.0 0.0 34 7.013838098034626 2.728449979026405E-6 0.0 0.0 0.0 35 7.299408586639446 2.728449979026405E-6 0.0 0.0 0.0 36 7.6182225097887235 2.728449979026405E-6 0.0 0.0 0.0 37 7.956132854341207 2.728449979026405E-6 0.0 0.0 0.0 38 8.302978872575002 2.728449979026405E-6 0.0 0.0 0.0 39 8.682959187354093 2.728449979026405E-6 0.0 0.0 0.0 40 9.092567740455431 2.728449979026405E-6 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGTT 70 0.0 46.000004 37 CGATCTA 25 3.4192366E-5 46.0 44 CGTACTG 180 0.0 44.722218 28 CTAACAT 175 0.0 44.685715 32 GGCAAAT 120540 0.0 43.824787 1 CTACCCG 105 0.0 43.809525 28 ACGTACT 180 0.0 43.444443 27 CCAAAAT 65225 0.0 42.854584 1 CGTCGCT 145 0.0 42.827583 22 CCTATCT 140 0.0 42.714287 31 CGCCCTA 205 0.0 42.634144 21 GCAAATA 177545 0.0 42.59168 2 GCCAAAT 45425 0.0 42.56709 1 CGGTACT 65 0.0 42.46154 27 AGGGAAA 577600 0.0 42.438904 10 CCAAATA 108990 0.0 42.39352 2 CACGACC 60 1.8189894E-12 42.166668 36 CCGAAAT 17990 0.0 42.138966 1 CCCGCCG 115 0.0 42.0 42 CGAACTA 110 0.0 41.81818 24 >>END_MODULE