##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528065_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5352556 Sequences flagged as poor quality 0 Sequence length 52 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.49475969985181 31.0 31.0 34.0 30.0 34.0 2 31.959813591861533 31.0 31.0 34.0 30.0 34.0 3 32.097605517812426 33.0 31.0 34.0 30.0 34.0 4 35.804464820171894 37.0 35.0 37.0 35.0 37.0 5 35.62370818726605 37.0 35.0 37.0 33.0 37.0 6 35.84370046758969 37.0 35.0 37.0 35.0 37.0 7 35.82133264929877 37.0 35.0 37.0 33.0 37.0 8 35.89866673043682 37.0 35.0 37.0 35.0 37.0 9 37.492319930889096 39.0 37.0 39.0 34.0 39.0 10 37.67474455194864 39.0 37.0 39.0 35.0 39.0 11 37.3115872117919 39.0 37.0 39.0 34.0 39.0 12 37.18480890251312 39.0 37.0 39.0 34.0 39.0 13 37.250825773705124 39.0 37.0 39.0 35.0 39.0 14 37.962912111522044 40.0 38.0 40.0 33.0 40.0 15 37.305224830903214 39.0 37.0 40.0 32.0 40.0 16 36.909273812361796 39.0 36.0 40.0 31.0 40.0 17 36.787497038797916 39.0 36.0 40.0 31.0 40.0 18 37.02804884245956 39.0 36.0 40.0 32.0 40.0 19 37.11764528946544 39.0 36.0 40.0 32.0 40.0 20 37.220560606932466 39.0 36.0 40.0 32.0 40.0 21 37.07065390815154 39.0 36.0 40.0 32.0 40.0 22 37.13365147417421 39.0 36.0 40.0 32.0 40.0 23 37.10170486773048 39.0 36.0 40.0 32.0 40.0 24 36.989723040730446 39.0 36.0 40.0 31.0 40.0 25 37.065759050442445 39.0 36.0 40.0 31.0 40.0 26 36.913894034924624 39.0 35.0 40.0 31.0 40.0 27 36.74722076705036 39.0 35.0 40.0 31.0 40.0 28 36.70188990082495 39.0 35.0 40.0 31.0 40.0 29 36.76644597459606 39.0 35.0 40.0 31.0 40.0 30 36.75854395544857 39.0 35.0 40.0 31.0 40.0 31 36.75769632302773 39.0 35.0 40.0 31.0 40.0 32 36.72544649696332 39.0 35.0 40.0 31.0 40.0 33 36.61368325712052 39.0 35.0 40.0 31.0 40.0 34 36.53629985375211 39.0 35.0 40.0 31.0 40.0 35 36.45483036515638 39.0 35.0 40.0 31.0 40.0 36 36.43444645885069 39.0 35.0 40.0 31.0 40.0 37 36.28886087319778 38.0 35.0 40.0 31.0 40.0 38 36.067975001102276 38.0 35.0 40.0 30.0 40.0 39 35.869636674515874 38.0 35.0 40.0 30.0 40.0 40 35.809372382091844 38.0 35.0 40.0 30.0 40.0 41 35.67431148782003 38.0 34.0 40.0 29.0 40.0 42 35.507840366359545 37.0 34.0 40.0 29.0 40.0 43 35.308564543743216 37.0 34.0 40.0 29.0 40.0 44 35.06763292154253 37.0 34.0 40.0 28.0 40.0 45 34.939680033240194 36.0 34.0 40.0 28.0 40.0 46 34.79964151706213 36.0 33.0 40.0 28.0 40.0 47 34.522237600129735 36.0 33.0 39.0 27.0 40.0 48 34.383342649754624 35.0 33.0 39.0 27.0 40.0 49 34.29141927707062 35.0 33.0 39.0 27.0 40.0 50 34.14140085596489 35.0 33.0 39.0 27.0 40.0 51 33.9883717237148 35.0 33.0 38.0 27.0 40.0 52 33.17858813621007 35.0 32.0 37.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 8.0 14 19.0 15 37.0 16 149.0 17 387.0 18 888.0 19 1914.0 20 3737.0 21 6282.0 22 10662.0 23 16030.0 24 23496.0 25 32940.0 26 44865.0 27 60243.0 28 78142.0 29 100741.0 30 127896.0 31 158323.0 32 191389.0 33 241724.0 34 342713.0 35 533802.0 36 567779.0 37 972351.0 38 1488705.0 39 347332.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.4721916034134 22.311658205911343 29.94999024764991 19.26615994302535 2 25.23542023661219 20.872850279380543 34.957373636072184 18.93435584793508 3 19.189112640764524 22.237357255113256 36.32152564120767 22.25200446291454 4 19.000623253638075 21.51822419046153 37.39163121319982 22.08952134270057 5 0.0 0.0 100.0 0.0 6 0.0 0.0 100.0 0.0 7 0.0 100.0 0.0 0.0 8 0.0 100.0 0.0 0.0 9 0.0 0.0 0.0 100.0 10 0.0 0.0 100.0 0.0 11 99.49213048868614 0.43218604345288497 0.048500193178735544 0.02718327468222658 12 99.61156875332084 0.30262177546577745 0.05634691164370817 0.029462559569671014 13 99.18362367437165 0.5148755099432869 0.12437048766981607 0.17713032801525103 14 70.8541676163687 17.823241830631943 3.886348877059857 7.436241675939495 15 36.21256835052263 24.233300875320126 15.256598903402413 24.29753187075483 16 27.519002136549343 16.985062837268774 28.406727552219913 27.089207473961974 17 22.887084226676002 16.62994277873973 29.547322811755727 30.93565018282854 18 24.141550317268983 15.893191962867833 32.07654436497255 27.888713354890637 19 23.95289278617543 15.75251151038868 30.028681624255775 30.265914079180117 20 29.748273535111075 17.341453316882628 22.983468085154083 29.926805062852214 21 31.46890943317548 19.256388910270157 19.981780667030854 29.29292098952351 22 31.548740452225065 20.072765235898512 20.387736251615117 27.990758060261307 23 31.720023106717615 19.043481282587233 19.16936506596101 30.067130544734145 24 32.098645955315554 20.24466441827045 19.881342670679206 27.775346955734793 25 34.95003134950853 18.514930063319284 19.331997647479074 27.203040939693114 26 35.34487074960075 18.06865729195547 19.024574427619253 27.561897530824524 27 33.69096932381464 19.531902141705757 19.417545561410286 27.359582973069312 28 32.620116445302024 18.35366131620108 19.71839248388994 29.307829754606956 29 30.313536187197293 20.471004880658885 18.904855923039385 30.310603009104437 30 30.874950210703073 19.565624348442128 20.136211559486718 29.423213881368078 31 31.325426581244546 18.096737334462265 19.906825823027354 30.671010261265835 32 31.748626263788736 19.151934141370962 18.696861835728576 30.402577759111722 33 30.575896823872554 20.643128254986966 20.464521996593778 28.316452924546702 34 31.39154452564345 20.067889060852423 19.428306775305106 29.112259638199024 35 33.92425973684348 21.530349238756212 16.849146463857643 27.696244560542667 36 35.097063907411716 19.52342021269838 18.280742882465873 27.098772997424035 37 34.717077224413906 19.3822166456549 19.554321337319962 26.346384792611232 38 33.10444580122095 21.766666243192972 20.656654503007534 24.472233452578543 39 32.20416563600643 21.950036580654178 22.225194841492552 23.62060294184685 40 33.62718671229222 22.765945839707236 18.58405591646309 25.02281153153746 41 33.66072209239847 22.835501394100312 18.07007717434437 25.433699339156846 42 34.58443031702985 21.78157500827642 18.134663140376297 25.499331534317438 43 33.712136781007054 21.429201301210114 17.791892322098075 27.066769595684754 44 31.95837652142266 21.949793706035024 18.678907796574197 27.412921975968118 45 30.368892917701373 20.672964467816872 19.762222011315718 29.195920603166037 46 29.894428007852696 19.657113349211105 20.382355644667708 30.06610299826849 47 28.87145879463942 17.96935893804754 23.901534145555882 29.257648121757157 48 29.194650182081233 18.14017452596479 22.6491231478942 30.016052144059774 49 31.03739596559102 17.89550637116174 21.87052316687579 29.196574496371454 50 30.71510134597377 19.534312205234283 22.10179585229935 27.64879059649259 51 31.14741816806774 18.864221130988636 23.332049211628984 26.65631148931464 52 31.440810708005674 18.255876257997112 22.552365636155887 27.75094739784133 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.0 4 2.0 5 4.0 6 6.0 7 28.5 8 51.0 9 440.5 10 830.0 11 947.0 12 1064.0 13 2099.5 14 3025.5 15 2916.0 16 3312.0 17 3708.0 18 4448.5 19 5189.0 20 7395.5 21 9602.0 22 11380.5 23 13159.0 24 15326.0 25 17493.0 26 20815.5 27 24138.0 28 26584.5 29 29031.0 30 26297.5 31 23564.0 32 26322.0 33 29080.0 34 30459.0 35 31838.0 36 31057.0 37 30276.0 38 36894.0 39 49023.0 40 54534.0 41 74791.5 42 95049.0 43 102399.0 44 109749.0 45 131714.5 46 153680.0 47 160584.0 48 167488.0 49 219563.5 50 271639.0 51 324875.0 52 378111.0 53 439354.0 54 500597.0 55 543837.5 56 587078.0 57 614439.5 58 641801.0 59 604127.5 60 566454.0 61 516679.5 62 466905.0 63 409526.0 64 306399.5 65 260652.0 66 232215.0 67 203778.0 68 173833.5 69 143889.0 70 105267.5 71 66646.0 72 51338.0 73 36030.0 74 27955.5 75 19881.0 76 13324.0 77 6767.0 78 3700.0 79 633.0 80 385.0 81 137.0 82 215.0 83 293.0 84 157.5 85 22.0 86 12.0 87 2.0 88 1.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 5352556.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 6.335090301514732 #Duplication Level Percentage of deduplicated Percentage of total 1 79.44567956556043 5.03295554113029 2 8.027605049093433 1.0171120578180501 3 3.0654571852549517 0.5825984425205188 4 1.7950250717544196 0.4548658369218884 5 1.218085733798564 0.38583415593003695 6 0.9048809614212838 0.34395015616351815 7 0.6279108355241023 0.2784510291041328 8 0.48404938304690964 0.24531972415957343 9 0.3681132760203934 0.20988277602980496 >10 1.7065514905184542 1.9299950302980668 >50 0.1980397054992907 0.9043014494290217 >100 0.8994424356573237 17.41703025295294 >500 0.9180743872143382 41.45000376642861 >1k 0.34108491963609616 29.747699781113567 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.004894857709101969 0.0 0.0 0.0 0.0 12 0.007174142596546398 0.0 0.0 0.0 0.0 13 0.009901811396274976 0.0 0.0 0.0 0.0 14 0.019691526814478916 0.0 0.0 0.0 0.0 15 0.0344134652678085 0.0 0.0 0.0 0.0 16 0.04721108943091861 0.0 0.0 0.0 0.0 17 0.0566458342518976 0.0 0.0 0.0 0.0 18 0.06570692581263979 0.0 0.0 0.0 0.0 19 0.0768044276416725 0.0 0.0 0.0 0.0 20 0.08911630256647478 0.0 0.0 0.0 0.0 21 0.10273596390210583 0.0 0.0 0.0 0.0 22 0.11495442551184892 0.0 0.0 0.0 0.0 23 0.12737839641472223 0.0 0.0 0.0 0.0 24 0.1402881165559034 0.0 0.0 0.0 0.0 25 0.15439352712984228 0.0 0.0 0.0 0.0 26 0.16986277210364545 0.0 0.0 0.0 0.0 27 0.18555620903359069 0.0 0.0 0.0 0.0 28 0.1998297635746361 0.0 0.0 0.0 0.0 29 0.2187926665316533 0.0 0.0 0.0 0.0 30 0.24003485437611488 0.0 0.0 0.0 0.0 31 0.2571855390209836 0.0 0.0 0.0 0.0 32 0.27087993100866203 0.0 0.0 0.0 0.0 33 0.28349072854165375 0.0 0.0 0.0 0.0 34 0.2958960167815152 0.0 0.0 0.0 0.0 35 0.3067880093174177 0.0 0.0 0.0 0.0 36 0.3182965297327109 0.0 0.0 0.0 0.0 37 0.32739498661947675 0.0 0.0 0.0 0.0 38 0.3373341633417754 0.0 0.0 0.0 0.0 39 0.3481887905516542 0.0 0.0 0.0 0.0 40 0.3623502491146286 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGTA 20 6.3135324E-4 46.000004 28 AGCGTAA 20 6.3135324E-4 46.000004 40 AATTTCC 80 0.0 46.000004 33 TTAATAC 40 5.6188583E-9 46.000004 46 ACGTTAT 20 6.3135324E-4 46.000004 14 CCGATAT 20 6.3135324E-4 46.000004 25 CGATTTC 80 0.0 46.000004 40 TCGATAA 320 0.0 46.000004 36 GTCAGTA 20 6.3135324E-4 46.000004 43 AATGCGT 20 6.3135324E-4 46.000004 46 TCGGATA 20 6.3135324E-4 46.000004 43 ACCTAAC 20 6.3135324E-4 46.000004 24 TGACATA 40 5.6188583E-9 46.000004 41 TGATTGA 40 5.6188583E-9 46.000004 23 CGTAGAC 40 5.6188583E-9 46.000004 16 TCATGTA 40 5.6188583E-9 46.000004 30 ACTACGT 20 6.3135324E-4 46.000004 23 CTCATAT 40 5.6188583E-9 46.000004 46 AATTCGT 20 6.3135324E-4 46.000004 19 CTATTAG 80 0.0 46.000004 34 >>END_MODULE