##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528069_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5044197 Sequences flagged as poor quality 0 Sequence length 59 %GC 53 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.630841341049923 31.0 31.0 31.0 28.0 33.0 2 31.2495041331653 31.0 31.0 33.0 30.0 34.0 3 31.595393280635154 31.0 31.0 34.0 30.0 34.0 4 35.464203519410525 37.0 35.0 37.0 33.0 37.0 5 34.948780945708506 35.0 35.0 37.0 32.0 37.0 6 35.174393664640775 36.0 35.0 37.0 33.0 37.0 7 35.46102481723057 37.0 35.0 37.0 33.0 37.0 8 35.602635662326435 37.0 35.0 37.0 33.0 37.0 9 36.51155674530555 38.0 35.0 39.0 32.0 39.0 10 35.64012428539171 37.0 35.0 39.0 32.0 39.0 11 36.5119807969435 37.0 35.0 39.0 33.0 39.0 12 36.86272859684108 39.0 37.0 39.0 33.0 39.0 13 36.890961237239544 39.0 37.0 39.0 32.0 39.0 14 37.24037146051195 39.0 37.0 40.0 32.0 40.0 15 36.399802981525106 38.0 36.0 40.0 30.0 40.0 16 35.90983639219483 38.0 35.0 40.0 30.0 40.0 17 36.05058386894881 38.0 35.0 40.0 30.0 40.0 18 36.40953535319893 38.0 35.0 40.0 30.0 40.0 19 36.62509870252887 39.0 36.0 40.0 31.0 40.0 20 36.66762380612811 39.0 35.0 40.0 31.0 40.0 21 36.542529762418084 39.0 35.0 40.0 30.0 40.0 22 36.53801288887012 39.0 35.0 40.0 30.0 40.0 23 36.521082146474455 39.0 35.0 40.0 30.0 40.0 24 36.458823277520686 39.0 35.0 40.0 30.0 40.0 25 36.46947135490545 39.0 35.0 40.0 30.0 40.0 26 36.12198512468883 38.0 35.0 40.0 30.0 40.0 27 35.92235077258085 38.0 35.0 40.0 29.0 40.0 28 35.843109815100405 38.0 35.0 40.0 29.0 40.0 29 35.81549412126449 38.0 35.0 40.0 29.0 40.0 30 35.73107691868498 38.0 35.0 40.0 28.0 40.0 31 35.690290050130876 38.0 34.0 40.0 28.0 40.0 32 35.65532551563708 38.0 34.0 40.0 28.0 40.0 33 35.41301717597469 38.0 34.0 40.0 27.0 40.0 34 35.28884260468019 38.0 34.0 40.0 27.0 40.0 35 35.190704486759735 38.0 34.0 40.0 26.0 40.0 36 35.02403772096926 38.0 33.0 40.0 26.0 40.0 37 34.98993258986515 38.0 33.0 40.0 26.0 40.0 38 34.86366690277957 37.0 33.0 40.0 26.0 40.0 39 34.631890070907225 37.0 33.0 40.0 26.0 40.0 40 34.509629580288 37.0 33.0 40.0 25.0 40.0 41 34.282417399637644 37.0 33.0 40.0 24.0 40.0 42 34.18279678608904 36.0 33.0 39.0 24.0 40.0 43 33.99747412720003 36.0 33.0 39.0 24.0 40.0 44 33.8048395017086 36.0 32.0 39.0 23.0 40.0 45 33.704956210076645 36.0 32.0 39.0 23.0 40.0 46 33.55541427109211 35.0 32.0 39.0 23.0 40.0 47 33.24242788297126 35.0 32.0 39.0 23.0 40.0 48 33.101706178406594 35.0 32.0 38.0 23.0 40.0 49 32.832403254670666 35.0 31.0 38.0 22.0 40.0 50 32.50721948409232 35.0 31.0 38.0 21.0 40.0 51 32.334421514465035 35.0 31.0 38.0 21.0 40.0 52 31.728577809312366 34.0 30.0 37.0 19.0 40.0 53 31.710938529958288 34.0 30.0 37.0 20.0 39.0 54 31.7009412994774 34.0 30.0 37.0 20.0 39.0 55 31.66688533378058 34.0 30.0 37.0 20.0 39.0 56 31.525701910532042 34.0 30.0 36.0 20.0 39.0 57 31.247678074428894 34.0 30.0 36.0 19.0 39.0 58 31.040212545227714 34.0 29.0 36.0 18.0 39.0 59 30.20440022465419 33.0 28.0 35.0 17.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 5.0 13 12.0 14 29.0 15 154.0 16 511.0 17 1478.0 18 3253.0 19 6222.0 20 11112.0 21 16927.0 22 24473.0 23 34845.0 24 47717.0 25 62490.0 26 80772.0 27 102290.0 28 124429.0 29 149441.0 30 180389.0 31 221184.0 32 272060.0 33 341511.0 34 447670.0 35 551807.0 36 716515.0 37 858781.0 38 733417.0 39 54703.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.58699055568211 19.913159616882528 30.663473294163566 16.836376533271796 2 29.852997414652915 20.51589182579507 33.32365884996165 16.307451909590366 3 22.646498540798465 21.38106422092555 36.978115644571375 18.99432159370461 4 20.90665769001488 22.228671877803343 38.42274597919154 18.44192445299024 5 0.0 0.0 100.0 0.0 6 0.0 100.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 0.0 0.0 100.0 0.0 9 100.0 0.0 0.0 0.0 10 0.0 0.0 100.0 0.0 11 99.25068350819764 0.690218879238856 0.042722359971269955 0.016375252592236187 12 99.38594785255215 0.47234475576588303 0.09795414413830389 0.04375324754366255 13 97.55865998096426 1.6189098086375295 0.32940822890144855 0.4930219814967576 14 62.721578875686255 24.400553745224464 5.36339084298254 7.514476536106739 15 31.870840889045372 27.982233842175475 17.673100396356446 22.473824872422707 16 27.658396371117146 18.10482421681786 29.635123291179944 24.60165612088505 17 22.09812582656863 17.860166841223688 30.42930321714239 29.612404115065296 18 22.258508143119705 18.91387271353597 31.480868015265862 27.346751128078463 19 23.816833482118167 18.613170738573455 30.265550691220028 27.304445088088354 20 27.397423217213763 18.680614575521137 25.923809082000567 27.998153125264537 21 29.03465110502227 18.971047324281745 21.683748671988823 30.310552898707165 22 29.05267181277813 20.83116500009813 23.25065813250355 26.865505054620193 23 30.005846322021128 19.770956606175375 20.66654018469144 29.55665688711206 24 28.027315348706644 21.20767686115352 22.02681616122447 28.738191628915366 25 30.96235139111339 18.99721600881171 22.739813690861002 27.3006189092139 26 30.13589675423065 20.448408339325365 21.180219567158062 28.235475339285916 27 30.01113953321014 21.501420345002387 20.845280229935508 27.642159891851964 28 29.729033184072705 21.304679416763463 20.125998251059585 28.840289148104247 29 28.78743633525812 21.593684782731522 20.59063117479353 29.028247707216824 30 29.556815485200122 20.52039204654378 21.217133272154122 28.705659196101973 31 29.9025791419328 21.100999822171893 21.088311975127063 27.908109060768243 32 30.494487031335215 22.47802772175631 19.452570944394125 27.57491430251435 33 30.55552747047746 23.00312616656328 19.808484878762666 26.63286148419659 34 29.121424083952313 22.278630275542373 20.50683191001462 28.0931137304907 35 29.69178245813952 24.199530668607906 19.990833030510107 26.117853842742463 36 32.10844064972086 22.714953440557537 19.415141795611866 25.76146411410974 37 31.38818725755556 23.036292991728914 20.33469351018606 25.24082624052946 38 30.010247418964802 24.29611690423669 22.04505494135142 23.64858073544709 39 31.07977345056111 22.87577190185078 22.59465679076372 23.449797856824386 40 30.348378542709575 24.825259600289204 20.292050449258824 24.5343114077424 41 32.024720683985976 23.599811823368515 19.660175841665183 24.715291650980326 42 31.311049112475185 24.702722752501536 19.613885024712555 24.37234311031072 43 31.401073352210474 23.306008865236628 19.86534229333232 25.427575489220583 44 30.74739150750853 23.825794274093578 21.360862789458857 24.065951428939037 45 28.641486444720538 24.228157623502806 20.809556010599902 26.32079992117675 46 28.59721775339068 23.19078735426075 21.054649530936242 27.157345361412332 47 28.87383264372902 21.68860573843567 23.596917408261415 25.84064420957389 48 28.639424669575753 21.639698053030045 21.972397192258747 27.74848008513545 49 29.995577095819215 20.932429879324697 22.119596042739804 26.952396982116284 50 27.47186519479711 22.276330603265496 22.485006037630964 27.76679816430643 51 28.40325229169281 22.99981543147502 21.6616242387044 26.935308038127776 52 29.221479652757417 22.56376981311396 22.159186090471884 26.055564443656742 53 26.731608618775198 24.124434473911307 22.36690993630899 26.777046971004502 54 26.364632467764444 23.862311483869483 22.502590600644663 27.27046544772141 55 26.631731472819165 23.76249381219647 21.40582534742398 28.199949367560386 56 28.53936910077065 23.370023018530006 20.445850945155396 27.644756935543953 57 28.915464641844878 22.721892106910175 21.455367425181848 26.9072758260631 58 27.84242962755023 23.213942675117565 21.19782395493277 27.74580374239943 59 29.226713389663413 22.80434328794058 20.88709065090043 27.081852671495582 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 1.0 2 2.0 3 4.0 4 89.5 5 173.0 6 675.5 7 1178.0 8 1685.0 9 2799.5 10 3407.0 11 3966.0 12 4525.0 13 4317.0 14 4177.5 15 4246.0 16 4487.0 17 4728.0 18 5469.0 19 8029.0 20 9848.0 21 12832.0 22 15816.0 23 18785.0 24 21754.0 25 26408.0 26 34983.5 27 38905.0 28 39661.0 29 40417.0 30 42097.0 31 47116.5 32 50456.0 33 51853.5 34 53251.0 35 52793.5 36 58259.5 37 64183.0 38 70386.5 39 76590.0 40 83051.5 41 89513.0 42 104040.5 43 126076.0 44 133584.0 45 143164.5 46 152745.0 47 170424.0 48 206999.0 49 225895.0 50 245111.0 51 264327.0 52 302452.5 53 369467.5 54 398357.0 55 425289.0 56 452221.0 57 453316.0 58 431000.5 59 407590.0 60 381223.0 61 354856.0 62 321531.5 63 288207.0 64 244230.0 65 173454.5 66 146656.0 67 133874.0 68 121092.0 69 95855.5 70 68342.0 71 66065.0 72 46657.5 73 27250.0 74 16972.0 75 5396.5 76 4099.0 77 3115.0 78 2131.0 79 1438.0 80 745.0 81 544.5 82 220.5 83 97.0 84 57.0 85 17.0 86 11.5 87 4.0 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 5044197.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.418253147721146 #Duplication Level Percentage of deduplicated Percentage of total 1 82.43735538466515 11.0616530338009 2 7.533027683903748 2.02160144862824 3 2.9689221043895766 1.1951324511769297 4 1.6156157009646974 0.8671496185990903 5 0.9989465865212422 0.6702059089496976 6 0.6657414119475669 0.5359852077860255 7 0.4600822270095011 0.43214498535465545 8 0.33124529888556187 0.3555786619551218 9 0.22947601189805922 0.27712504970798657 >10 1.287906301063287 3.363826083790954 >50 0.1803903799997202 1.737911368069051 >100 0.8817614659897388 34.95913074914391 >500 0.3443127433201021 30.9912179798861 >1k 0.06521669944219186 11.531337453151396 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0020617751447851856 0.0 0.0 0.0 0.0 12 0.008029028208057695 0.0 0.0 0.0 0.0 13 0.016950170661455134 0.0 0.0 0.0 0.0 14 0.06351853426818976 0.0 0.0 0.0 0.0 15 0.09823169079240958 0.0 0.0 0.0 0.0 16 0.11399237579341172 0.0 0.0 0.0 0.0 17 0.12834550276287782 0.0 0.0 0.0 0.0 18 0.1449586524872046 0.0 0.0 0.0 0.0 19 0.16206742123672013 0.0 0.0 0.0 0.0 20 0.18068287182280945 0.0 0.0 0.0 0.0 21 0.20015078713222342 0.0 0.0 0.0 0.0 22 0.22336558227206432 0.0 0.0 0.0 0.0 23 0.24166383668203284 0.0 0.0 0.0 0.0 24 0.26089385485935623 0.0 0.0 0.0 0.0 25 0.2838707528671065 0.0 0.0 0.0 0.0 26 0.3114271706676008 0.0 0.0 0.0 0.0 27 0.33418599630426804 0.0 0.0 0.0 0.0 28 0.3582136066454185 0.0 0.0 0.0 0.0 29 0.3916976279871702 0.0 0.0 0.0 0.0 30 0.42995941673174143 0.0 0.0 0.0 0.0 31 0.46217465336901 0.0 0.0 0.0 0.0 32 0.48368451906220156 0.0 0.0 0.0 0.0 33 0.5030533105665778 0.0 0.0 0.0 0.0 34 0.5216885859136746 0.0 0.0 0.0 0.0 35 0.5407600060029376 0.0 0.0 0.0 0.0 36 0.5597917765701855 0.0 0.0 0.0 0.0 37 0.5782089795461993 0.0 0.0 0.0 0.0 38 0.5975975958115831 0.0 0.0 0.0 0.0 39 0.6195634310079483 0.0 0.0 0.0 0.0 40 0.6418068128584193 0.0 0.0 0.0 0.0 41 0.6605610367715614 0.0 0.0 0.0 0.0 42 0.6810003653703454 0.0 0.0 0.0 0.0 43 0.6994373931073667 0.0 0.0 0.0 0.0 44 0.7197577731401054 0.0 0.0 0.0 0.0 45 0.7391860389275042 0.0 0.0 0.0 0.0 46 0.7578411390356087 0.0 0.0 0.0 0.0 47 0.7749102582631091 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAGTTA 65 0.0 53.0 32 ACGTTTA 165 0.0 53.0 29 CCGATTA 50 3.6379788E-12 53.0 19 ACGTTAA 20 3.1392663E-4 53.0 25 CCGATAC 50 3.6379788E-12 53.0 42 CGCATAA 30 7.01526E-7 53.0 33 CATTACG 55 0.0 53.0 16 TTATACG 55 0.0 53.0 47 CGGATTA 50 3.6379788E-12 53.0 42 ACTACGT 25 1.4794534E-5 53.0 39 TTAGTAC 20 3.1392663E-4 53.0 50 TTACGCG 40 1.6025297E-9 53.0 25 TACTACG 20 3.1392663E-4 53.0 15 ACCGTTC 15 0.0066975756 53.0 24 TTACACG 50 3.6379788E-12 53.0 45 CACGATA 85 0.0 52.999996 20 CGTATAT 1755 0.0 52.54701 1 CGATATT 4060 0.0 52.543102 2 CGTTTAT 3055 0.0 52.306053 1 CCGTTAT 1450 0.0 51.172413 1 >>END_MODULE