##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528094_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8704197 Sequences flagged as poor quality 0 Sequence length 52 %GC 56 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32273993798624 31.0 31.0 34.0 30.0 34.0 2 31.846280937805062 31.0 31.0 34.0 30.0 34.0 3 32.001621286834386 33.0 31.0 34.0 30.0 34.0 4 35.56894495839191 37.0 35.0 37.0 33.0 37.0 5 35.658705909344654 37.0 35.0 37.0 33.0 37.0 6 35.529786952202485 37.0 35.0 37.0 33.0 37.0 7 35.849212282304734 37.0 35.0 37.0 35.0 37.0 8 35.66627053592652 37.0 35.0 37.0 33.0 37.0 9 37.30842534928839 39.0 37.0 39.0 34.0 39.0 10 37.18973467627169 39.0 37.0 39.0 33.0 39.0 11 37.40072748813015 39.0 37.0 39.0 35.0 39.0 12 37.389014747713084 39.0 37.0 39.0 35.0 39.0 13 37.26161563209105 39.0 37.0 39.0 35.0 39.0 14 37.62934742860255 40.0 38.0 40.0 32.0 40.0 15 35.89525547273344 38.0 35.0 40.0 31.0 40.0 16 35.762320981475945 38.0 35.0 40.0 27.0 40.0 17 35.71556342302455 38.0 34.0 40.0 27.0 40.0 18 36.06693667434227 38.0 35.0 40.0 30.0 40.0 19 36.3284289176819 38.0 35.0 40.0 30.0 40.0 20 36.43629929331792 38.0 35.0 40.0 31.0 40.0 21 36.40130904665875 38.0 35.0 40.0 31.0 40.0 22 36.463080856281174 38.0 35.0 40.0 31.0 40.0 23 36.495283711984 38.0 35.0 40.0 31.0 40.0 24 36.53161790800461 39.0 35.0 40.0 31.0 40.0 25 36.52973157661758 39.0 35.0 40.0 31.0 40.0 26 36.21679173851419 38.0 35.0 40.0 30.0 40.0 27 35.97162288491403 38.0 35.0 40.0 30.0 40.0 28 35.89305101895097 38.0 35.0 40.0 30.0 40.0 29 35.9169699399037 38.0 35.0 40.0 30.0 40.0 30 35.74182856844807 38.0 35.0 40.0 30.0 40.0 31 35.77148012619659 38.0 35.0 40.0 30.0 40.0 32 35.819420217626046 38.0 35.0 40.0 30.0 40.0 33 35.809573818239635 38.0 35.0 40.0 30.0 40.0 34 35.70824545905843 38.0 35.0 40.0 30.0 40.0 35 35.46057585783042 38.0 34.0 40.0 29.0 40.0 36 35.36850521650647 37.0 34.0 40.0 29.0 40.0 37 35.206304154191365 37.0 34.0 40.0 28.0 40.0 38 34.9951516492561 37.0 34.0 40.0 27.0 40.0 39 34.72676365206348 36.0 34.0 40.0 27.0 40.0 40 34.43599254474594 36.0 33.0 40.0 26.0 40.0 41 34.204720550327615 35.0 33.0 40.0 25.0 40.0 42 34.00585384269221 35.0 33.0 39.0 24.0 40.0 43 33.80643992777277 35.0 33.0 39.0 23.0 40.0 44 33.483975374178684 35.0 33.0 39.0 23.0 40.0 45 33.327119319565035 35.0 33.0 39.0 23.0 40.0 46 33.17739373316114 35.0 33.0 38.0 23.0 40.0 47 32.991794762917245 35.0 33.0 38.0 23.0 40.0 48 32.806559869911034 35.0 33.0 38.0 22.0 40.0 49 32.52727448608987 35.0 32.0 38.0 20.0 40.0 50 32.3650577991284 35.0 32.0 37.0 20.0 40.0 51 32.18766624882226 35.0 32.0 37.0 20.0 40.0 52 31.04093519482613 34.0 30.0 36.0 17.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 3.0 12 9.0 13 23.0 14 62.0 15 125.0 16 477.0 17 1251.0 18 2988.0 19 6088.0 20 11612.0 21 19575.0 22 30662.0 23 45828.0 24 64522.0 25 87925.0 26 116420.0 27 150955.0 28 193330.0 29 239607.0 30 283883.0 31 321641.0 32 376527.0 33 488230.0 34 798774.0 35 1058745.0 36 865634.0 37 1400839.0 38 1804134.0 39 334324.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.017483634619023 21.27614988493482 34.62984580886669 17.07652067157947 2 25.678256133219413 21.20346081321459 34.34612061284918 18.772162440716816 3 27.56204851521628 20.652209503070758 34.26063311756386 17.5251088641491 4 27.716709536790123 20.43413079919951 38.23350965057431 13.615650013436047 5 100.0 0.0 0.0 0.0 6 0.0 0.0 0.0 100.0 7 0.0 0.0 0.0 100.0 8 0.0 0.0 100.0 0.0 9 0.0 100.0 0.0 0.0 10 100.0 0.0 0.0 0.0 11 98.86073350591674 0.9678204663796097 0.1283978292311169 0.043048198472529976 12 98.9639136154662 0.6364056328228784 0.26384972674676366 0.13583102496416385 13 95.38362929975045 2.4593538036880367 1.2053610459414004 0.9516558506201089 14 56.711549612215805 26.60383261086577 7.432460455571031 9.252157321347392 15 33.179683318288866 33.09975635891513 15.34702167241849 18.37353865037751 16 30.80742542936471 22.09819010300433 25.317315313520595 21.777069154110368 17 21.538839251914908 22.402434136084008 28.805689944747343 27.25303666725374 18 20.017033162277922 24.864843936781302 29.91979616270174 25.198326738239036 19 26.110622266476735 23.36734795869165 26.153348781053552 24.368680993778057 20 26.44830993599984 23.181070005653595 25.722970194723306 24.64764986362326 21 29.154579107067548 23.595203555250414 22.364486925100614 24.885730412581424 22 30.364076088810947 24.079785878008046 20.90272083685606 24.653417196324945 23 26.46178619348804 23.769533249304907 22.106978966583593 27.661701590623466 24 26.74584456211182 26.338408930772133 20.418827836732095 26.496918670383955 25 27.86492539173918 22.93542988514621 24.120984394080235 25.078660329034374 26 28.690573064924884 25.045848571671804 20.083345999636727 26.18023236376658 27 30.202085269899108 26.508200584154977 19.96344981622084 23.326264329725074 28 28.8095156853642 26.656634724604693 19.44706674263002 25.086782847401086 29 29.213412793851056 25.484590939290552 18.703735680614766 26.598260586243626 30 29.357825885604385 24.74661361639678 20.584816726919207 25.31074377107963 31 27.207851568616842 25.748199403115528 20.57912981519145 26.464819213076176 32 27.523147741256317 28.28548113053967 19.25469977299457 24.936671355209448 33 27.98864731577192 27.358778759258325 19.86538218287109 24.78719174209867 34 26.28268868455068 28.779196978193394 20.142857520343345 24.795256816912577 35 29.129269477701392 28.141205903313082 18.13895066942993 24.5905739495556 36 28.448976970535018 27.844372088545335 20.481889369002104 23.224761571917547 37 29.135151697508682 28.291259951951915 19.710732650007806 22.862855700531597 38 27.648087468608534 28.748142993546676 21.540711911736373 22.063057626108417 39 28.83375686464817 28.629901184451594 21.664973805165484 20.871368145734753 40 29.435880185156655 27.69297386077084 20.5360586392978 22.3350873147747 41 28.95454916748782 28.901528768248237 18.46688442368664 23.677037640577296 42 29.681302020163375 26.49690718167339 19.67795535877692 24.14383543938631 43 28.81107815000051 26.727933662347027 18.610883921859763 25.850104265792694 44 28.380446812037917 27.267983479693765 21.336063510511078 23.015506197757244 45 26.78594016197014 28.79518926329448 20.03489810720047 24.383972467534914 46 28.237331944578 26.870462605568324 19.920907121013002 24.971298328840675 47 28.91885374377441 25.399149398847477 21.882868689667752 23.79912816771036 48 27.604315481370655 24.834582673163304 22.62403987409752 24.937061971368525 49 28.295820970044684 26.22184447341897 21.511978646623003 23.970355909913344 50 28.297176637890892 27.14473259279403 20.86245290633932 23.695637862975758 51 26.399333562877768 28.24047985127175 21.535725811352847 23.824460774497634 52 28.477342596910432 26.647570131971964 20.673210865976493 24.201876405141107 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 1.5 8 3.0 9 62.5 10 122.0 11 1313.0 12 2504.0 13 5066.0 14 13234.0 15 18840.0 16 20965.5 17 23091.0 18 24500.0 19 25909.0 20 24404.5 21 22900.0 22 25259.0 23 27618.0 24 32528.5 25 37439.0 26 45308.0 27 53177.0 28 63891.5 29 74606.0 30 85495.0 31 96384.0 32 113008.0 33 129632.0 34 148517.0 35 167402.0 36 172163.0 37 176924.0 38 169828.0 39 157857.0 40 152982.0 41 172696.5 42 192411.0 43 203175.0 44 213939.0 45 207390.0 46 200841.0 47 215066.5 48 229292.0 49 276221.5 50 323151.0 51 343501.5 52 363852.0 53 403918.5 54 443985.0 55 487225.0 56 530465.0 57 572973.5 58 615482.0 59 645669.0 60 675856.0 61 695215.0 62 714574.0 63 730572.5 64 700109.5 65 653648.0 66 578565.5 67 503483.0 68 434123.0 69 364763.0 70 316918.0 71 269073.0 72 250380.0 73 231687.0 74 186139.5 75 140592.0 76 104070.5 77 67549.0 78 44513.5 79 21478.0 80 15522.0 81 9566.0 82 10199.0 83 10832.0 84 5964.5 85 1097.0 86 583.5 87 70.0 88 50.5 89 22.0 90 13.0 91 7.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 8704197.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 11.876406518481533 #Duplication Level Percentage of deduplicated Percentage of total 1 82.5293631003122 9.801522658906771 2 7.0203018702426405 1.6675191778691558 3 2.6350183675348555 0.9388364794952857 4 1.4937414786695362 0.709611241367885 5 0.941524264688246 0.5590962457226009 6 0.6996287934091283 0.49854455775369244 7 0.5224505123331107 0.434338426917988 8 0.39346686538955356 0.3738377955935191 9 0.300469847816075 0.3211651853288988 >10 2.2509434307575753 5.431534274902069 >50 0.26022554353918775 2.129408579070731 >100 0.41921459109047654 13.493275169785809 >500 0.33137053458573046 28.713599147656403 >1k 0.2021802624550675 34.858051910580194 >5k 1.0053717675537918E-4 0.06965914904896917 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.14239107869456538 0.0 0.0 0.0 0.0 10 0.14239107869456538 0.0 0.0 0.0 0.0 11 0.14565387249392447 0.0 0.0 0.0 0.0 12 0.1610257672247078 0.0 0.0 0.0 0.0 13 0.20168431390052408 0.0 0.0 0.0 0.0 14 0.3821145132629696 0.0 0.0 0.0 0.0 15 0.5128560394485557 0.0 0.0 0.0 0.0 16 0.6026518011942974 0.0 0.0 0.0 0.0 17 0.6800282668234646 0.0 0.0 0.0 0.0 18 0.7858967346442182 0.0 0.0 0.0 0.0 19 0.8405715082046052 0.0 0.0 0.0 0.0 20 0.888157747348779 0.0 0.0 0.0 0.0 21 0.9364447978371813 0.0 0.0 0.0 0.0 22 0.9919008037157248 0.0 0.0 0.0 0.0 23 1.041842228524929 0.0 0.0 0.0 0.0 24 1.099975103964214 0.0 0.0 0.0 0.0 25 1.1622324264949426 0.0 0.0 0.0 1.1488710561123559E-5 26 1.245020074798399 0.0 0.0 0.0 1.1488710561123559E-5 27 1.3097934249420136 0.0 0.0 0.0 1.1488710561123559E-5 28 1.375187165455929 0.0 0.0 0.0 1.1488710561123559E-5 29 1.4383176299893028 0.0 0.0 0.0 1.1488710561123559E-5 30 1.5129253163732392 0.0 0.0 0.0 1.1488710561123559E-5 31 1.585694809067396 0.0 0.0 0.0 1.1488710561123559E-5 32 1.6764326450791498 0.0 0.0 1.1488710561123559E-5 1.1488710561123559E-5 33 1.7292002926863903 0.0 0.0 1.1488710561123559E-5 1.1488710561123559E-5 34 1.788861166630305 0.0 0.0 1.1488710561123559E-5 1.1488710561123559E-5 35 1.8349194072698491 0.0 0.0 1.1488710561123559E-5 1.1488710561123559E-5 36 1.8857914176345043 0.0 0.0 1.1488710561123559E-5 1.1488710561123559E-5 37 1.9345035504136683 0.0 0.0 1.1488710561123559E-5 1.1488710561123559E-5 38 1.980780076553874 0.0 0.0 1.1488710561123559E-5 1.1488710561123559E-5 39 2.03360516771392 0.0 0.0 1.1488710561123559E-5 1.1488710561123559E-5 40 2.089784962357814 0.0 0.0 1.1488710561123559E-5 1.1488710561123559E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTG 20 6.313751E-4 46.000004 38 CGAATTA 20 6.313751E-4 46.000004 24 CGTAACG 80 0.0 46.000004 35 TCGAATT 20 6.313751E-4 46.000004 23 GATACGT 50 1.6370905E-11 46.0 32 ACCGGTA 230 0.0 46.0 31 ATATGCG 155 0.0 46.0 16 TAGATTC 65 0.0 46.0 31 CACGTCA 135 0.0 46.0 16 TGTAACG 75 0.0 46.0 37 TAATCGT 135 0.0 46.0 43 CGATTAC 45 3.110472E-10 45.999996 39 ACTACGT 95 0.0 45.999996 30 CAATACG 85 0.0 45.999996 38 TACGTCG 70 0.0 45.999996 23 CCGATAG 230 0.0 45.0 25 ACGCGTT 210 0.0 44.904762 46 TACTCGA 185 0.0 44.756756 16 TAACGCC 1825 0.0 44.739727 1 ATCGTTT 345 0.0 44.666668 33 >>END_MODULE