SRR1528081_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1528081_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1368581
Sequences flagged as poor quality	0
Sequence length	59
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGACATACAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA	2739	0.20013429968704813	No Hit
GGCTATACAGGGGGCCGGGCGCGTGGCTCGCCGTGATCGTATAGTGGTTAGTACTCTGC	2536	0.18530141803809932	No Hit
GCCGATACAGGGAACGGATGCCTGTAAAAAACACGGCGGCTTCTACCTTGGCAGTATCG	1878	0.1372224223484032	No Hit
GCGTATACAGGGCTGGTAGGAATGCAAAACAGGGCTGGGCATGGTCGTTCATGCCTGTA	1646	0.12027055760674742	No Hit
GGGGATACAGGGGCTGTCTTCTTTATCATGCAACTCGTAGGACAGGTTCCGGCAGCGCT	1508	0.11018712082076253	No Hit
ACATATACAGGGGTAGCCCATTTCTCTCAGATCTGTAGATGTCTTCAAGTTTTTGGCCT	1494	0.1091641634656626	No Hit
ACGAATACAGGGGGAGGCCAAGATGGGAAGAATACTTTGAGGCCAGGAATTCAAGACCA	1427	0.10426858183768443	No Hit
GGTGATACAGGGGAAGTATTATTATTCATACTTGTAAATACTTTACAAATATAGTAAAT	1388	0.10141891491990608	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGAGC	65	0.0	53.000004	50
AACGTAT	50	3.6379788E-12	53.000004	33
CTATGAA	50	3.6379788E-12	53.000004	33
TAATAAG	25	1.4788815E-5	53.000004	32
GTCGCGG	35	3.342757E-8	53.000004	43
CATATTC	70	0.0	53.000004	38
GCGACGA	70	0.0	53.000004	44
CATATGT	65	0.0	53.000004	41
TACTTTG	175	0.0	53.000004	33
CAAGTTA	35	3.342757E-8	53.000004	41
CATATAA	70	0.0	53.000004	44
TTCAGGC	200	0.0	53.000004	20
CATGCTT	25	1.4788815E-5	53.000004	42
TTTACCG	70	0.0	53.000004	18
CACGGCG	175	0.0	53.000004	32
CGAAACT	70	0.0	53.000004	48
CGACGGT	50	3.6379788E-12	53.000004	34
CGACGAA	70	0.0	53.000004	45
CCGATAA	50	3.6379788E-12	53.000004	30
CCTAGAC	70	0.0	53.000004	29