##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528079_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2965096 Sequences flagged as poor quality 0 Sequence length 52 %GC 53 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.46967147100802 31.0 31.0 34.0 30.0 34.0 2 31.985303342623645 31.0 31.0 34.0 30.0 34.0 3 32.17059211573588 33.0 31.0 34.0 30.0 34.0 4 35.801697145724795 37.0 35.0 37.0 35.0 37.0 5 35.6347595491006 37.0 35.0 37.0 33.0 37.0 6 35.76624972682166 37.0 35.0 37.0 33.0 37.0 7 35.647344976351526 37.0 35.0 37.0 33.0 37.0 8 35.73619707422626 37.0 35.0 37.0 33.0 37.0 9 37.442978911981264 39.0 37.0 39.0 34.0 39.0 10 37.65024977268864 39.0 37.0 39.0 35.0 39.0 11 37.502374965262504 39.0 37.0 39.0 35.0 39.0 12 37.296973521262046 39.0 37.0 39.0 35.0 39.0 13 37.26652965030475 39.0 37.0 39.0 35.0 39.0 14 37.778693506044995 40.0 38.0 40.0 33.0 40.0 15 37.21071122149165 39.0 37.0 40.0 32.0 40.0 16 36.910842684351536 39.0 36.0 40.0 31.0 40.0 17 36.753169205988605 39.0 36.0 40.0 31.0 40.0 18 36.81783658943926 39.0 36.0 40.0 31.0 40.0 19 37.05443196442881 39.0 36.0 40.0 32.0 40.0 20 37.241431643359945 39.0 36.0 40.0 32.0 40.0 21 37.19073109268638 39.0 36.0 40.0 32.0 40.0 22 37.196823981415776 39.0 36.0 40.0 32.0 40.0 23 37.264087233600534 39.0 36.0 40.0 32.0 40.0 24 37.23905027021048 39.0 36.0 40.0 32.0 40.0 25 37.23524803244145 40.0 36.0 40.0 32.0 40.0 26 36.96134863761578 40.0 36.0 40.0 31.0 40.0 27 36.75663351203469 39.0 35.0 40.0 31.0 40.0 28 36.74195439203317 39.0 35.0 40.0 31.0 40.0 29 36.79497088795776 39.0 35.0 40.0 31.0 40.0 30 36.64231141251413 39.0 35.0 40.0 31.0 40.0 31 36.70098978245561 39.0 35.0 40.0 31.0 40.0 32 36.766901307748554 39.0 35.0 40.0 31.0 40.0 33 36.77735864201362 39.0 35.0 40.0 31.0 40.0 34 36.73796632554224 39.0 35.0 40.0 31.0 40.0 35 36.49782098117565 39.0 35.0 40.0 31.0 40.0 36 36.52101786923593 39.0 35.0 40.0 31.0 40.0 37 36.40020154490782 38.0 35.0 40.0 31.0 40.0 38 36.202723284507485 38.0 35.0 40.0 30.0 40.0 39 36.02940714229826 38.0 35.0 40.0 30.0 40.0 40 35.87536086521313 38.0 35.0 40.0 30.0 40.0 41 35.72140868288919 38.0 35.0 40.0 30.0 40.0 42 35.506044998205795 38.0 34.0 40.0 29.0 40.0 43 35.38262066388407 37.0 34.0 40.0 29.0 40.0 44 35.10070938681243 37.0 34.0 40.0 28.0 40.0 45 34.96685975766046 37.0 34.0 40.0 27.0 40.0 46 34.7918671098676 36.0 33.0 40.0 27.0 40.0 47 34.62470253914207 36.0 33.0 40.0 27.0 40.0 48 34.41718784147292 36.0 33.0 39.0 26.0 40.0 49 34.10586200244444 35.0 33.0 39.0 26.0 40.0 50 33.90751597924654 35.0 33.0 39.0 24.0 40.0 51 33.72661323613131 35.0 33.0 39.0 24.0 40.0 52 32.449904151501336 35.0 31.0 38.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 1.0 13 7.0 14 5.0 15 16.0 16 44.0 17 138.0 18 392.0 19 873.0 20 1737.0 21 3149.0 22 5214.0 23 8240.0 24 12254.0 25 17612.0 26 25009.0 27 33403.0 28 43903.0 29 56664.0 30 72124.0 31 89419.0 32 110405.0 33 139992.0 34 196534.0 35 291739.0 36 307187.0 37 515710.0 38 833404.0 39 199917.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.844799628747264 21.36163550859736 33.5974956628723 16.196069199783075 2 19.157457296492257 24.25816904410515 35.10520401363058 21.479169645772007 3 21.264235626772287 22.300188594231013 35.17983903387951 21.25573674511719 4 20.956859406912965 19.92036682792058 34.71607664642224 24.406697118744216 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 0.0 0.0 0.0 100.0 8 0.0 0.0 100.0 0.0 9 0.0 0.0 0.0 100.0 10 0.0 0.0 100.0 0.0 11 99.41431913165712 0.3561436122135675 0.17240588500338608 0.05713137112592644 12 99.51826180332777 0.2777313112290462 0.14417745664895842 0.05982942879421105 13 98.11567652447003 0.9719415492786743 0.28498234121256105 0.6273995850387306 14 60.45757034510856 22.66759659720967 8.727272236716788 8.147560820964987 15 33.05936806093294 24.88796315532448 20.282176361237543 21.77049242250504 16 31.07514900023473 17.716289792978035 27.985704341444595 23.22285686534264 17 23.151628142899927 19.24737006828784 28.943582265127333 28.6574195236849 18 21.553636037416663 20.238602729894748 33.35956070225045 24.848200530438138 19 20.542775006272983 21.31374498498531 30.6942169831938 27.44926302554791 20 25.170618421798146 18.753321983504076 26.14026662205878 29.935792972638996 21 29.075247479339623 18.004105094742297 22.697646214490188 30.223001211427892 22 29.089749539306652 23.01210483572876 21.0216802423935 26.876465382571084 23 28.91818679732461 21.169803608382328 20.459910910135793 29.452098684157274 24 26.007522184779177 21.76219589517506 21.80620796088896 30.424073959156807 25 30.057947533570584 19.965930276793735 22.728707603396316 27.247414586239366 26 30.95009402730974 20.855547341468878 20.415460410050805 27.77889822117058 27 28.526260195285413 23.248488413191343 22.45043668063361 25.774814710889633 28 31.2905551793264 22.91352455367381 19.8665405774383 25.929379689561483 29 29.203540121466553 22.40409754018082 19.580546464600136 28.811815873752483 30 28.167283622520145 25.212134784168878 20.12855570274959 26.492025890561383 31 27.715999751778696 23.27567134419931 22.447940977290447 26.560387926731543 32 27.83009386542628 25.93986838874694 19.781551760887336 26.448485984939442 33 28.29517155599684 27.01845066736456 20.777168766205207 23.90920901043339 34 27.87029492468372 25.53704837887205 19.240962181325663 27.35169451511857 35 27.390647722704426 26.313448198641797 20.697778419315934 25.598125659337846 36 30.809086788421013 26.733299697547736 19.74705034845415 22.710563165577103 37 29.037811929192177 25.49789281696107 20.22447165285711 25.23982360098965 38 26.958452609966088 27.653033830945102 21.662637567215363 23.725875991873448 39 29.61114918370265 26.325892989636763 22.093146393911024 21.969811432749566 40 28.68170204269946 27.92159174610198 19.239545701049813 24.157160510148746 41 30.18543075839703 27.74554348324641 18.600038582224656 23.468987176131904 42 30.50265488874559 28.253621467905255 18.093781786491906 23.149941856857247 43 30.021490029327886 27.931540833753782 17.42719291382134 24.61977622309699 44 27.03264919584391 27.28063442128012 19.500009443201836 26.186706939674124 45 25.94961512207362 28.07362729570982 20.397383423673297 25.579374158543267 46 25.94877197905228 26.102628717586207 21.778687772672452 26.169911530689056 47 27.247987923493877 23.850694884752464 22.863812841135665 26.03750435061799 48 26.405249610805182 25.70705973769483 21.29904057069316 26.588650080806826 49 28.072480621200796 24.341707654659412 20.57373521801655 27.01207650612324 50 26.236654732258245 27.93400281137609 20.56928342286388 25.26005903350178 51 27.122764321964617 25.43182412980895 21.097495662872298 26.347915885354134 52 28.87235354268462 24.790462096336846 20.1674751846146 26.169709176363938 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 2.0 6 3.0 7 6.5 8 10.0 9 536.5 10 1063.0 11 1506.5 12 1950.0 13 3076.5 14 4546.5 15 4890.0 16 6127.5 17 7365.0 18 7402.0 19 7439.0 20 8934.0 21 10429.0 22 14194.5 23 17960.0 24 23755.0 25 29550.0 26 37241.5 27 44933.0 28 42814.5 29 40696.0 30 36211.0 31 31726.0 32 35035.0 33 38344.0 34 34894.0 35 31444.0 36 38342.0 37 45240.0 38 46342.5 39 50708.5 40 53972.0 41 59636.5 42 65301.0 43 69519.5 44 73738.0 45 80655.5 46 87573.0 47 100920.0 48 114267.0 49 123047.5 50 131828.0 51 153642.0 52 175456.0 53 191696.0 54 207936.0 55 234899.5 56 261863.0 57 285120.5 58 308378.0 59 301451.0 60 294524.0 61 271228.5 62 247933.0 63 226897.5 64 171248.0 65 136634.0 66 114509.5 67 92385.0 68 76055.5 69 59726.0 70 53394.0 71 47062.0 72 31457.0 73 15852.0 74 12127.0 75 8402.0 76 7366.0 77 6330.0 78 4056.0 79 1782.0 80 2243.5 81 2705.0 82 1633.0 83 561.0 84 421.0 85 281.0 86 164.0 87 47.0 88 27.0 89 3.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2965096.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 10.163885410928652 #Duplication Level Percentage of deduplicated Percentage of total 1 80.2130827431573 8.152765814587893 2 8.108477437497577 1.6482727106365151 3 2.997832733616499 0.9140888515682727 4 1.7072376198089663 0.6940867014785963 5 1.0434760299820935 0.5302885398894374 6 0.7686895512904035 0.4687723509536294 7 0.5541494300501758 0.3942617915292987 8 0.4358193478855786 0.35436943294197365 9 0.3591912515159439 0.32857008489144957 >10 2.4199645890230363 5.058671493220446 >50 0.28745796668391843 1.9952878119348987 >100 0.42578866217301176 11.739122978225073 >500 0.43860955691356124 32.4587383037775 >1k 0.24022308040188892 35.262703134365005 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TAAGATCTCTGGGGCGAGTCCCGCTGGGCCGCAGCCGGTGGCCGGCTCGCCG 4266 0.1438739251612764 No Hit GTCCATCTCTGGGGGCCGCCCATCCCTCTTTGTGTGCTTGGGACGCCGCGGA 3755 0.1266400818051085 No Hit AATTATCTCTGGGGCTCTTCGCCATCTTTACCCCGGCAGGCCGACATCTATC 3662 0.12350358976572766 No Hit GGGCATCTCTGGGATCTTTACCCCGGCAGGCCGACATCTATCACCATGAAGG 3464 0.11682589703672326 No Hit TATAATCTCTGGGTCTGACCCTGATCTCAGCCTATTCCTAAGCTTGGCCCTC 3396 0.11453254801868135 No Hit AGCCATCTCTGGGGGGGCCGCCTCCGTCTCCTTGAGGAGATGCACCCAGGGG 3388 0.11426274225185289 No Hit AGAAATCTCTGGGGGCGGACACCAGGACTTCAAGATGGCGTCACTCGTGCCG 3281 0.11065409012052224 No Hit ACGGATCTCTGGGGCTCTCTTTCCCGCCTTGCAAGATGGCGGGTGAAAAAGC 3277 0.110519187237108 No Hit TCCTATCTCTGGGATCGAGCCGCTGCCGCTCCCCTGGCATAGCCTGCTTCCT 3234 0.10906898124040502 No Hit GTCGATCTCTGGGTTGATACCACCCAAAAAAAAAAAAAAAAAAAAAAAAAAA 3223 0.10869799831101588 No Hit CAGCATCTCTGGGGCTCTGACCCTGATCTCAGCCTATTCCTAAGCTTGGCCC 3078 0.10380776878725007 No Hit CATCATCTCTGGGAGACGCTAGCTGTAGCTGGCAGGCGGTTGTACGTGCTCC 3078 0.10380776878725007 No Hit CTCTATCTCTGGGTCGAGTTGCCCCTTTGCCCGATCCCGGAAGATACGCTCT 3006 0.10137951688579391 No Hit AGATATCTCTGGGGCCTTTGCGGGCGCCTCTGGATCCCGCGGCCTCTTCTGG 2976 0.10036774526018719 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.005328663894862089 0.0 0.0 0.0 0.0 12 0.013422836899715894 0.0 0.0 0.0 0.0 13 0.016930311868485877 0.0 0.0 0.0 0.0 14 0.055917245175198374 0.0 0.0 0.0 0.0 15 0.09223984653447982 0.0 0.0 0.0 0.0 16 0.1171968799661124 0.0 0.0 0.0 0.0 17 0.13952330717116748 0.0 0.0 0.0 0.0 18 0.17486786262569576 0.0 0.0 0.0 0.0 19 0.2095379036631529 0.0 0.0 0.0 0.0 20 0.24032948680245092 0.0 0.0 0.0 0.0 21 0.2777313112290462 0.0 0.0 0.0 0.0 22 0.32194573126806014 0.0 0.0 0.0 0.0 23 0.3529396687324795 0.0 0.0 0.0 0.0 24 0.388722658558104 0.0 0.0 0.0 0.0 25 0.4234264253164147 0.0 0.0 0.0 0.0 26 0.4667977023340897 0.0 0.0 0.0 0.0 27 0.5111807509773714 0.0 0.0 0.0 3.372572085355752E-5 28 0.5555300738997996 0.0 0.0 0.0 3.372572085355752E-5 29 0.609153970056956 0.0 0.0 0.0 3.372572085355752E-5 30 0.6842611503978286 0.0 0.0 0.0 3.372572085355752E-5 31 0.7480027628110523 0.0 0.0 0.0 3.372572085355752E-5 32 0.7996705671587024 0.0 0.0 0.0 3.372572085355752E-5 33 0.839568094928461 0.0 0.0 0.0 3.372572085355752E-5 34 0.8814554402285795 0.0 0.0 0.0 3.372572085355752E-5 35 0.9252988773382043 0.0 0.0 0.0 3.372572085355752E-5 36 0.9704913432819713 0.0 0.0 0.0 3.372572085355752E-5 37 1.0150092948086673 0.0 0.0 0.0 3.372572085355752E-5 38 1.0594260691728026 0.0 0.0 0.0 3.372572085355752E-5 39 1.1090366045483857 0.0 0.0 0.0 3.372572085355752E-5 40 1.1615138261965212 0.0 0.0 0.0 3.372572085355752E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACGG 35 1.02030754E-7 46.000004 36 CTAGATT 70 0.0 46.000004 46 ACAACCC 105 0.0 46.000004 28 GACAGTC 75 0.0 46.000004 40 CCTTACG 75 0.0 46.000004 39 CACGGTT 75 0.0 46.000004 38 CGAAAGT 35 1.02030754E-7 46.000004 44 TTAGCCT 75 0.0 46.000004 25 TAGACGA 70 0.0 46.000004 46 GCGAACC 115 0.0 46.000004 19 AACCAAT 35 1.02030754E-7 46.000004 31 ATAGCCG 105 0.0 46.000004 14 ACTTCTA 75 0.0 46.000004 27 TAAACCC 140 0.0 46.000004 26 ATATGTT 35 1.02030754E-7 46.000004 37 GTCTAGT 140 0.0 46.000004 32 AAGGTAC 75 0.0 46.000004 27 TACGGCA 75 0.0 46.000004 42 TAGCCGA 35 1.02030754E-7 46.000004 20 ATGTACC 75 0.0 46.000004 28 >>END_MODULE