##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528090_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9288575 Sequences flagged as poor quality 0 Sequence length 59 %GC 56 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.836476208675712 31.0 31.0 33.0 28.0 34.0 2 31.423081904382535 31.0 31.0 34.0 30.0 34.0 3 31.690994474394618 31.0 31.0 34.0 30.0 34.0 4 35.44428397251462 37.0 35.0 37.0 33.0 37.0 5 35.30646595414259 37.0 35.0 37.0 33.0 37.0 6 34.984043515824546 37.0 35.0 37.0 31.0 37.0 7 34.511788622043746 35.0 35.0 37.0 30.0 37.0 8 35.18328258102023 37.0 35.0 37.0 32.0 37.0 9 36.67399272762507 38.0 35.0 39.0 32.0 39.0 10 37.00206500997193 39.0 37.0 39.0 33.0 39.0 11 36.88417276062259 39.0 37.0 39.0 33.0 39.0 12 36.8676764735172 39.0 37.0 39.0 33.0 39.0 13 36.90788683947753 39.0 37.0 39.0 33.0 39.0 14 37.30420295901148 39.0 37.0 40.0 32.0 40.0 15 36.46109893067559 38.0 36.0 40.0 30.0 40.0 16 35.886136355684265 38.0 35.0 40.0 30.0 40.0 17 36.00531545473875 38.0 35.0 40.0 30.0 40.0 18 36.24778138734951 38.0 35.0 40.0 30.0 40.0 19 36.48579970555225 39.0 35.0 40.0 30.0 40.0 20 36.51815967465408 39.0 35.0 40.0 30.0 40.0 21 36.3771492397919 39.0 35.0 40.0 30.0 40.0 22 36.37519791787223 39.0 35.0 40.0 30.0 40.0 23 36.359998062135475 39.0 35.0 40.0 30.0 40.0 24 36.32721510027103 38.0 35.0 40.0 30.0 40.0 25 36.33116080776653 38.0 35.0 40.0 30.0 40.0 26 35.99634874025348 38.0 35.0 40.0 30.0 40.0 27 35.78913041020824 38.0 35.0 40.0 29.0 40.0 28 35.719873823487454 38.0 34.0 40.0 28.0 40.0 29 35.70508016568742 38.0 34.0 40.0 28.0 40.0 30 35.600461642394016 38.0 34.0 40.0 28.0 40.0 31 35.60577515926824 38.0 34.0 40.0 28.0 40.0 32 35.546644883633924 38.0 34.0 40.0 28.0 40.0 33 35.3103650452303 38.0 34.0 40.0 27.0 40.0 34 35.18537504407296 38.0 34.0 40.0 27.0 40.0 35 35.06963339371217 38.0 33.0 40.0 26.0 40.0 36 34.8987728472882 38.0 33.0 40.0 26.0 40.0 37 34.836250770435726 37.0 33.0 40.0 26.0 40.0 38 34.711652756208565 37.0 33.0 40.0 26.0 40.0 39 34.48952772626587 37.0 33.0 40.0 25.0 40.0 40 34.40274315489728 37.0 33.0 40.0 25.0 40.0 41 34.168843660087795 36.0 33.0 39.0 24.0 40.0 42 34.12069924611687 36.0 33.0 39.0 24.0 40.0 43 33.947165415577736 36.0 33.0 39.0 24.0 40.0 44 33.721772715405756 36.0 32.0 39.0 23.0 40.0 45 33.595352462568265 35.0 32.0 39.0 23.0 40.0 46 33.44095827400866 35.0 32.0 39.0 23.0 40.0 47 33.122543231873564 35.0 32.0 39.0 23.0 40.0 48 32.924314655369635 35.0 31.0 38.0 23.0 40.0 49 32.69623596730392 35.0 31.0 38.0 22.0 40.0 50 32.361001014687396 35.0 31.0 38.0 20.0 40.0 51 32.18207884417147 35.0 31.0 37.0 20.0 40.0 52 31.54640824884334 34.0 30.0 37.0 18.0 39.0 53 31.51149255940766 34.0 30.0 37.0 19.0 39.0 54 31.533644504135456 34.0 30.0 36.0 20.0 39.0 55 31.47761351983485 34.0 30.0 36.0 20.0 39.0 56 31.29873914997726 34.0 30.0 36.0 20.0 39.0 57 31.04472408308056 34.0 29.0 36.0 18.0 39.0 58 30.8927198197786 34.0 29.0 35.0 18.0 38.0 59 30.107087470360092 33.0 28.0 35.0 16.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 11.0 13 22.0 14 97.0 15 357.0 16 1053.0 17 2918.0 18 6476.0 19 12494.0 20 21304.0 21 33404.0 22 48876.0 23 68822.0 24 93090.0 25 122124.0 26 155541.0 27 196704.0 28 240045.0 29 286333.0 30 340414.0 31 412045.0 32 498506.0 33 621098.0 34 825495.0 35 1015613.0 36 1276919.0 37 1557024.0 38 1343371.0 39 108418.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.25389255079493 22.49402088049028 32.62656543118831 16.625521137526476 2 27.08090315252878 21.916838697001424 32.72971365360134 18.272544496868466 3 20.367074605092817 22.285958825761757 35.632763906196594 21.714202662948836 4 22.703417908559707 21.77342595608045 35.03220892332785 20.490947212031983 5 100.0 0.0 0.0 0.0 6 100.0 0.0 0.0 0.0 7 0.0 100.0 0.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 100.0 0.0 0.0 10 0.0 0.0 100.0 0.0 11 99.4571503163833 0.4363209641952614 0.07067822566970713 0.03585049375173264 12 99.55140589379964 0.3379743394438867 0.06535986413416482 0.045259902622307516 13 98.40065887393922 0.9351918889603625 0.209235539358836 0.4549136977415804 14 65.45691884923144 23.3843512056478 4.542096069633932 6.616633875486821 15 34.238696463128086 26.41556966488401 17.350034854646704 21.995699017341195 16 27.67823912709969 19.480932220496687 26.97453592181793 25.866292730585695 17 22.786552296773184 18.688528649442997 30.391270996896726 28.13364805688709 18 23.489017421940396 19.07406679711366 30.600764918192514 26.83615086275344 19 24.315032176625586 18.797404338125062 28.891083939140287 27.996479546109065 20 27.845713685899078 19.093886844860485 24.50981985934333 28.550579609897103 21 29.478730591075596 20.950361061842102 21.311557477869318 28.259350869212984 22 30.23432550202803 21.75644810964007 21.537673970442185 26.471552417889722 23 28.461287118853 21.2206285678912 21.64448260362865 28.67360170962715 24 28.859905852081724 23.358093141305314 21.033409322743264 26.748591683869698 25 31.886559563765164 19.828972689567557 22.79189219013681 25.49257555653047 26 30.166220329813775 20.643704766339294 22.007229311277566 27.182845592569365 27 29.75205561671193 22.452216836274673 20.953676963366284 26.842050583647115 28 29.01886457287582 22.09038523131912 20.591640806043984 28.299109389761078 29 28.804439862949916 21.642157166196107 21.658790503387227 27.894612467466757 30 29.042129713115305 21.384442715917135 21.29686200520532 28.27656556576224 31 29.152641820731382 21.117814088813407 21.2557900431444 28.473754047310813 32 30.01804905488732 22.94476816949855 19.759306459817573 27.277876315796558 33 29.655797579284226 22.820658712450513 20.845920929744334 26.677622778520927 34 28.41064425921091 23.794758614749842 21.030836269287807 26.76376085675144 35 30.45932233954078 24.399566133664205 18.63983442024207 26.501277106552944 36 32.927472728594 22.731904517108383 19.866147390746157 24.47447536355146 37 32.142346915431055 23.151710569166962 20.62006281910842 24.085879696293567 38 28.357697493964356 25.879427145713958 23.3442912395066 22.418584120815087 39 30.972070527502872 24.3445092492659 22.351910815168097 22.331509408063134 40 29.860845178081675 25.273209292060407 19.87173490013269 24.994210629725227 41 31.361742786164726 25.20914133761099 18.22836118565011 25.200754690574172 42 31.756690342705955 25.669825565277776 18.398322670592638 24.17516142142363 43 31.415496994964244 24.406262532196813 19.047927157825608 25.130313315013336 44 29.01717432437161 24.132732954193727 19.911633377563298 26.93845934387137 45 27.162293462667847 24.611062514971348 21.584204250921157 26.642439771439648 46 26.896493810945167 21.782135580538455 22.777164419730692 28.544206188785687 47 27.615183168569992 20.7075251047658 24.720551860753666 26.95673986591054 48 27.707393222318817 21.050742444346955 23.15102155066843 28.090842782665803 49 28.34302355312844 21.587929257178846 23.15734114220965 26.911706047483065 50 27.788815830200004 23.557208721466964 21.64043461994978 27.013540828383253 51 27.826851804501768 23.11553709799404 23.080278729514482 25.977332367989707 52 29.156086913224044 23.04665677996894 23.364972560376593 24.43228374643043 53 27.583563679035805 23.28191353356139 23.176762851137013 25.957759936265788 54 26.847885709056555 23.75644272668305 22.31132331923896 27.084348245021438 55 26.964835833268292 24.17691626541208 22.24741685350013 26.6108310478195 56 28.37593495234737 23.297513343004713 21.47007479618779 26.856476908460124 57 27.80605205857734 22.872281270270197 21.63329681894155 27.688369852210915 58 27.93404801059366 22.72569258470756 22.696387766691878 26.643871638006907 59 27.475355477024195 22.710103541178274 22.590494236198772 27.224046745598763 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.5 5 1.0 6 7.5 7 14.0 8 135.5 9 938.0 10 1619.0 11 3240.5 12 4862.0 13 5932.0 14 7268.5 15 7535.0 16 8026.0 17 8517.0 18 9972.5 19 11809.0 20 12190.0 21 12995.0 22 13800.0 23 16023.0 24 18246.0 25 24308.0 26 33715.0 27 37060.0 28 44627.5 29 52195.0 30 58052.5 31 69788.5 32 75667.0 33 80723.0 34 85779.0 35 93584.5 36 99353.0 37 97316.0 38 105443.0 39 113570.0 40 121772.5 41 129975.0 42 145166.0 43 180245.0 44 200133.0 45 200529.0 46 200925.0 47 208253.5 48 249325.5 49 283069.0 50 304481.5 51 325894.0 52 376719.5 53 470166.5 54 512788.0 55 559241.5 56 605695.0 57 680051.5 58 836694.0 59 918980.0 60 910462.0 61 901944.0 62 836785.0 63 771626.0 64 697292.5 65 559330.0 66 495701.0 67 426590.5 68 357480.0 69 291248.5 70 197370.5 71 169724.0 72 151273.5 73 132823.0 74 101327.5 75 51952.0 76 34072.0 77 24000.0 78 13928.0 79 10895.5 80 7863.0 81 6388.5 82 3421.5 83 1929.0 84 1196.5 85 464.0 86 306.0 87 103.5 88 59.0 89 34.5 90 10.0 91 6.5 92 1.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 9288575.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 12.121174472256987 #Duplication Level Percentage of deduplicated Percentage of total 1 82.69164568322155 10.023198647243847 2 7.157033626069382 1.7350330657079411 3 2.815718313132096 1.023894388146098 4 1.6231505303899405 0.7869796309437176 5 1.057794089497589 0.6410853357261251 6 0.7040634724087781 0.5120445713165934 7 0.5002614587258344 0.4244629496073139 8 0.37152953037961994 0.36026994074616614 9 0.27323332418459423 0.29807179146685997 >10 1.43193385314084 3.3093570233526464 >50 0.1670434152371735 1.4501289680339373 >100 0.6464579405486534 23.44500959125692 >500 0.4445575246640376 37.33658846829557 >1k 0.11557723840006826 18.65387562815634 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.005813593581362049 0.0 0.0 0.0 0.0 12 0.010313745649897859 0.0 0.0 0.0 0.0 13 0.016784059987673027 0.0 0.0 0.0 0.0 14 0.04859733597457091 0.0 0.0 0.0 0.0 15 0.0826606879957367 0.0 0.0 0.0 0.0 16 0.10770220405175175 0.0 0.0 0.0 0.0 17 0.122257719833236 0.0 0.0 0.0 0.0 18 0.13874033422780135 0.0 0.0 0.0 0.0 19 0.15669787884578634 0.0 0.0 0.0 0.0 20 0.19349577303300022 0.0 0.0 0.0 0.0 21 0.23237148862984902 0.0 0.0 0.0 0.0 22 0.25544284241662474 0.0 0.0 0.0 0.0 23 0.2746492330631986 0.0 0.0 0.0 0.0 24 0.29458770586446253 0.0 0.0 0.0 0.0 25 0.3150106447975066 0.0 0.0 0.0 0.0 26 0.3393631423549899 0.0 0.0 0.0 0.0 27 0.36305891915606 0.0 0.0 0.0 0.0 28 0.38953230177933645 0.0 0.0 0.0 0.0 29 0.4210871958292849 0.0 0.0 0.0 0.0 30 0.4583264924921207 0.0 0.0 0.0 1.076591403955935E-5 31 0.4906888300950361 0.0 0.0 0.0 1.076591403955935E-5 32 0.5173559991710246 0.0 0.0 0.0 1.076591403955935E-5 33 0.540653437152631 0.0 0.0 0.0 1.076591403955935E-5 34 0.5648444459995209 0.0 0.0 0.0 1.076591403955935E-5 35 0.588249543121523 0.0 0.0 0.0 1.076591403955935E-5 36 0.6107395375501624 0.0 0.0 0.0 1.076591403955935E-5 37 0.633713998110582 0.0 0.0 0.0 1.076591403955935E-5 38 0.6551381670493052 0.0 0.0 0.0 1.076591403955935E-5 39 0.6782633504062787 0.0 0.0 0.0 1.076591403955935E-5 40 0.7012162791386192 0.0 0.0 0.0 1.076591403955935E-5 41 0.7223390024842347 0.0 0.0 0.0 1.076591403955935E-5 42 0.7430418551823073 0.0 0.0 0.0 1.076591403955935E-5 43 0.7632602417485997 0.0 0.0 0.0 1.076591403955935E-5 44 0.7845013901486504 0.0 0.0 0.0 1.076591403955935E-5 45 0.8059901545716108 0.0 0.0 0.0 1.076591403955935E-5 46 0.825605649951688 0.0 0.0 0.0 1.076591403955935E-5 47 0.845641015979308 0.0 0.0 0.0 1.076591403955935E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACCGTA 170 0.0 51.441177 19 ATGGGAT 52240 0.0 50.89481 9 ATTAGGA 6810 0.0 50.820854 1 CGGTATA 120 0.0 50.791664 23 TACGGAC 16675 0.0 50.425488 2 ATGGGGG 215910 0.0 50.352577 9 CATGGGG 628195 0.0 50.320873 8 GGACATG 973965 0.0 50.27943 5 ACATGGG 956940 0.0 50.23353 7 GACATGG 971635 0.0 50.210724 6 ACCGATA 190 0.0 50.21053 15 ATGGGGT 82065 0.0 50.161583 9 TAGGACA 79620 0.0 50.071083 3 ATGGGAG 90340 0.0 50.066635 9 TACGCCT 90 0.0 50.055553 50 TAATCGA 90 0.0 50.055553 40 CGGACAT 200650 0.0 50.048218 4 TGGACAT 343250 0.0 50.019955 4 TCGGACA 72115 0.0 50.01983 3 TTGGACA 129225 0.0 49.971134 3 >>END_MODULE