##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528084_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9558971 Sequences flagged as poor quality 0 Sequence length 59 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.473040665151093 31.0 31.0 31.0 28.0 33.0 2 31.192034895806252 31.0 31.0 33.0 30.0 34.0 3 31.615765755540004 31.0 31.0 34.0 30.0 34.0 4 35.381109640357735 37.0 35.0 37.0 33.0 37.0 5 35.26585173236743 37.0 35.0 37.0 33.0 37.0 6 34.78520167076561 35.0 35.0 37.0 32.0 37.0 7 35.01227642598769 36.0 35.0 37.0 32.0 37.0 8 34.376906991348754 35.0 35.0 37.0 30.0 37.0 9 36.537289317019585 38.0 35.0 39.0 32.0 39.0 10 36.83050497799397 39.0 35.0 39.0 33.0 39.0 11 36.71211095838663 37.0 35.0 39.0 33.0 39.0 12 36.72943970642865 39.0 37.0 39.0 32.0 39.0 13 36.74073276297208 39.0 37.0 39.0 32.0 39.0 14 36.97938962258595 39.0 36.0 40.0 31.0 40.0 15 36.32860629036326 38.0 36.0 40.0 30.0 40.0 16 35.80179048560771 38.0 35.0 40.0 30.0 40.0 17 35.91804149212295 38.0 35.0 40.0 30.0 40.0 18 36.14401236283696 38.0 35.0 40.0 30.0 40.0 19 36.31889949242444 38.0 35.0 40.0 30.0 40.0 20 36.20019100382248 38.0 35.0 40.0 30.0 40.0 21 36.13625012566729 38.0 35.0 40.0 30.0 40.0 22 36.04164109295865 38.0 35.0 40.0 30.0 40.0 23 35.90722934508327 38.0 34.0 40.0 29.0 40.0 24 35.97967751968282 38.0 34.0 40.0 30.0 40.0 25 36.01228845657132 38.0 35.0 40.0 30.0 40.0 26 35.68863259444976 38.0 34.0 40.0 28.0 40.0 27 35.46629537844607 38.0 34.0 40.0 27.0 40.0 28 35.36046620499215 38.0 34.0 40.0 27.0 40.0 29 35.265143497140016 38.0 34.0 40.0 27.0 40.0 30 35.11204825289249 38.0 34.0 40.0 26.0 40.0 31 35.139673715926115 38.0 34.0 40.0 26.0 40.0 32 35.06705491626661 38.0 33.0 40.0 26.0 40.0 33 34.78665329144737 37.0 33.0 40.0 26.0 40.0 34 34.55092666354987 37.0 33.0 40.0 25.0 40.0 35 34.426871992811776 37.0 33.0 40.0 24.0 40.0 36 34.06322678455662 37.0 33.0 40.0 24.0 40.0 37 33.97652854057199 36.0 33.0 39.0 23.0 40.0 38 33.835843627938615 36.0 32.0 39.0 23.0 40.0 39 33.511393328842615 36.0 32.0 39.0 23.0 40.0 40 33.20277287168253 35.0 31.0 39.0 22.0 40.0 41 33.0582461229352 35.0 31.0 39.0 22.0 40.0 42 32.94895527980993 35.0 31.0 39.0 22.0 40.0 43 32.76657278278174 35.0 31.0 38.0 21.0 40.0 44 32.496688712623985 35.0 31.0 38.0 20.0 40.0 45 32.37279451941009 35.0 31.0 38.0 20.0 40.0 46 32.14497449568578 35.0 31.0 38.0 20.0 40.0 47 31.756706658070204 35.0 30.0 37.0 18.0 40.0 48 31.475041612742626 34.0 30.0 37.0 18.0 40.0 49 31.212305906148266 34.0 29.0 37.0 15.0 40.0 50 30.79448729366372 34.0 29.0 36.0 14.0 39.0 51 30.52924085657337 34.0 28.0 36.0 13.0 39.0 52 29.942280398172564 34.0 27.0 36.0 12.0 39.0 53 29.910590690148553 33.0 27.0 35.0 12.0 39.0 54 29.879167538012197 33.0 27.0 35.0 12.0 38.0 55 29.787947468404287 33.0 27.0 35.0 12.0 38.0 56 29.501859248239167 33.0 27.0 35.0 11.0 38.0 57 29.240570977775747 33.0 26.0 35.0 10.0 37.0 58 29.082144197319984 33.0 26.0 35.0 10.0 37.0 59 28.285200153865933 33.0 25.0 35.0 9.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 8.0 13 23.0 14 94.0 15 429.0 16 1490.0 17 3882.0 18 8728.0 19 17184.0 20 30343.0 21 48252.0 22 71342.0 23 100041.0 24 133741.0 25 171617.0 26 215871.0 27 265624.0 28 313677.0 29 362512.0 30 420427.0 31 491969.0 32 577115.0 33 696656.0 34 889591.0 35 1091531.0 36 1318298.0 37 1378615.0 38 896989.0 39 52919.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.58161500856107 20.600376337578595 34.50347322949301 15.314535424367328 2 18.743513292382623 24.087278850411828 35.68120459827737 21.488003258928185 3 21.60574605781313 23.85382275979287 36.66031626207465 17.88011492031935 4 24.480731241887856 22.296604937916435 35.51600899301818 17.70665482717753 5 100.0 0.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 100.0 0.0 0.0 0.0 8 0.0 100.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 0.0 100.0 11 99.48383565553239 0.36280055667079647 0.09969692344500261 0.053666864351821976 12 99.16943989054889 0.6145954412875612 0.14134366554726446 0.07462100261628579 13 94.1809426977025 4.162759778222991 0.6329865421707002 1.0233109819038053 14 50.29757910134888 32.42811386288336 6.833130888251465 10.441176147516297 15 33.27379066219575 28.455677917633604 18.711083023476064 19.55944839669458 16 31.673199971001065 18.59272300334419 26.384325258440473 23.349751767214276 17 24.48903757527876 17.96736280505506 27.79509426276113 29.748505356905046 18 23.234007091349056 23.233588636266393 28.024731950750763 25.507672321633784 19 28.036365002048864 19.452438970680003 29.406041717251785 23.10515431001935 20 27.70153816765424 20.42986635276956 26.671500520296586 25.197094959279614 21 34.70450951258247 20.728747895563234 19.58709781628169 24.979644775572602 22 33.01059287657636 21.812285025239643 21.225537769703454 23.951584328480543 23 28.401163681739384 24.57254028702462 22.47558863814944 24.550707393086558 24 28.052768441289338 26.40523755119667 21.26584545554119 24.276148551972803 25 30.557745179894365 21.937403094956558 23.56808070659488 23.936771018554193 26 28.977522789848404 22.094532978497373 19.74588059739903 29.182063634255194 27 28.846337121432843 26.281521306006685 18.909472578167673 25.962668994392807 28 31.36586563553755 25.472971933903764 18.527161553267607 24.634000877291083 29 29.35787753723701 22.321607629105685 19.65583952498653 28.664675308670777 30 31.028622223040536 22.347478614591466 18.900287489103167 27.72361167326483 31 27.10896392509194 22.617518140812436 20.64532887483391 29.62818905926171 32 28.253281655525477 27.09816778395917 18.990161179482605 25.658389381032748 33 30.73229325625112 25.112859951139093 18.334494371831443 25.82035242077835 34 28.381642752133047 26.875528757227112 19.790592522981814 24.952235967658027 35 33.692821120599696 24.47270736567775 18.664916966481016 23.16955454724154 36 30.002664512738868 23.96691024588316 21.487490651451918 24.54293458992605 37 30.17356156849937 25.196184819474816 22.951277914746264 21.67897569727955 38 27.989728183085816 27.02154865832316 24.12274291866771 20.865980239923314 39 30.292863112567243 27.5024372393221 21.386350057971722 20.818349590138936 40 30.02617122700759 29.15781416221474 18.424859746933013 22.391154863844655 41 31.66705914266295 30.233986482436237 16.523776460876384 21.57517791402443 42 30.28853210246166 31.0287268368112 17.26701545595232 21.415725604774824 43 31.25475534971285 28.87208257039382 17.359849716041612 22.513312363851714 44 27.981369542809574 29.550178570475836 19.007882752233478 23.46056913448111 45 26.372545747863445 27.310000208181407 21.588610322177985 24.728843721777167 46 26.27025440290592 26.951352818206058 18.59240916203219 28.185983616855832 47 29.376551095300947 25.161348433842935 21.012313982331364 24.449786488524758 48 29.92678814487459 24.846408677251976 20.448435297062833 24.7783678808106 49 29.083444232648052 25.623678531925663 20.360350502161793 24.93252673326449 50 27.157044414090176 27.636478863676857 20.477653923209935 24.728822799023035 51 26.35216698533765 26.980058836876896 21.812745325830573 24.85502885195488 52 28.928166012848035 25.908343063285788 21.295932375984822 23.867558547881355 53 25.812014703256242 26.29860473475649 20.999697561589002 26.88968300039826 54 25.912266079685775 27.95551948007793 21.478954167765547 24.65326027247075 55 28.110253708270484 25.93256115119504 21.337411736054015 24.619773404480462 56 26.874493080897516 25.767679387247856 23.187297042746547 24.170530489108085 57 27.258593001275973 24.782636122653788 22.36098425238449 25.59778662368575 58 28.432872115628342 24.950656299720965 21.079496945853272 25.536974638797417 59 25.397189718433083 25.51743278643695 21.76560636076833 27.319771134361638 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 3.0 5 6.0 6 158.5 7 311.0 8 559.0 9 1802.0 10 2797.0 11 7227.5 12 11658.0 13 14900.0 14 17776.5 15 17411.0 16 16677.5 17 15944.0 18 15383.0 19 15741.5 20 16661.0 21 19111.5 22 21562.0 23 26704.5 24 31847.0 25 39483.0 26 55531.0 27 63943.0 28 73444.0 29 82945.0 30 88698.5 31 101021.5 32 107591.0 33 109026.5 34 110462.0 35 115504.0 36 116209.0 37 111872.0 38 123484.5 39 135097.0 40 136812.5 41 138528.0 42 158899.0 43 199747.0 44 220224.0 45 227263.5 46 234303.0 47 257494.5 48 305179.0 49 329672.0 50 387019.0 51 444366.0 52 484065.0 53 578896.5 54 634029.0 55 673512.5 56 712996.0 57 737763.5 58 777745.0 59 792959.0 60 782634.5 61 772310.0 62 713311.0 63 654312.0 64 603539.5 65 481301.0 66 409835.0 67 344344.5 68 278854.0 69 245443.0 70 190681.5 71 169331.0 72 139923.0 73 110515.0 74 85330.5 75 46242.0 76 32338.0 77 24161.5 78 15985.0 79 11105.0 80 6225.0 81 4306.0 82 1666.5 83 946.0 84 837.5 85 729.0 86 630.0 87 429.5 88 328.0 89 202.5 90 77.0 91 38.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 9558971.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.639950146579036 #Duplication Level Percentage of deduplicated Percentage of total 1 86.2265600749449 17.797119012578648 2 5.9699023393275406 2.46436973327332 3 2.3259988659017643 1.4402550189963537 4 1.2565672625163615 1.0374194261664396 5 0.7554590522414284 0.7796318588022465 6 0.5203114188460274 0.6443521047406684 7 0.3603300565811252 0.52060360829039 8 0.28140437000999663 0.4646537734428649 9 0.2158173111875529 0.4009012689311843 >10 1.2894072157303842 5.231288558072955 >50 0.13764812797768847 2.0094882711435047 >100 0.3998762933964023 23.814275025453732 >500 0.21279360516961482 30.071872205154733 >1k 0.04786892110450221 13.246752939655332 >5k 5.508506456214293E-5 0.07701719529763304 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 1.232611752875911 0.0 0.0 0.0 0.0 7 1.232611752875911 0.0 0.0 0.0 0.0 8 1.232611752875911 0.0 0.0 0.0 0.0 9 1.232611752875911 0.0 0.0 0.0 0.0 10 1.232611752875911 0.0 0.0 0.0 0.0 11 1.2443494179446721 0.0 0.0 0.0 0.0 12 1.2672389109664628 0.0 0.0 0.0 0.0 13 1.2950975580949038 0.0 0.0 0.0 0.0 14 1.3876807451345965 0.0 0.0 0.0 0.0 15 1.476581527446835 0.0 0.0 0.0 0.0 16 1.512139748096317 0.0 0.0 0.0 0.0 17 1.5566947530231026 0.0 0.0 0.0 0.0 18 1.6466625957961374 0.0 0.0 0.0 0.0 19 1.7022334307740865 0.0 0.0 0.0 0.0 20 1.7619678938245549 0.0 0.0 0.0 0.0 21 1.8201540730691619 0.0 0.0 0.0 1.0461377066631964E-5 22 1.8708289835799272 0.0 0.0 0.0 1.0461377066631964E-5 23 1.9388907027754347 0.0 0.0 0.0 5.2306885333159815E-5 24 2.006628119281877 0.0 0.0 0.0 5.2306885333159815E-5 25 2.076918111792577 0.0 0.0 0.0 5.2306885333159815E-5 26 2.1307418968003984 0.0 0.0 0.0 5.2306885333159815E-5 27 2.180663588162366 0.0 0.0 0.0 5.2306885333159815E-5 28 2.2432749299061583 0.0 0.0 0.0 5.2306885333159815E-5 29 2.3051121297470196 0.0 0.0 0.0 5.2306885333159815E-5 30 2.3804863515121033 0.0 0.0 0.0 5.2306885333159815E-5 31 2.454479671504391 0.0 0.0 0.0 5.2306885333159815E-5 32 2.5612275630923036 0.0 0.0 0.0 6.276826239979177E-5 33 2.618001456432915 0.0 0.0 0.0 6.276826239979177E-5 34 2.695059959905726 0.0 0.0 0.0 6.276826239979177E-5 35 2.743265985428766 0.0 0.0 0.0 6.276826239979177E-5 36 2.8041511999565643 0.0 0.0 0.0 6.276826239979177E-5 37 2.856855617618256 0.0 0.0 0.0 6.276826239979177E-5 38 2.9061705491103593 0.0 0.0 0.0 6.276826239979177E-5 39 2.959847874839248 0.0 0.0 0.0 6.276826239979177E-5 40 3.018462970543587 0.0 0.0 0.0 6.276826239979177E-5 41 3.092037835453209 0.0 0.0 0.0 6.276826239979177E-5 42 3.1917661430294118 0.0 0.0 0.0 6.276826239979177E-5 43 3.23960602035512 0.0 0.0 0.0 6.276826239979177E-5 44 3.2815142968840476 0.0 0.0 0.0 6.276826239979177E-5 45 3.321518602786848 0.0 0.0 0.0 6.276826239979177E-5 46 3.3624435098715124 0.0 0.0 0.0 6.276826239979177E-5 47 3.403807794792975 0.0 0.0 0.0 6.276826239979177E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATTAG 45 7.6397555E-11 53.0 53 GCGACTA 235 0.0 49.61702 19 TCGGGGG 178585 0.0 48.50085 9 TCGGGAT 55525 0.0 48.48987 9 ATCGGGG 507790 0.0 48.48322 8 CTTACGT 170 0.0 48.323532 38 CGGGATT 14800 0.0 47.950676 10 ATCGGGC 101615 0.0 47.93549 8 CGGGGGC 48190 0.0 47.731895 10 CGGGGGG 73035 0.0 47.7098 10 CACGAGA 12290 0.0 47.393818 2 TATAGAG 7515 0.0 47.393215 1 AGAGATC 238530 0.0 47.36182 4 TCGGGGC 129910 0.0 47.327114 9 TAGAGAT 86400 0.0 47.31048 3 GATCGGG 1000815 0.0 47.224262 7 TCGGGGA 134325 0.0 47.188053 9 CTGAGAT 83195 0.0 47.135887 3 TACGGTA 90 0.0 47.11111 29 TGAGATC 380850 0.0 47.106472 4 >>END_MODULE