##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528063_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4773516 Sequences flagged as poor quality 0 Sequence length 59 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.95727321328765 31.0 31.0 33.0 30.0 34.0 2 31.527591611717654 31.0 31.0 34.0 30.0 34.0 3 31.738886179495367 31.0 31.0 34.0 30.0 34.0 4 35.533042520439864 37.0 35.0 37.0 33.0 37.0 5 35.26139935427052 37.0 35.0 37.0 33.0 37.0 6 35.55229185363577 37.0 35.0 37.0 33.0 37.0 7 35.39454942646049 37.0 35.0 37.0 33.0 37.0 8 35.515850161599964 37.0 35.0 37.0 33.0 37.0 9 37.123768727286134 39.0 37.0 39.0 33.0 39.0 10 37.30067208321916 39.0 37.0 39.0 34.0 39.0 11 36.44196479073287 37.0 35.0 39.0 33.0 39.0 12 36.49467310887824 37.0 35.0 39.0 33.0 39.0 13 36.70490766135486 39.0 37.0 39.0 33.0 39.0 14 37.17254996107691 39.0 37.0 40.0 32.0 40.0 15 36.51611663184956 39.0 36.0 40.0 31.0 40.0 16 35.92036750269612 38.0 35.0 40.0 30.0 40.0 17 36.047536658513344 38.0 35.0 40.0 30.0 40.0 18 36.297996277796074 38.0 35.0 40.0 30.0 40.0 19 36.49522406544777 39.0 35.0 40.0 30.0 40.0 20 36.5131988664121 39.0 35.0 40.0 30.0 40.0 21 36.32857709076496 39.0 35.0 40.0 30.0 40.0 22 36.2837350917018 39.0 35.0 40.0 30.0 40.0 23 36.24179933617066 38.0 35.0 40.0 30.0 40.0 24 36.192607294078414 38.0 35.0 40.0 30.0 40.0 25 36.17494526047467 38.0 35.0 40.0 30.0 40.0 26 35.81013806175574 38.0 35.0 40.0 29.0 40.0 27 35.616684850328355 38.0 34.0 40.0 27.0 40.0 28 35.56081827315547 38.0 34.0 40.0 27.0 40.0 29 35.516454537912935 38.0 34.0 40.0 27.0 40.0 30 35.44264940140559 38.0 34.0 40.0 27.0 40.0 31 35.44431253608451 38.0 34.0 40.0 27.0 40.0 32 35.399504055291736 38.0 34.0 40.0 27.0 40.0 33 35.175445101681866 38.0 34.0 40.0 27.0 40.0 34 35.08058546362891 38.0 33.0 40.0 26.0 40.0 35 34.916776648491386 38.0 33.0 40.0 26.0 40.0 36 34.78885773086337 37.0 33.0 40.0 25.0 40.0 37 34.71944097390686 37.0 33.0 40.0 26.0 40.0 38 34.609532260916275 37.0 33.0 40.0 25.0 40.0 39 34.28851374961349 37.0 33.0 40.0 24.0 40.0 40 34.24362335854745 37.0 33.0 40.0 24.0 40.0 41 34.01821403761923 36.0 33.0 39.0 24.0 40.0 42 33.95344898812532 36.0 33.0 39.0 24.0 40.0 43 33.802759642996904 36.0 32.0 39.0 23.0 40.0 44 33.57661375807685 35.0 32.0 39.0 23.0 40.0 45 33.47464070509034 35.0 32.0 39.0 23.0 40.0 46 33.33030139628735 35.0 32.0 39.0 23.0 40.0 47 33.010772772103415 35.0 31.0 38.0 23.0 40.0 48 32.859246308172004 35.0 31.0 38.0 23.0 40.0 49 32.634083974998724 35.0 31.0 38.0 22.0 40.0 50 32.26252137837184 35.0 31.0 38.0 21.0 40.0 51 32.074830795581285 35.0 30.0 37.0 20.0 40.0 52 31.486641293335982 34.0 30.0 37.0 18.0 39.0 53 31.470883935447162 34.0 30.0 36.0 20.0 39.0 54 31.50568658406089 34.0 30.0 36.0 20.0 39.0 55 31.48044921185977 34.0 30.0 36.0 20.0 39.0 56 31.343051536854595 34.0 30.0 36.0 20.0 39.0 57 31.06831819564447 34.0 29.0 35.0 20.0 38.0 58 30.950049607040178 34.0 29.0 35.0 20.0 38.0 59 30.264161888218243 33.0 28.0 35.0 18.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 6.0 13 7.0 14 33.0 15 194.0 16 606.0 17 1612.0 18 3727.0 19 6898.0 20 11518.0 21 17897.0 22 26366.0 23 36556.0 24 49508.0 25 64466.0 26 81535.0 27 101318.0 28 122122.0 29 145512.0 30 171817.0 31 208697.0 32 254600.0 33 320123.0 34 432695.0 35 533597.0 36 656528.0 37 811276.0 38 668622.0 39 45679.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.610231954810665 22.691533871469165 29.173066561419297 19.52516761230087 2 24.852121580822185 21.44685384944766 34.65374369751772 19.047280872212433 3 19.311509587482266 22.42692807565744 36.08426157993395 22.17730075692634 4 19.16365211722345 21.59814694242148 37.19566457931638 22.042536361038696 5 0.0 0.0 100.0 0.0 6 0.0 0.0 100.0 0.0 7 0.0 100.0 0.0 0.0 8 0.0 100.0 0.0 0.0 9 0.0 0.0 0.0 100.0 10 0.0 0.0 100.0 0.0 11 99.41994538197841 0.4884659441803484 0.04596192827257728 0.045626745568675166 12 99.59036483799363 0.31808838600310546 0.04629711097647939 0.04524966502678529 13 99.15305615399635 0.5362085305674056 0.12718088721185808 0.18355442822439474 14 70.47310619677404 17.99019841978114 4.114891413373288 7.421803970071536 15 36.32033494807601 24.26527951304657 15.259171646224711 24.15521389265271 16 27.699582446146614 17.007421783021154 28.3026389772235 26.99035679360874 17 22.874669321313682 16.683593393213723 29.464675513814136 30.97706177165846 18 23.990639185036773 16.05523056799223 31.991324633666252 27.96280561330474 19 23.936297689166643 15.916716315604681 30.02828523042554 30.118700764803137 20 29.757478554591625 17.47514829739756 23.00995744017617 29.757415707834646 21 31.337278433758257 19.417259730563384 20.16452861999415 29.0809332156842 22 31.547375142347907 20.239567647830235 20.447799902629423 27.765257307192435 23 31.625284172086154 19.254046702682047 19.22388025933086 29.89678886590094 24 31.97626236090965 20.464957067285415 19.899399101207578 27.659381470597356 25 34.92402665037679 18.767864190672032 19.343687127056867 26.96442203189431 26 35.0441687008067 18.221432587635615 19.2449758207577 27.489422890799993 27 33.623873890859485 19.581101226014535 19.63525418161372 27.159770701512258 28 32.660893982548714 18.403248255583517 19.799640348958714 29.136217412909062 29 30.234129308459423 20.55652479220767 18.89049916246222 30.318846736870686 30 30.71647816829356 19.67928880933886 20.313580178635622 29.290652843731955 31 31.077847020938027 18.269573203483557 20.04229167766485 30.610288097913575 32 31.56639676079435 19.37115115985785 18.68559778578306 30.376854293564744 33 30.44196353379773 20.866652588993105 20.53346003239541 28.15792384481376 34 31.274641165966553 20.24520290703959 19.588119113877486 28.892036813116366 35 33.76050274053758 21.648822377467678 17.060925322131524 27.529749559863216 36 34.96764229972205 19.604689708801644 18.53721659254939 26.890451398926913 37 34.64733332830559 19.485909338106335 19.58409692143066 26.282660412157412 38 33.04231095067032 21.868492742037525 20.66767975638921 24.42151655090294 39 31.962666512482624 22.16014359227035 22.367600737066766 23.509589158180262 40 33.36953306535476 23.14503606984872 18.566000407246985 24.91943045754953 41 33.503103372859755 23.05824469845707 18.18822855103031 25.250423377652865 42 34.5007746910244 22.01735576040805 18.09211491068638 25.389754637881172 43 33.48569482117584 21.69815708169827 17.840287955460923 26.97586014166497 44 31.842461615295726 22.118287652120575 18.637645710206062 27.401605022377634 45 30.137743332168576 20.930923872466334 19.679582094204775 29.25175070116032 46 29.778385575747517 19.919656705874665 20.320074343523725 29.98188337485409 47 28.712399832743827 18.170568612318466 23.823843892007485 29.29318766293022 48 29.066939337796292 18.240391359325077 22.53793639740602 30.154732905472613 49 30.862680673951864 18.08694052769489 21.884581511824827 29.165797286528424 50 30.47468574526617 19.630833959706013 22.261724900471684 27.63275539455613 51 30.835028100879942 19.00404230340906 23.526599680403294 26.63432991530771 52 31.034398962944714 18.586509398942 22.813330886499593 27.565760751613695 53 28.600721145587443 21.32920472037802 23.19870720031105 26.871366933723483 54 28.771203448359657 20.670403115858416 22.995712175260334 27.562681260521593 55 28.711876109768987 20.823518764784698 21.867110113383927 28.597495012062385 56 30.242802160922892 19.67583223770487 21.67402392701732 28.407341674354917 57 29.278502470715505 20.022453051377642 22.065244989228066 28.633799488678786 58 30.233752227917538 19.49954708437135 21.828543153516193 28.438157534194918 59 28.321702493507928 20.166162635675676 23.36145935197452 28.15067551884188 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.5 2 1.0 3 0.5 4 1.0 5 2.0 6 17.0 7 32.0 8 292.5 9 633.5 10 714.0 11 1402.0 12 2090.0 13 1865.5 14 1612.5 15 1584.0 16 1662.5 17 1741.0 18 2161.5 19 3200.0 20 3818.0 21 5084.5 22 6351.0 23 8198.5 24 10046.0 25 12128.5 26 15905.5 27 17600.0 28 19878.5 29 22157.0 30 23058.5 31 25804.5 32 27649.0 33 27127.5 34 26606.0 35 28565.0 36 31903.0 37 33282.0 38 38772.5 39 44263.0 40 48022.5 41 51782.0 42 58903.5 43 77232.0 44 88439.0 45 93745.5 46 99052.0 47 113852.5 48 153910.5 49 179168.0 50 201645.0 51 224122.0 52 276634.5 53 367856.0 54 406565.0 55 437816.0 56 469067.0 57 480082.0 58 467478.0 59 443859.0 60 424344.5 61 404830.0 62 362346.5 63 319863.0 64 277255.0 65 211730.0 66 188813.0 67 175153.0 68 161493.0 69 138098.0 70 83977.0 71 53251.0 72 39047.0 73 24843.0 74 19529.0 75 9555.5 76 4896.0 77 3636.5 78 2377.0 79 1669.0 80 961.0 81 560.5 82 103.0 83 46.0 84 38.0 85 30.0 86 16.0 87 2.5 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 4773516.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 12.515343675251986 #Duplication Level Percentage of deduplicated Percentage of total 1 80.56571916996322 10.083076638559268 2 8.682977883715226 2.1734090467861646 3 3.4949814524155216 1.3122268204683478 4 1.8909053670361387 0.9466132210334309 5 1.1395676722498638 0.7131040529706981 6 0.7408426141792614 0.5563139955435339 7 0.5127373804428929 0.44919591719738605 8 0.34317720820419956 0.343598456175125 9 0.26747829566526804 0.3012824516329343 >10 1.0266957397798826 2.291118512058008 >50 0.12421618810309609 1.1255656974142894 >100 0.6684005966300536 25.4832313579404 >500 0.4380320394497558 37.25289552525825 >1k 0.10426839216567153 16.968368306962155 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.005006791639537817 0.0 0.0 0.0 0.0 12 0.0071645302959076704 0.0 0.0 0.0 0.0 13 0.009112779762338704 0.0 0.0 0.0 0.0 14 0.01923110763638375 0.0 0.0 0.0 0.0 15 0.033643963904174616 0.0 0.0 0.0 0.0 16 0.04629711097647939 0.0 0.0 0.0 0.0 17 0.05436244478912399 0.0 0.0 0.0 0.0 18 0.06282580806265235 0.0 0.0 0.0 0.0 19 0.07332121647858728 0.0 0.0 0.0 0.0 20 0.08549253841403276 0.0 0.0 0.0 0.0 21 0.09734962656457001 0.0 0.0 0.0 0.0 22 0.10845255363132751 0.0 0.0 0.0 0.0 23 0.11930409367015843 0.0 0.0 0.0 0.0 24 0.1314754156056039 0.0 0.0 0.0 0.0 25 0.14463133673376186 0.0 0.0 0.0 0.0 26 0.15837382759374852 0.0 0.0 0.0 0.0 27 0.17303807088946596 0.0 0.0 0.0 0.0 28 0.1873671314812813 0.0 0.0 0.0 0.0 29 0.20454524505626462 0.0 0.0 0.0 0.0 30 0.2240696375585627 0.0 0.0 0.0 0.0 31 0.24049359004976625 0.0 0.0 0.0 0.0 32 0.25172221063048705 0.0 0.0 0.0 0.0 33 0.2635583498620304 0.0 0.0 0.0 0.0 34 0.27392806476400205 0.0 0.0 0.0 0.0 35 0.2841720861520104 0.0 0.0 0.0 0.0 36 0.29529596213776177 0.0 0.0 0.0 0.0 37 0.30373837649229624 0.0 0.0 0.0 0.0 38 0.31308159436356764 0.0 0.0 0.0 0.0 39 0.32296948412868 0.0 0.0 0.0 0.0 40 0.3356226312009848 0.0 0.0 0.0 0.0 41 0.3453219806951522 0.0 0.0 0.0 0.0 42 0.355126074784289 0.0 0.0 0.0 0.0 43 0.3634008977868724 0.0 0.0 0.0 0.0 44 0.37209469916933346 0.0 0.0 0.0 0.0 45 0.38106083649871497 0.0 0.0 0.0 0.0 46 0.38967084220520054 0.0 0.0 0.0 0.0 47 0.39790376736979616 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAATTAG 15 0.0066975527 53.000004 25 TACCTAA 15 0.0066975527 53.000004 20 CACGTTA 1140 0.0 53.000004 1 CGATCTA 15 0.0066975527 53.000004 25 CGTTTAC 155 0.0 53.000004 25 CGATACA 30 7.0151873E-7 53.000004 23 GTACGTA 60 0.0 53.000004 27 TACCGAT 30 7.0151873E-7 53.000004 22 TAATCAA 40 1.6025297E-9 53.0 53 TAATATC 90 0.0 53.0 20 CTATGCG 55 0.0 53.0 32 CGTATTG 100 0.0 53.0 17 AGTCATA 20 3.1392492E-4 53.0 19 CCGATTA 965 0.0 53.0 1 ACGATAC 70 0.0 53.0 41 TAACACC 85 0.0 53.0 31 AATCTAT 55 0.0 53.0 20 GTACTCA 40 1.6025297E-9 53.0 30 CGAATAA 45 7.6397555E-11 53.0 41 ACTAATT 40 1.6025297E-9 53.0 48 >>END_MODULE