##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528097_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1831661 Sequences flagged as poor quality 0 Sequence length 52 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.460939005634778 31.0 31.0 33.0 28.0 33.0 2 31.319197711803657 31.0 31.0 34.0 30.0 34.0 3 31.676661784030998 31.0 31.0 34.0 30.0 34.0 4 35.54460787230825 37.0 35.0 37.0 33.0 37.0 5 35.66581152298378 37.0 35.0 37.0 33.0 37.0 6 35.509193568023775 37.0 35.0 37.0 33.0 37.0 7 33.0623172082607 35.0 32.0 35.0 28.0 35.0 8 34.387773720137076 35.0 35.0 36.0 32.0 37.0 9 37.093420671183154 39.0 37.0 39.0 34.0 39.0 10 37.638395969559866 39.0 37.0 39.0 35.0 39.0 11 37.194751102960645 39.0 37.0 39.0 34.0 39.0 12 37.49756641649301 39.0 37.0 39.0 35.0 39.0 13 37.51564727315808 39.0 37.0 39.0 35.0 39.0 14 37.70639545199685 40.0 38.0 40.0 33.0 40.0 15 36.93170351937395 39.0 36.0 40.0 31.0 40.0 16 36.40272681462345 38.0 35.0 40.0 31.0 40.0 17 36.20463284417804 38.0 35.0 40.0 30.0 40.0 18 36.201242478821136 38.0 35.0 40.0 30.0 40.0 19 36.51808276749901 39.0 35.0 40.0 31.0 40.0 20 36.7262310001687 39.0 35.0 40.0 31.0 40.0 21 36.842495964045746 39.0 35.0 40.0 31.0 40.0 22 36.79014730345845 39.0 35.0 40.0 31.0 40.0 23 36.831962901432085 39.0 35.0 40.0 31.0 40.0 24 36.84777314142737 39.0 35.0 40.0 31.0 40.0 25 36.840295775255356 39.0 35.0 40.0 31.0 40.0 26 36.48003205833394 39.0 35.0 40.0 31.0 40.0 27 36.164392319321095 39.0 35.0 40.0 30.0 40.0 28 35.87171752851647 38.0 35.0 40.0 30.0 40.0 29 35.60961771856255 37.0 35.0 40.0 30.0 40.0 30 35.29088242857166 37.0 34.0 40.0 29.0 40.0 31 35.21001812016525 37.0 34.0 40.0 29.0 40.0 32 35.186865910231205 37.0 34.0 40.0 28.0 40.0 33 35.02116439668694 36.0 34.0 40.0 27.0 40.0 34 34.772867359189284 36.0 33.0 40.0 25.0 40.0 35 34.43035092192278 35.0 33.0 40.0 24.0 40.0 36 34.20145485436443 35.0 33.0 40.0 24.0 40.0 37 33.954323425568376 35.0 33.0 40.0 23.0 40.0 38 33.51578976677453 35.0 33.0 40.0 21.0 40.0 39 33.00733869422344 35.0 33.0 40.0 18.0 40.0 40 32.37527140666313 35.0 32.0 39.0 15.0 40.0 41 31.629314594785825 35.0 31.0 39.0 12.0 40.0 42 30.832063356701923 35.0 28.0 39.0 9.0 40.0 43 30.010635155741156 35.0 24.0 38.0 8.0 40.0 44 29.319193890135782 35.0 22.0 38.0 8.0 40.0 45 28.882400728082324 35.0 20.0 38.0 8.0 40.0 46 28.423733976974997 35.0 19.0 38.0 8.0 40.0 47 27.99489861934059 34.0 17.0 38.0 8.0 40.0 48 27.593708661155095 34.0 15.0 37.0 8.0 40.0 49 27.16040304401306 33.0 12.0 37.0 8.0 40.0 50 26.79039025234473 33.0 10.0 36.0 8.0 40.0 51 26.427472660061003 33.0 10.0 36.0 8.0 40.0 52 25.4524936655855 33.0 10.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 3.0 14 7.0 15 42.0 16 149.0 17 523.0 18 1262.0 19 2728.0 20 5019.0 21 8202.0 22 12517.0 23 18033.0 24 25175.0 25 34279.0 26 45297.0 27 58932.0 28 75814.0 29 94970.0 30 111380.0 31 110007.0 32 95036.0 33 93954.0 34 116424.0 35 150436.0 36 198455.0 37 254945.0 38 278920.0 39 39151.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.94678382080527 22.527694808155 36.76258871046553 6.7629326605742 2 27.075697959393143 19.757531551962945 34.20463721179847 18.962133276845442 3 19.88866935530101 21.961869581762127 36.40215083467956 21.7473102282573 4 24.462168490785142 24.618747683113853 39.83215234696814 11.086931479132875 5 0.0 0.0 0.0 100.0 6 100.0 0.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 0.0 100.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 100.0 0.0 11 99.36107172670052 0.35852704184890105 0.22023726006067715 0.06016397138990239 12 99.01237183081368 0.679437952765277 0.16323981348076966 0.14495040294028208 13 96.85258352937579 1.798586092077082 0.6724497600811504 0.6763806184659716 14 52.45266454873473 27.914990819807812 10.73413693909517 8.898207692362288 15 31.620916752608696 40.0276033611023 17.86007345245654 10.491406433832463 16 36.193269387730595 34.74250966745484 17.106058380890353 11.958162563924219 17 23.350117734668153 38.615824653142695 17.979145704363418 20.05491190782574 18 17.331427594953432 48.58082363494118 20.03465706809284 14.053091702012546 19 19.51403671312541 45.29806552631737 24.582824005097013 10.605073755460207 20 15.263577703516098 45.99328150787728 24.181166711525766 14.561974077080858 21 21.73322465237836 47.82184039513862 13.798350240573992 16.646584711909025 22 20.404048565755346 48.20089525299714 16.178048230540476 15.217007950707037 23 18.199601345445473 48.10622708022937 20.46437632291128 13.229795251413881 24 18.304806402494787 50.552531281716426 15.444287998707185 15.698374317081601 25 19.28926804687112 48.385973168615806 18.78387976814487 13.540879016368205 26 16.20043228523182 47.473795642315906 19.674219192306875 16.6515528801454 27 18.451667639372133 52.3446205384075 16.023216086382796 13.18049573583758 28 16.364491027542762 50.80001157419414 15.410056773606032 17.425440624657075 29 18.084514547178763 51.58121508292201 14.633220885305743 15.70104948459349 30 21.35569846166949 50.767472802008676 15.322158412501002 12.554670323820838 31 17.590318295798184 53.61991110800525 12.724461567942976 16.06530902825359 32 17.355394912049775 58.61854349685886 12.693724439183887 11.332337151907476 33 19.182315941650774 54.67507360805301 12.611886151422125 13.530724298874084 34 17.581910626475093 56.7118587991992 13.867740810117157 11.838489764208552 35 17.540745803945164 56.40295884445866 15.195824991633277 10.860470359962896 36 16.378522008166357 54.859387190096854 18.335161364466458 10.426929437270324 37 16.58117959600603 55.728543655185106 16.123452975195736 11.56682377361313 38 14.376404804164089 57.54465482422785 18.06677108919172 10.012169282416343 39 16.054499167695333 56.12206625570998 17.577379220281482 10.246055356313203 40 18.493378414455513 54.231104991589596 14.492965674325106 12.782550919629779 41 19.66804992845292 53.26111108987962 14.220699135920894 12.850139845746567 42 22.003088999547405 50.25880880796173 13.636093141689429 14.102009050801431 43 18.80025834474829 50.0417926679664 16.895593671536382 14.262355315748929 44 19.672635929901876 50.04523216905311 16.992664035539327 13.28946786550568 45 20.885742503661977 45.032896371107974 20.242719586211642 13.83864153901841 46 24.927866018875765 44.4966071778566 17.003801467629653 13.57172533563798 47 25.37876823276796 44.05744294386352 15.24861860355164 15.315170219816876 48 25.70175376338744 44.519155018313974 15.81657304490296 13.962518173395623 49 24.565844880684796 44.350947036596835 15.604688858910027 15.478519223808334 50 23.173229107351194 46.88394850357135 14.237732855588453 15.705089533489003 51 21.989385590455875 46.72518550102885 16.73683066899388 14.548598239521397 52 25.616748950815683 43.82688718054269 15.129491756389418 15.426872112252212 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 3.0 4 6.0 5 14.0 6 22.0 7 294.0 8 566.0 9 3286.0 10 6006.0 11 9385.0 12 12764.0 13 17698.5 14 23271.0 15 23909.0 16 24775.0 17 25641.0 18 27456.0 19 29271.0 20 36075.0 21 42879.0 22 52302.0 23 61725.0 24 76523.0 25 91321.0 26 101463.0 27 111605.0 28 113285.0 29 114965.0 30 108206.5 31 101448.0 32 93929.0 33 86410.0 34 82069.5 35 77729.0 36 71552.5 37 65376.0 38 63218.0 39 60705.0 40 60350.0 41 66616.5 42 72883.0 43 79513.0 44 86143.0 45 94609.0 46 103075.0 47 108714.0 48 114353.0 49 109731.0 50 105109.0 51 95333.0 52 85557.0 53 80220.0 54 74883.0 55 65740.5 56 56598.0 57 47050.5 58 37503.0 59 33133.5 60 28764.0 61 27076.0 62 25388.0 63 22736.5 64 15769.5 65 11454.0 66 8905.0 67 6356.0 68 5054.0 69 3752.0 70 2062.5 71 373.0 72 1659.0 73 2945.0 74 1649.5 75 354.0 76 236.5 77 119.0 78 86.0 79 53.0 80 79.0 81 105.0 82 89.0 83 73.0 84 50.5 85 28.0 86 22.5 87 17.0 88 10.0 89 2.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1831661.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.44356216097747 #Duplication Level Percentage of deduplicated Percentage of total 1 88.08755966907783 37.38749814423317 2 5.366956429703241 4.555854976787345 3 1.7099352968594113 2.1772723519050565 4 0.8359861634314627 1.4192892277328142 5 0.5106849677018054 1.0837644585664175 6 0.3713896766449219 0.9457860495974438 7 0.3005808191326708 0.893040447687853 8 0.21934395185710118 0.7447790924225058 9 0.1939081796196383 0.7407138487687293 >10 2.0249406861591455 18.505470081064622 >50 0.20514707312871303 5.928317865612236 >100 0.136430679273905 11.94852283187905 >500 0.02712801392365343 7.988490603833685 >1k 0.010008393486396412 5.681200019909093 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCGCGTATTGGGGGGACTGGAGAGATGGCTCAGCGGTTAAGATCACTGACT 3193 0.17432265031575167 No Hit GGTTCGTATTGGGGAGGATAACTGATGCATCACCATCATCACCATGCTCCTG 2935 0.160237074436809 No Hit CCGCCGTATTGGGGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTC 2693 0.14702502264338216 No Hit TTCTCGTATTGGGGAAAAACATGGCCGATCTCCAGCTCAGATCTTGCTTAGA 2286 0.12480475371807337 No Hit CCAGCGTATTGGGAACCAGTGGTATCAACGCAGAATAAGTCGTATTGGGATC 2058 0.11235703549947289 No Hit TATGCGTATTGGGTTCCATTATTACAGGTTTCCATTATTATAAGAAATTACT 1889 0.103130437346212 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.011683384643774148 0.0 0.0 0.0 0.0 12 0.06824406918092377 0.0 0.0 0.0 0.0 13 0.08915405197795881 0.0 0.0 0.0 0.0 14 0.4398739723125622 0.0 0.0 0.0 0.0 15 0.8848798986275299 0.0 0.0 0.0 0.0 16 1.1915960431542736 0.0 0.0 0.0 0.0 17 1.3888487007148156 0.0 0.0 0.0 0.0 18 1.583753762295534 0.0 0.0 0.0 0.0 19 1.7878308267741683 0.0 0.0 0.0 0.0 20 1.9946376540200397 0.0 0.0 0.0 0.0 21 2.2095791743122772 0.0 0.0 0.0 0.0 22 2.410052951938159 0.0 0.0 0.0 0.0 23 2.6047396324974983 0.0 0.0 0.0 0.0 24 2.8233390348978333 0.0 0.0 0.0 0.0 25 3.0630122058612375 0.0 0.0 0.0 0.0 26 3.330638147561148 0.0 0.0 0.0 0.0 27 3.623705478251707 0.0 0.0 0.0 0.0 28 3.9164998326655422 0.0 0.0 0.0 0.0 29 4.243580007435874 0.0 0.0 0.0 0.0 30 4.610023361309762 0.0 0.0 0.0 0.0 31 4.920506578455293 0.0 0.0 0.0 0.0 32 5.164001417292829 0.0 0.0 0.0 0.0 33 5.368406053303532 0.0 0.0 0.0 0.0 34 5.56746035429045 0.0 0.0 0.0 0.0 35 5.750136078673947 0.0 0.0 0.0 0.0 36 5.919654346519361 0.0 0.0 0.0 0.0 37 6.076015157826694 0.0 0.0 0.0 0.0 38 6.232867326432129 0.0 0.0 0.0 0.0 39 6.391248162187217 0.0 0.0 0.0 0.0 40 6.542859186279557 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAG 160 0.0 46.000004 26 TCTGCAC 40 5.6152203E-9 46.000004 46 CTTGTAC 80 0.0 46.000004 34 CTATGTG 140 0.0 46.000004 31 CTATGGA 145 0.0 46.000004 42 CTATGCG 20 6.312439E-4 46.000004 37 GATACTA 40 5.6152203E-9 46.000004 13 ACTATGA 20 6.312439E-4 46.000004 34 CCTTAGC 35 1.0200165E-7 46.000004 19 GATACGC 20 6.312439E-4 46.000004 20 TCTGACA 145 0.0 46.000004 15 ACAGTCT 40 5.6152203E-9 46.000004 41 TGCCCCT 35 1.0200165E-7 46.000004 43 ACCGGCA 70 0.0 46.000004 32 ATTAGTG 160 0.0 46.000004 15 CTCAATA 20 6.312439E-4 46.000004 31 ATTAGAG 35 1.0200165E-7 46.000004 35 CAAGTAT 35 1.0200165E-7 46.000004 30 AGATAGT 70 0.0 46.000004 33 CCTAGTC 70 0.0 46.000004 19 >>END_MODULE