##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528066_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3235799 Sequences flagged as poor quality 0 Sequence length 59 %GC 40 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.3482747228737 31.0 30.0 33.0 27.0 34.0 2 31.1388908890818 31.0 31.0 34.0 28.0 34.0 3 31.36210531000226 31.0 31.0 34.0 30.0 34.0 4 35.20019506774061 35.0 35.0 37.0 33.0 37.0 5 34.971556329673135 35.0 35.0 37.0 32.0 37.0 6 35.079164064269754 36.0 35.0 37.0 32.0 37.0 7 34.85282367662516 36.0 35.0 37.0 32.0 37.0 8 35.02094969434133 37.0 35.0 37.0 32.0 37.0 9 36.83131492407285 39.0 37.0 39.0 33.0 39.0 10 37.012671677072646 39.0 37.0 39.0 33.0 39.0 11 37.40133549704416 39.0 37.0 39.0 35.0 39.0 12 37.334970744474546 39.0 37.0 39.0 35.0 39.0 13 37.16670782085043 39.0 37.0 39.0 34.0 39.0 14 37.1481365189865 40.0 36.0 40.0 32.0 40.0 15 36.15163086458708 38.0 35.0 40.0 30.0 40.0 16 35.488360989047834 38.0 34.0 40.0 27.0 40.0 17 35.890890627013604 38.0 34.0 40.0 29.0 40.0 18 35.346771848313196 38.0 34.0 40.0 27.0 40.0 19 36.17087340715539 38.0 34.0 40.0 30.0 40.0 20 36.23162470845686 38.0 35.0 40.0 30.0 40.0 21 36.30732811277833 38.0 35.0 40.0 30.0 40.0 22 36.381295624357385 39.0 35.0 40.0 30.0 40.0 23 36.270308508037736 39.0 35.0 40.0 30.0 40.0 24 36.39337393948141 39.0 35.0 40.0 30.0 40.0 25 36.583377088626335 39.0 36.0 40.0 30.0 40.0 26 36.17536719678818 39.0 35.0 40.0 30.0 40.0 27 35.82642308746619 38.0 35.0 40.0 27.0 40.0 28 35.596541997818775 38.0 34.0 40.0 27.0 40.0 29 35.29932854296574 37.0 34.0 40.0 27.0 40.0 30 34.66782238328153 37.0 33.0 40.0 25.0 40.0 31 34.61857705005781 37.0 33.0 40.0 25.0 40.0 32 34.36229598933679 37.0 33.0 40.0 25.0 40.0 33 34.10476423288344 37.0 33.0 40.0 24.0 40.0 34 33.79439421299036 36.0 33.0 40.0 22.0 40.0 35 33.87927680303999 37.0 33.0 40.0 22.0 40.0 36 33.43387429194458 36.0 32.0 40.0 20.0 40.0 37 33.415158049062995 37.0 32.0 40.0 20.0 40.0 38 33.299335959990096 37.0 32.0 40.0 18.0 40.0 39 32.80510254190696 36.0 31.0 40.0 15.0 40.0 40 32.404574882432435 36.0 31.0 40.0 15.0 40.0 41 31.91242997479139 36.0 30.0 40.0 12.0 40.0 42 31.32546242829051 35.0 28.0 39.0 10.0 40.0 43 30.66267527741989 35.0 27.0 38.0 10.0 40.0 44 30.045172150680557 35.0 26.0 38.0 9.0 40.0 45 29.626772861973194 34.0 24.0 38.0 9.0 40.0 46 29.21699957259397 34.0 23.0 37.0 8.0 40.0 47 28.634205956550453 33.0 22.0 37.0 8.0 40.0 48 28.066409254715758 33.0 20.0 37.0 8.0 40.0 49 27.62022548372133 33.0 19.0 36.0 8.0 40.0 50 27.00416713151837 33.0 17.0 35.0 8.0 39.0 51 26.61038896420946 33.0 15.0 35.0 8.0 39.0 52 25.904331202278016 31.0 12.0 35.0 8.0 39.0 53 25.678627442557463 31.0 12.0 35.0 8.0 39.0 54 25.31177091036866 31.0 11.0 35.0 8.0 38.0 55 24.850699317232003 30.0 10.0 35.0 8.0 38.0 56 24.046970779087328 28.0 10.0 35.0 8.0 38.0 57 23.200445083270004 26.0 9.0 35.0 8.0 38.0 58 22.364857026039008 23.0 9.0 34.0 8.0 37.0 59 21.282795377586805 22.0 8.0 33.0 8.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 10.0 14 39.0 15 172.0 16 600.0 17 1919.0 18 4761.0 19 10097.0 20 18616.0 21 29995.0 22 44143.0 23 62123.0 24 82700.0 25 107894.0 26 134606.0 27 160419.0 28 169337.0 29 156507.0 30 152716.0 31 169833.0 32 197176.0 33 228698.0 34 263036.0 35 293669.0 36 325725.0 37 350968.0 38 252869.0 39 17168.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.91323008629399 25.424972317501798 38.26597387538595 6.3958237208182585 2 18.678910525653787 23.119853859896736 38.78080807862293 19.420427535826544 3 22.37917126496423 24.002479758476962 33.39008387109335 20.22826510546545 4 26.491509515887728 28.163955795771002 35.7520970863765 9.59243760196477 5 0.0 0.0 0.0 100.0 6 0.0 0.0 100.0 0.0 7 0.0 0.0 0.0 100.0 8 0.0 0.0 0.0 100.0 9 0.0 100.0 0.0 0.0 10 0.0 0.0 100.0 0.0 11 99.21144669369141 0.6193833424140375 0.09373264532191276 0.07543731857263075 12 98.88287251464013 0.8338280591594225 0.1597132578383268 0.12358616836212633 13 93.65538465151883 5.259659206273319 0.6735276202261018 0.41142852198174235 14 40.3028432853833 50.74239778181525 5.5593997031336 3.39535922966785 15 41.068712858864224 42.78955522268225 11.226624397868965 4.915107520584561 16 27.28828335752623 58.46651785231407 8.235431187165828 6.009767602993882 17 40.89110602976266 28.984989487913186 15.0593099262346 15.064594556089547 18 12.144821109098556 35.90315714913071 40.08781138754292 11.864210354227813 19 21.453928380594718 38.40266345344689 19.574825259541768 20.568582906416623 20 22.54243851364068 33.048189952466146 25.001645652279393 19.407725881613782 21 25.988604360159577 37.573254704634 20.03947093129085 16.398670003915573 22 24.771532471578116 39.73618262444608 17.98650039758341 17.505784506392395 23 8.786485192683477 30.596492550989723 21.22063206027321 39.39639019605359 24 11.029918731046026 36.73352393025648 35.54568747935208 16.690869859345405 25 12.696029635956993 27.69968097523981 15.15882166970198 44.44546771910122 26 11.642441325929083 35.269279704950776 6.670315430593804 46.417963538526344 27 12.221000130106969 64.98163204822055 12.336952944234175 10.460414877438309 28 15.941255930915363 38.64621999079671 37.662042667050706 7.7504814112372244 29 45.39101470765026 32.16516229839987 9.607178937875931 12.83664405607394 30 50.70262398869646 32.10122136758186 9.425307319768626 7.770847323953063 31 40.83350047391695 34.52967875940378 11.4620840169615 13.174736749717766 32 25.68181769015937 55.216408682986795 10.951947262484474 8.149826364369357 33 22.3602578528518 55.667549189551025 10.774494954723703 11.197698002873478 34 14.383526294432997 63.845096682457715 11.666732080700934 10.10464494240835 35 18.740162785142093 56.165633279446595 11.691022835472785 13.403181099938532 36 10.84894333671529 56.62944453595542 18.444810694360186 14.076801432969106 37 12.122322801879845 60.03846345214892 14.693434295517118 13.145779450454123 38 13.118027417648623 56.85594191728225 15.38772958394511 14.638301081124014 39 15.862357334309085 56.924982052346266 13.422681693145957 13.78997892019869 40 16.34653450353375 57.06874870781529 13.634097791611902 12.950618997039061 41 15.431088272170182 52.802661722807876 13.236112626278704 18.53013737874324 42 17.047505113883773 52.795213794181905 17.329413848017136 12.82786724391719 43 17.305555752999492 51.907488691355674 10.722204933001093 20.064750622643743 44 16.89310739016855 52.90007197604054 10.426080235515247 19.780740398275665 45 16.642659201019594 59.10521636232659 13.208515114813993 11.04360932183983 46 17.585641135311555 52.99680233537374 19.076648456841728 10.340908072472981 47 25.424446944943117 52.55159544829577 11.696647412277462 10.32731019448365 48 25.96147041271723 53.06587337470591 10.689260983145122 10.283395229431742 49 23.733396295628992 54.4582342722771 11.27795638727869 10.530413044815207 50 18.810469995200567 58.72781343958633 11.802679956326088 10.659036608887016 51 17.68407122939342 59.10645253305289 11.634406216208113 11.575070021345578 52 19.234043894568234 56.91360928166428 11.68675804646704 12.165588777300444 53 16.768346859616436 56.09167936574553 11.322551246230066 15.817422528407976 54 16.147171069649257 58.20046300774554 12.43918426329942 13.213181659305784 55 18.858093472431385 54.644339775122 12.820944687849895 13.67662206459672 56 17.526243131912704 51.826859455732574 15.768902827400588 14.877994584954132 57 20.631998464675956 49.98079299734007 14.14380188633472 15.243406651649252 58 21.2019967865742 47.35593898137678 15.07522562433575 16.366838607713273 59 20.95754402544781 43.52974334932423 18.24717789949252 17.26553472573544 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 4.0 5 8.0 6 24.0 7 40.0 8 59.0 9 504.0 10 930.0 11 2597.0 12 4264.0 13 7437.0 14 11750.5 15 12891.0 16 11892.0 17 10893.0 18 10424.0 19 10859.0 20 11763.0 21 13940.0 22 16117.0 23 22549.0 24 28981.0 25 41657.0 26 80433.0 27 106533.0 28 141020.0 29 175507.0 30 201716.0 31 230502.5 32 233080.0 33 219766.5 34 206453.0 35 190412.0 36 162640.5 37 150910.0 38 146005.5 39 141101.0 40 136748.5 41 132396.0 42 128293.0 43 129450.0 44 134710.0 45 136223.0 46 137736.0 47 146720.5 48 158206.5 49 160708.0 50 177127.5 51 193547.0 52 190859.0 53 179919.0 54 171667.0 55 145462.5 56 119258.0 57 96051.0 58 53810.5 59 34777.0 60 25101.0 61 15425.0 62 11307.5 63 7190.0 64 5374.5 65 3904.5 66 4250.0 67 2861.5 68 1473.0 69 1020.5 70 506.0 71 444.0 72 328.5 73 213.0 74 162.0 75 74.5 76 38.0 77 32.5 78 27.0 79 19.5 80 12.0 81 11.5 82 8.5 83 6.0 84 11.5 85 17.0 86 9.5 87 1.0 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 3235799.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.72544934410092 #Duplication Level Percentage of deduplicated Percentage of total 1 89.99867014431801 54.65209684885232 2 4.64794687341431 5.644973248311858 3 1.4278860218619767 2.6012706086918778 4 0.7370861386660251 1.7903954790321066 5 0.4489107152293348 1.3630152448841544 6 0.3190521647186092 1.1624751640047388 7 0.2581633196839438 1.0973958514380584 8 0.2063212353895768 1.0023159782609656 9 0.1795157236498766 0.9811055684673182 >10 1.6438285726439836 20.28580858865733 >50 0.1024809858167529 4.049110727243554 >100 0.02585556320831552 2.8584986204704528 >500 0.0025068535024048363 1.0713172552187047 >1k 0.0017756878968751074 1.4402208164665442 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.025434212693680913 0.0 0.0 0.0 0.0 12 0.03866123946512129 0.0 0.0 0.0 0.0 13 0.10216951052892964 0.0 0.0 0.0 0.0 14 0.655572240426553 0.0 0.0 0.0 0.0 15 1.044904210675632 0.0 0.0 0.0 0.0 16 1.4114597352925815 0.0 0.0 0.0 0.0 17 1.6938629377164651 0.0 0.0 0.0 0.0 18 2.057853408076336 0.0 0.0 0.0 0.0 19 2.3550906592158536 0.0 0.0 0.0 0.0 20 2.543359460831776 0.0 0.0 0.0 0.0 21 2.774708812259352 0.0 0.0 0.0 0.0 22 2.928241216466165 0.0 0.0 0.0 0.0 23 3.079332183488529 0.0 0.0 0.0 0.0 24 3.3050878623795854 0.0 0.0 0.0 0.0 25 3.4649247372905423 0.0 0.0 0.0 0.0 26 3.63913209689477 0.0 0.0 0.0 0.0 27 3.875549748300188 0.0 0.0 0.0 0.0 28 4.099760213783365 0.0 0.0 0.0 0.0 29 4.276748957521774 0.0 0.0 0.0 0.0 30 4.480655318825428 0.0 0.0 0.0 0.0 31 4.677762741134416 0.0 0.0 0.0 0.0 32 5.142686551296913 0.0 0.0 0.0 0.0 33 5.419403368379804 0.0 0.0 0.0 0.0 34 5.712653968926994 0.0 0.0 0.0 0.0 35 5.921381396063229 0.0 0.0 0.0 0.0 36 6.145530053010091 0.0 0.0 0.0 0.0 37 6.361025514872834 0.0 0.0 0.0 0.0 38 6.5637266097183415 0.0 0.0 0.0 0.0 39 6.775946219156381 0.0 0.0 0.0 0.0 40 6.986496998113912 0.0 0.0 0.0 0.0 41 7.2211840105025065 0.0 0.0 0.0 0.0 42 7.489154919696804 0.0 0.0 0.0 0.0 43 7.750975879527746 0.0 0.0 0.0 0.0 44 8.03235924110243 0.0 0.0 0.0 0.0 45 8.335715537337146 0.0 0.0 0.0 0.0 46 8.627235498867513 0.0 0.0 0.0 0.0 47 8.904570401313554 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGCATT 20 3.139097E-4 53.000004 41 TTAGGTG 80 0.0 53.000004 52 GTATTAG 20 3.139097E-4 53.000004 31 GCTATAG 40 1.6025297E-9 53.000004 46 CGATTAA 80 0.0 53.000004 16 TAGCCAC 160 0.0 53.000004 45 TCGTGTA 20 3.139097E-4 53.000004 45 TCAATAG 20 3.139097E-4 53.000004 42 CGTCAGT 195 0.0 53.000004 43 TTTAGCA 15 0.0066973604 53.0 28 CGGGTCA 35 3.3445758E-8 53.0 23 GATGTTA 30 7.014478E-7 53.0 31 ATGATTA 105 0.0 53.0 39 CGACGTT 45 7.6397555E-11 53.0 31 GCAACTT 15 0.0066973604 53.0 52 CTTCAAT 235 0.0 53.0 53 TTATGCA 15 0.0066973604 53.0 44 CGGCAAT 25 1.4793348E-5 53.0 28 TAACGTG 15 0.0066973604 53.0 30 CTGACTA 70 0.0 53.0 18 >>END_MODULE