##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528088_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1202621 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.585975964164938 31.0 31.0 31.0 30.0 34.0 2 31.331293898909134 31.0 31.0 34.0 30.0 34.0 3 31.593314103113116 31.0 31.0 34.0 30.0 34.0 4 35.53588952795602 35.0 35.0 37.0 35.0 37.0 5 35.55375550568301 35.0 35.0 37.0 35.0 37.0 6 35.39006553186748 35.0 35.0 37.0 35.0 37.0 7 33.845496627782154 35.0 35.0 35.0 31.0 37.0 8 34.730437103626166 35.0 35.0 35.0 32.0 37.0 9 36.35037139714008 37.0 35.0 39.0 32.0 39.0 10 36.62136034544549 38.0 35.0 39.0 32.0 39.0 11 37.46786560354426 39.0 37.0 39.0 35.0 39.0 12 37.41138978946817 39.0 37.0 39.0 35.0 39.0 13 36.86930213259206 39.0 37.0 39.0 34.0 39.0 14 35.07377885468489 38.0 32.0 40.0 25.0 40.0 15 32.459784088253905 36.0 30.0 39.0 21.0 40.0 16 32.62115412918949 35.0 30.0 38.0 21.0 40.0 17 32.43177276964231 35.0 30.0 38.0 21.0 40.0 18 32.524851137640205 35.0 30.0 38.0 21.0 40.0 19 32.702103156355996 35.0 30.0 39.0 22.0 40.0 20 33.16449904001344 35.0 30.0 39.0 23.0 40.0 21 33.13128824459243 35.0 30.0 38.0 23.0 40.0 22 33.62181851140135 35.0 31.0 39.0 24.0 40.0 23 33.519319885483455 35.0 31.0 38.0 25.0 40.0 24 33.53792341893248 35.0 31.0 38.0 26.0 40.0 25 33.36681797507278 35.0 31.0 38.0 24.0 40.0 26 32.79663751090327 35.0 31.0 38.0 22.0 40.0 27 32.642937384263206 35.0 31.0 37.0 22.0 40.0 28 32.68029828183609 35.0 31.0 37.0 22.0 40.0 29 32.49063753252271 35.0 31.0 37.0 22.0 40.0 30 32.11393115536815 34.0 31.0 36.0 21.0 39.0 31 31.696999304020135 34.0 30.0 36.0 21.0 39.0 32 31.28372197059589 34.0 30.0 35.0 20.0 39.0 33 31.016584609781468 34.0 29.0 35.0 18.0 39.0 34 30.869205676601357 33.0 29.0 35.0 18.0 38.0 35 30.730713998840866 33.0 29.0 35.0 18.0 37.0 36 30.762166135465787 33.0 30.0 35.0 20.0 37.0 37 30.750364412395925 33.0 30.0 35.0 20.0 37.0 38 30.317303622670817 33.0 29.0 35.0 18.0 36.0 39 30.16666846828718 33.0 29.0 35.0 18.0 36.0 40 29.900505645585767 33.0 27.0 35.0 17.0 36.0 41 29.44342980872611 33.0 26.0 35.0 15.0 35.0 42 29.103263621706258 33.0 25.0 35.0 12.0 35.0 43 28.77476362045898 33.0 25.0 35.0 10.0 35.0 44 28.334637429414588 33.0 24.0 35.0 10.0 35.0 45 28.170646446386684 33.0 23.0 35.0 10.0 35.0 46 27.854214253700874 33.0 23.0 35.0 9.0 35.0 47 27.632140133924153 33.0 23.0 35.0 9.0 35.0 48 27.272164713571442 33.0 23.0 35.0 8.0 35.0 49 26.896978349787673 33.0 20.0 34.0 8.0 35.0 50 26.510058447341265 33.0 20.0 34.0 8.0 35.0 51 26.258161964575706 32.0 20.0 34.0 8.0 35.0 52 25.425239539306233 31.0 17.0 34.0 8.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 5.0 13 14.0 14 50.0 15 143.0 16 412.0 17 890.0 18 1921.0 19 3696.0 20 6248.0 21 9828.0 22 14555.0 23 20161.0 24 26890.0 25 35438.0 26 44902.0 27 55547.0 28 65542.0 29 75288.0 30 84656.0 31 95488.0 32 106844.0 33 115097.0 34 127339.0 35 146348.0 36 110941.0 37 42492.0 38 11004.0 39 879.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.327010754011447 23.508570031622597 38.20314130553184 7.961277908834122 2 22.970079517986132 20.571485114595536 32.772835332162 23.68560003525633 3 21.902910393216153 17.240261063127953 43.22949624195819 17.62733230169771 4 38.073507780090324 17.56147614252537 27.616763718578007 16.748252358806308 5 0.0 0.0 0.0 100.0 6 100.0 0.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 100.0 0.0 0.0 0.0 9 100.0 0.0 0.0 0.0 10 0.0 0.0 0.0 100.0 11 98.7564660853253 0.8494779319502985 0.13420686982848296 0.2598491128959165 12 97.22106964704591 1.9459164607968764 0.3143966386750273 0.518617253482186 13 93.45745667171951 4.365548248367524 1.2745495047899547 0.9024455751230022 14 46.43457914006158 32.92375569693195 8.075029456495438 12.566635706511029 15 30.240283514091303 36.82382063842225 21.618448372346734 11.317447475139716 16 36.61868535473769 29.462814968306724 18.96682329678261 14.951676380172973 17 23.401803228115924 29.449344390294197 25.431869225633015 21.716983155956864 18 19.774642218953435 34.4842639534816 29.33891891127795 16.40217491628701 19 22.132409129725826 36.42095057378842 28.598619182601997 12.848021113883759 20 19.21253661793699 32.623162243133955 30.7287166946195 17.435584444309555 21 24.642177377577806 32.26552671207305 20.78468611474438 22.307609795604765 22 27.753465139890288 33.885737900801665 19.998486638766494 18.36231032054155 23 25.8573565570533 34.71983276526853 20.797824085892398 18.624986591785774 24 22.22811675498765 34.90301599589563 20.39686651072948 22.47200073838724 25 28.551472159558166 33.65806850204678 19.795596451417364 17.994862886977693 26 27.43931795636364 34.130952311659286 19.731902236864315 18.697827495112758 27 27.83412230453318 39.045135583030735 14.567265996519268 18.553476115916816 28 27.642956509157912 37.884587081050476 15.26324586049969 19.20921054929192 29 25.59418137551232 39.14591546297628 13.92375486541479 21.33614829609661 30 27.93024568837564 42.025625695875924 14.846489459272705 15.19763915647573 31 25.658457652078255 44.48267575570358 13.250891178517588 16.607975413700576 32 22.472083890103367 49.67691400698973 13.94562376675611 13.90537833615079 33 23.292708176557703 49.43327947873853 13.01523921501454 14.258773129689237 34 20.883886112083523 53.29351474820413 13.75778404002591 12.064815099686435 35 20.719744624449433 51.500431141648114 15.643664961779313 12.136159272123137 36 20.778699191183257 50.54651465424269 15.930372078984151 12.7444140755899 37 20.744606987571313 51.69949635005542 15.261416522744906 12.294480139628362 38 18.197420467462315 52.14227923843006 17.762703295551965 11.897596998555654 39 19.095126394766098 54.615294427754044 13.691345818840684 12.598233358639172 40 21.134588536205502 53.604751621666345 12.012595821958872 13.24806402016928 41 21.39044636672734 51.542672213440476 12.5198212903317 14.547060129500483 42 21.33714611669013 52.69798215730476 13.34693141064392 12.617940315361198 43 20.623870695755354 52.36570789966248 15.053204625563666 11.957216779018493 44 21.358599259450816 51.41977397700522 13.412371811235626 13.809254952308333 45 21.88652950513919 50.47541993695437 14.403872874330318 13.234177683576123 46 19.824450096913328 50.763540633333356 12.360253147084578 17.05175612266874 47 21.41863479849429 50.06440100414012 14.72816456722442 13.788799630141165 48 22.141389515067505 50.508930078553426 13.66806333832521 13.681617068053859 49 20.930367921398346 51.46226450394597 13.571357892469862 14.036009682185826 50 18.35449405922564 53.31654777357122 14.58788762211869 13.741070545084444 51 18.28838844490492 51.84933574251572 15.628614501160381 14.233661311418977 52 21.87946160926842 49.538466399638786 15.000652740971596 13.581419250121193 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.5 10 3.0 11 38.0 12 73.0 13 656.5 14 2020.0 15 2800.0 16 7425.0 17 12050.0 18 15787.0 19 19524.0 20 18647.0 21 17770.0 22 14520.0 23 11270.0 24 12725.0 25 14180.0 26 16785.0 27 19390.0 28 23884.5 29 28379.0 30 34649.5 31 40920.0 32 47385.5 33 53851.0 34 53659.0 35 53467.0 36 50503.0 37 47539.0 38 45496.5 39 43067.5 40 42681.0 41 46918.5 42 51156.0 43 48954.5 44 46753.0 45 47079.5 46 47406.0 47 46978.0 48 46550.0 49 46669.0 50 46788.0 51 46351.5 52 45915.0 53 50557.0 54 55199.0 55 56491.0 56 57783.0 57 60923.0 58 64063.0 59 63509.0 60 62955.0 61 61088.0 62 59221.0 63 64456.5 64 59322.0 65 48952.0 66 43130.0 67 37308.0 68 30500.5 69 23693.0 70 18281.5 71 12870.0 72 9471.0 73 6072.0 74 6386.0 75 6700.0 76 4129.5 77 1559.0 78 1172.0 79 785.0 80 1035.5 81 1286.0 82 931.0 83 576.0 84 481.5 85 387.0 86 275.0 87 163.0 88 120.0 89 70.5 90 64.0 91 50.5 92 37.0 93 27.0 94 17.0 95 9.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1202621.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.66728888867213 #Duplication Level Percentage of deduplicated Percentage of total 1 85.15409250649776 30.372156174819665 2 6.210334578200917 4.430115949920038 3 2.172583223789024 2.324704604326972 4 1.1677277632267975 1.6659873389733248 5 0.743716560266826 1.326317670316321 6 0.5464572781050374 1.1694389762093895 7 0.41587144957479993 1.0383104992774663 8 0.34810283383031 0.9932707469752879 9 0.27715167461328116 0.8896723959970043 >10 2.488854927881835 18.033520965976912 >50 0.23451210287113836 5.691295530431508 >100 0.18746758367769897 13.99440280226807 >500 0.03393607943772463 8.520687626469968 >1k 0.019191438026851172 9.550118718038037 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ATGCCGTGGCGGGGCCTTTCTCCTCGTTGGGCGTCTGAAGGCAAGATGGGTC 2837 0.23590141865142883 No Hit AGTTCGTGGCGGGGCTTTTTTCCTCCTCTCCAGCTCCGGCGCCGTAGCCATC 2381 0.1979842360976567 No Hit TGCGCGTGGCGGGCACCGTGTCCTCACGTGGTCAATAGGGCAAGGGAGCTCT 2252 0.18725766471731328 No Hit ACGACGTGGCGGGGAGGCAGGTTTGGGAGTGATGTAGCCACAAGCCACTGCA 2146 0.17844358280788378 No Hit TCTGCGTGGCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2087 0.1735376315564089 No Hit CCAGCGTGGCGGGCTTTCCCCGTTCTCTTCGGTTCTCATCGCTGTGCGGACG 1990 0.16547191509211964 No Hit ATGGCGTGGCGGGAAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGA 1940 0.16131432928578496 No Hit TGCACGTGGCGGGGCCTTTCTCCTCGTTGGGCGTCTGAAGGCAAGATGGGTC 1926 0.16015020526001125 No Hit TTGACGTGGCGGGGGCTGGCGAGATGGCTCAGCGGTTAAGAGCACTGACTGC 1842 0.15316546110536902 No Hit GGCGCGTGGCGGGCGATACGACGACGAGTCGTCGGAGACACGCAGGGATGAG 1835 0.15258339909248217 No Hit ATTGCGTGGCGGGCTTTCCGGTGGAGGAGTCTGGAGACGACGATCAGAAATG 1831 0.1522507922279754 No Hit GTGACGTGGCGGGCTCTTCGCCATCTTTACCCCGGCAGGCCGACATCTATCA 1823 0.15158557849896184 No Hit GTGACGTGGCGGGAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAA 1819 0.15125297163445509 No Hit ACTCCGTGGCGGGCTGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAATA 1757 0.1460975652346001 No Hit AAACCGTGGCGGGGCCTTTCGCCGCCGGACGCCGCCGAGGTCGCACGCGTGA 1740 0.1446839860604463 No Hit TATCCGTGGCGGGGGGCTGGAGAGATGGCTCAGCGGGTAAGAGCACTGACTG 1718 0.14285464830565905 No Hit TGTGCGTGGCGGGGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATAT 1713 0.14243888972502558 No Hit TTTGCGTGGCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1672 0.13902966936383115 No Hit GTTCCGTGGCGGGGCTCTCACTTCACCAGCACCGCCCGCGCCTGCTTTCATC 1634 0.13586990415101682 No Hit CATGCGTGGCGGGTAGTGGAAGACATGCATCGCCAGTGGGCAAACCTGATGG 1628 0.13537099385425666 No Hit ATTGCGTGGCGGGATGCTTTGTGTACCTCAACCAAGTATGAAGAGCTGTACT 1621 0.1347889318413698 No Hit CCTACGTGGCGGGGTCAAGTAATATCAATCAGGCACAAGAAATTGTGCCTGA 1597 0.13279329065432915 No Hit AAATCGTGGCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 1593 0.1324606837898224 No Hit GCGACGTGGCGGGGGGCTGGAGAGATGGCTCAGCGGGTAAGAGCACTGACTG 1510 0.12555909135130686 No Hit AGCTCGTGGCGGGACAAAACAATTCACTAAACAAGCCTACTAACAAATGTAG 1500 0.12472757419003991 No Hit TCTGCGTGGCGGGGCTTTCCTTTCGCTGCTGCGGCCGCAGCCATGAGTATGC 1497 0.12447811904165984 No Hit ATATCGTGGCGGGCTTTTCCGAGTAACCGCCAAGATGGCCGAAGTGGAGCAG 1492 0.12406236046102637 No Hit ATCGCGTGGCGGGCTCTTATCGACGGGGACTGCTCTAAGGTAATGTGTTCTC 1461 0.12148465726109889 No Hit TTAGCGTGGCGGGAACGCAGAGTTTGTAAAGTTGGGAGAGTACCTCGTGGCG 1460 0.1214015055449722 No Hit CGAGCGTGGCGGGGCTTTTCCCTTTCTGCCACCGCCATGCCATCCAGACTGA 1437 0.11948901607405824 No Hit CATGCGTGGCGGGGGGGCTGGAGAGATGGCTCAGCGGGTAAGAGCACTGACT 1434 0.11923956092567817 No Hit TGGGCGTGGCGGGGGTGCATCGGTTTATTTCAAAGCCGCCCGTAGCGCCAGT 1433 0.11915640920955148 No Hit TTTGCGTGGCGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGAACCGACT 1398 0.11624609914511722 No Hit GCTTCGTGGCGGGGGTTGCCTTAAGTCCTCGGCTCTGTCAGTACATATTCAT 1396 0.11607979571286381 No Hit TTTGCGTGGCGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1376 0.11441676139032994 No Hit GCCACGTGGCGGGATCTTTGTTTCCAAACCCGCTGAATAATTTTTAGCGAGT 1357 0.11283687878392279 No Hit TATACGTGGCGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGC 1356 0.11275372706779609 No Hit GGTTCGTGGCGGGGGCTGCGATTGAATACATCCGGGCAAGGAAGTCTCTCCA 1347 0.11200536162265584 No Hit TCAACGTGGCGGGGTTCAGGAAGACAAATACAATAAAAGGTCTTTCTATCAC 1339 0.1113401478936423 No Hit TCCTCGTGGCGGACCTGTAGTTTTCAGAAGTGTCTGATAATTAAAACATTAT 1320 0.10976026528723512 No Hit CACGCGTGGCGGGGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACA 1311 0.10901189984209489 No Hit TTGACGTGGCGGGGACACACAGTCCCTGCCATGGCGCTCAGCGAGCCTATCT 1307 0.10867929297758812 No Hit TACTCGTGGCGGGTGATCTGGCATTGCTGTGAGCTGTGGTGTAGGTCACAGA 1298 0.10793092753244787 No Hit TACACGTGGCGGGGTTGTGGTGCAGGGGCTTATGCTCCACTGCACGCGGGAT 1261 0.10485431403576023 No Hit TGTGCGTGGCGGGTGCAGAACTTGAGTATGCATGAATTTGGGTGTACTGTAG 1248 0.10377334172611322 No Hit AACACGTGGCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 1203 0.10003151450041202 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.02918625236046934 0.0 0.0 0.0 0.0 12 0.10626789320991402 0.0 0.0 0.0 0.0 13 0.12181726412560566 0.0 0.0 0.0 0.0 14 0.28030443506308306 0.0 0.0 0.0 0.0 15 0.4402883368908409 0.0 0.0 0.0 0.0 16 0.5769897582031247 0.0 0.0 0.0 0.0 17 0.6770212727035367 0.0 0.0 0.0 0.0 18 0.804908612106391 0.0 0.0 0.0 0.0 19 0.9367040821671998 0.0 0.0 0.0 0.0 20 1.0769810272729314 0.0 0.0 0.0 0.0 21 1.21858839983669 0.0 0.0 0.0 0.0 22 1.370423433484032 0.0 0.0 0.0 0.0 23 1.5042976964480081 0.0 0.0 0.0 0.0 24 1.6446577932698665 0.0 0.0 0.0 0.0 25 1.788427110452919 0.0 0.0 0.0 0.0 26 1.9495751363064506 0.0 0.0 0.0 0.0 27 2.13442140125609 0.0 0.0 0.0 0.0 28 2.3166899630058015 0.0 0.0 0.0 0.0 29 2.538871348496326 0.0 0.0 0.0 0.0 30 2.8257447691334177 0.0 0.0 0.0 0.0 31 3.0573222985462585 0.0 0.0 0.0 0.0 32 3.2240414893802787 0.0 0.0 0.0 0.0 33 3.362489096731223 0.0 0.0 0.0 0.0 34 3.5124947926237775 0.0 0.0 0.0 0.0 35 3.6577608406971107 0.0 0.0 0.0 0.0 36 3.807932840021919 0.0 0.0 0.0 0.0 37 3.959435266804754 0.0 0.0 0.0 0.0 38 4.107195866361888 0.0 0.0 0.0 0.0 39 4.27009007825408 0.0 0.0 0.0 0.0 40 4.428660400907684 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTAAT 145 0.0 46.000004 38 TCTTGTA 105 0.0 46.000004 30 TCCATGC 115 0.0 46.000004 24 ACGCCTT 145 0.0 46.000004 26 TCATTTC 115 0.0 46.000004 23 TCCGAGA 105 0.0 46.000004 27 TAGGTCA 145 0.0 46.000004 42 ACATTGT 145 0.0 46.000004 46 CCCAGCG 155 0.0 46.000004 29 ATGCTCG 115 0.0 46.000004 27 CTAAGGT 145 0.0 46.000004 35 CTGACAT 115 0.0 46.000004 17 TGTGCCT 115 0.0 46.000004 44 TGTGACT 105 0.0 46.000004 27 TGTTGGC 105 0.0 46.000004 24 TAACCTT 105 0.0 46.000004 35 GTTAAGG 115 0.0 46.000004 14 TATCTGA 115 0.0 46.000004 37 TTCCAGT 115 0.0 46.000004 27 CATAGGG 105 0.0 46.000004 32 >>END_MODULE