##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528067_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3380127 Sequences flagged as poor quality 0 Sequence length 52 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.806879741500836 31.0 31.0 34.0 27.0 34.0 2 31.539399555105472 31.0 31.0 34.0 30.0 34.0 3 31.72118799086543 31.0 31.0 34.0 30.0 34.0 4 35.49905787563603 37.0 35.0 37.0 33.0 37.0 5 35.48153190693723 37.0 35.0 37.0 33.0 37.0 6 35.45184396917631 37.0 35.0 37.0 33.0 37.0 7 35.366185057543696 37.0 35.0 37.0 33.0 37.0 8 35.404088958787646 37.0 35.0 37.0 33.0 37.0 9 37.22135115041535 39.0 37.0 39.0 34.0 39.0 10 37.3804590774252 39.0 37.0 39.0 34.0 39.0 11 37.773354078116 39.0 37.0 39.0 35.0 39.0 12 37.674571103393454 39.0 37.0 39.0 35.0 39.0 13 37.50190273915744 39.0 37.0 39.0 35.0 39.0 14 37.8090397195135 40.0 38.0 40.0 33.0 40.0 15 36.90644641458738 39.0 36.0 40.0 31.0 40.0 16 36.39470410431324 38.0 35.0 40.0 31.0 40.0 17 36.56205107086213 38.0 36.0 40.0 31.0 40.0 18 35.95482063247919 38.0 34.0 40.0 29.0 40.0 19 36.71433055621875 39.0 36.0 40.0 31.0 40.0 20 36.96101329920444 39.0 36.0 40.0 32.0 40.0 21 37.09021968701176 39.0 36.0 40.0 32.0 40.0 22 37.18861598987257 39.0 36.0 40.0 32.0 40.0 23 37.184483896610985 39.0 36.0 40.0 32.0 40.0 24 37.325023882238746 40.0 37.0 40.0 32.0 40.0 25 37.47093585536875 40.0 37.0 40.0 32.0 40.0 26 37.096956120287786 40.0 36.0 40.0 31.0 40.0 27 36.746589699144444 39.0 36.0 40.0 31.0 40.0 28 36.539559904110114 39.0 36.0 40.0 30.0 40.0 29 36.36860745173184 38.0 35.0 40.0 30.0 40.0 30 35.80386890788423 38.0 35.0 40.0 29.0 40.0 31 35.73113495439669 38.0 35.0 40.0 29.0 40.0 32 35.610138908981824 38.0 35.0 40.0 29.0 40.0 33 35.56939901962264 38.0 35.0 40.0 29.0 40.0 34 35.32976512420983 38.0 35.0 40.0 27.0 40.0 35 35.18282389981205 38.0 34.0 40.0 25.0 40.0 36 34.94138119662368 38.0 34.0 40.0 25.0 40.0 37 34.77101836706136 38.0 34.0 40.0 24.0 40.0 38 34.533691189709735 38.0 33.0 40.0 22.0 40.0 39 34.12981731159805 38.0 33.0 40.0 20.0 40.0 40 33.65392720451036 38.0 33.0 40.0 15.0 40.0 41 33.15655772697298 37.0 32.0 40.0 15.0 40.0 42 32.46373612589113 37.0 31.0 40.0 10.0 40.0 43 31.725742257613398 35.0 30.0 39.0 10.0 40.0 44 31.000349691002736 35.0 29.0 39.0 9.0 40.0 45 30.519800291527506 35.0 27.0 39.0 9.0 40.0 46 30.17124622832219 35.0 26.0 38.0 9.0 40.0 47 29.77317420321781 35.0 24.0 38.0 8.0 40.0 48 29.239864655972987 35.0 23.0 38.0 8.0 40.0 49 28.713404555509303 34.0 20.0 38.0 8.0 40.0 50 28.30636274909197 34.0 20.0 37.0 8.0 40.0 51 27.918006335264916 33.0 18.0 37.0 8.0 40.0 52 27.009479525473452 33.0 15.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 6.0 14 15.0 15 27.0 16 130.0 17 429.0 18 1132.0 19 2640.0 20 5281.0 21 9896.0 22 16003.0 23 24447.0 24 35354.0 25 49031.0 26 66943.0 27 87446.0 28 114017.0 29 143421.0 30 169848.0 31 175467.0 32 165143.0 33 172141.0 34 205534.0 35 263055.0 36 347350.0 37 527226.0 38 685894.0 39 112247.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.637347945802034 24.713450115927596 39.16625026219429 6.482951676076077 2 19.065555820831584 22.43835808536188 39.120749013276715 19.375337080529814 3 22.601310542473698 23.562102844064736 33.586903687346656 20.249682926114907 4 26.57361690847711 27.771648816745643 35.972553693988424 9.682180580788827 5 0.0 0.0 0.0 100.0 6 0.0 0.0 100.0 0.0 7 0.0 0.0 0.0 100.0 8 0.0 0.0 0.0 100.0 9 0.0 100.0 0.0 0.0 10 0.0 0.0 100.0 0.0 11 99.21860924160542 0.5993561780370974 0.1049073008203538 0.07712727953712982 12 98.88924291897908 0.8193183273882904 0.1748750860544589 0.11656366757817088 13 93.60760705145103 5.2747426354098526 0.6997370217154563 0.41791329142366546 14 41.01011589209518 50.14699151836602 5.4671318562882405 3.3757607332505555 15 41.07804233391231 42.725228963290434 11.185289783490383 5.011438919306878 16 27.13989740622172 58.69214381589805 8.131055430757483 6.036903347122756 17 40.7501552456461 29.430787659753616 14.908848099494488 14.910208995105807 18 12.426041980079447 35.98687268259447 39.802676053296224 11.784409284029861 19 21.276271572044482 38.86540357803124 19.446961608247264 20.411363241677012 20 22.587967848545336 33.476523219393826 24.515173542295894 19.42033538976494 21 25.79317286007301 38.049102888737615 19.807421437123516 16.350302814065863 22 24.660907711455813 40.08106795987251 17.73045805675349 17.527566271918186 23 9.108503911243572 31.119984544959404 20.785875796974494 38.98563574682253 24 11.537229222452293 36.7711331556477 35.0245419772689 16.667095644631104 25 13.073118258574306 28.14409044393894 14.718086036412242 44.06470526107451 26 11.996738584082788 35.606324851107665 6.788147309257907 45.60878925555164 27 12.460981495665695 64.44530042806083 12.395717675696801 10.698000400576664 28 16.242525798586858 38.512665352514865 37.345016918003374 7.899791930894905 29 45.16081792193015 32.42830816711916 9.825843821844565 12.58503008910612 30 50.353965990035285 32.28491118824825 9.454408074016154 7.906714747700308 31 40.77130829699594 34.562991272221424 11.630983096197273 13.034717334585357 32 25.819148215436876 54.56945848484391 11.200703405522928 8.410689894196283 33 22.278216173534307 55.26168099600991 10.92621667765738 11.5338861527984 34 14.731665407838227 62.9641430632636 11.768285629504453 10.535905899393722 35 18.58152075351015 55.572142703513805 12.120668838774401 13.725667704201646 36 11.150320683216933 56.180433457086075 18.321560107061067 14.347685752635922 37 12.4976960924841 59.21348517378193 14.89973601583609 13.389082717897876 38 13.496475132443248 55.928786107740926 15.674174372738065 14.900564387077765 39 16.26503974554802 55.91266245321551 13.720519968628398 14.101777832608065 40 16.74942982911589 55.950767530332435 14.012136230384243 13.287666410167429 41 16.157706500377056 51.88423393558881 13.641854285356732 18.3162052786774 42 17.847051309018862 51.66563268184894 17.373430051592738 13.113885957539464 43 18.24250982285577 50.740992868019454 11.215406995062612 19.801090314062165 44 17.80338431070785 51.5392173134323 11.1339011818195 19.523497194040342 45 17.58528599665042 57.08859460014373 13.947996628529047 11.37812277467681 46 18.466613828415323 51.67643109267787 19.208716122204876 10.648238956701924 47 25.830952505630705 51.4853140133492 12.119929221594337 10.563804259425755 48 26.34365513485144 51.9150020102795 11.276085188515106 10.465257666353956 49 23.840021395645785 53.45145315545836 11.964402520970365 10.74412292792549 50 19.709052352174933 57.2258971334509 12.297407760122622 10.767642754251542 51 18.414456024877172 57.69694452309041 12.083392132899148 11.805207319133276 52 21.04255254314409 55.0094715376079 11.639237223926793 12.308738695321212 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 6.5 6 13.0 7 30.0 8 47.0 9 81.0 10 115.0 11 752.0 12 1389.0 13 3892.5 14 11150.0 15 15904.0 16 18655.5 17 21407.0 18 21830.0 19 22253.0 20 25052.5 21 27852.0 22 34975.0 23 42098.0 24 52106.0 25 62114.0 26 76955.5 27 91797.0 28 111455.0 29 131113.0 30 160865.5 31 190618.0 32 220791.0 33 250964.0 34 259452.0 35 267940.0 36 244723.0 37 221506.0 38 189366.5 39 138246.5 40 119266.0 41 116060.5 42 112855.0 43 114666.5 44 116478.0 45 126708.0 46 136938.0 47 158760.0 48 180582.0 49 217286.5 50 253991.0 51 266457.0 52 278923.0 53 275839.0 54 272755.0 55 233236.0 56 193717.0 57 152652.0 58 111587.0 59 82105.5 60 52624.0 61 36765.0 62 20906.0 63 15202.5 64 7745.5 65 5992.0 66 3609.0 67 1226.0 68 1172.5 69 1119.0 70 751.0 71 383.0 72 332.5 73 282.0 74 205.0 75 128.0 76 91.0 77 54.0 78 40.5 79 27.0 80 17.5 81 8.0 82 18.0 83 28.0 84 16.5 85 5.0 86 3.0 87 1.0 88 0.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3380127.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.45423208026297 #Duplication Level Percentage of deduplicated Percentage of total 1 84.57569618615233 36.75171930422875 2 6.828526792430342 5.934567760091235 3 2.0907239800572053 2.7255241513553066 4 1.0241478017260233 1.7801422504277506 5 0.6596697379783644 1.4332720945219053 6 0.46650313450739245 1.2162921283832617 7 0.3476247415017527 1.0574036335841006 8 0.27849467195984523 0.9681417686767854 9 0.23131421522002074 0.9046423432471209 >10 3.141186637713813 30.606338541901785 >50 0.27761351816188046 7.9251505316077715 >100 0.07095195210379157 5.4820990332689075 >500 0.004569519377971262 1.3646226141287565 >1k 0.0029771111093742043 1.850083844576584 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.026774141918336204 0.0 0.0 0.0 0.0 12 0.0411227152115882 0.0 0.0 0.0 0.0 13 0.11665242163977863 0.0 0.0 0.0 0.0 14 0.7347061219889075 0.0 0.0 0.0 0.0 15 1.1970556135908503 0.0 0.0 0.0 0.0 16 1.6217733830711094 0.0 0.0 0.0 0.0 17 1.9528556175551983 0.0 0.0 0.0 0.0 18 2.370413892732433 0.0 0.0 0.0 0.0 19 2.7109928118085502 0.0 0.0 0.0 0.0 20 2.9356293417377515 0.0 0.0 0.0 0.0 21 3.2125420139539136 0.0 0.0 0.0 0.0 22 3.384902401596153 0.0 0.0 0.0 0.0 23 3.5612271373235385 0.0 0.0 0.0 0.0 24 3.8260100877866425 0.0 0.0 0.0 0.0 25 4.020825253015641 0.0 0.0 0.0 0.0 26 4.224841255964643 0.0 0.0 0.0 0.0 27 4.50352900941296 0.0 0.0 0.0 0.0 28 4.7663297858334905 0.0 0.0 0.0 0.0 29 4.97306758000513 0.0 0.0 0.0 0.0 30 5.210159263246617 0.0 0.0 0.0 0.0 31 5.4380205240809 0.0 0.0 0.0 0.0 32 5.981727905489942 0.0 0.0 0.0 0.0 33 6.301449620088239 0.0 0.0 0.0 0.0 34 6.637531666709564 0.0 0.0 0.0 0.0 35 6.875422136505522 0.0 0.0 0.0 0.0 36 7.134850258584959 0.0 0.0 0.0 0.0 37 7.376675491778859 0.0 0.0 0.0 0.0 38 7.601844546077706 0.0 0.0 0.0 0.0 39 7.837959934641509 0.0 0.0 0.0 0.0 40 8.07715213067438 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGATG 20 6.3132006E-4 46.000004 31 TAGACCG 20 6.3132006E-4 46.000004 16 TTTCGGG 20 6.3132006E-4 46.000004 43 CGATTAA 80 0.0 46.000004 16 TGACGAG 20 6.3132006E-4 46.000004 36 TGTGCAC 40 5.6170393E-9 46.000004 21 TGTTGTT 40 5.6170393E-9 46.000004 26 ATTCCGA 20 6.3132006E-4 46.000004 30 ACCTAAT 20 6.3132006E-4 46.000004 23 TACTGAG 20 6.3132006E-4 46.000004 37 TATAGAG 20 6.3132006E-4 46.000004 23 TAGGCTG 40 5.6170393E-9 46.000004 21 GATTCCG 20 6.3132006E-4 46.000004 29 TGCACAC 20 6.3132006E-4 46.000004 18 CTTGTGT 25 3.418573E-5 46.0 44 CTTAATG 45 3.110472E-10 46.0 41 ATCCTTA 170 0.0 46.0 29 ATTTAGT 180 0.0 46.0 44 ATTTAGG 45 3.110472E-10 46.0 30 CTTAAAT 50 1.6370905E-11 46.0 26 >>END_MODULE