##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528058_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1509919 Sequences flagged as poor quality 0 Sequence length 52 %GC 37 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.905568444399997 31.0 31.0 33.0 28.0 34.0 2 31.611475847379893 31.0 31.0 34.0 30.0 34.0 3 31.84611624861996 31.0 31.0 34.0 30.0 34.0 4 35.56458260343767 37.0 35.0 37.0 33.0 37.0 5 35.49572460509471 37.0 35.0 37.0 33.0 37.0 6 35.71568872237518 37.0 35.0 37.0 33.0 37.0 7 35.55023878764358 37.0 35.0 37.0 33.0 37.0 8 34.30153339351316 35.0 35.0 37.0 31.0 37.0 9 37.11416970049387 39.0 37.0 39.0 34.0 39.0 10 36.799759457295394 39.0 37.0 39.0 33.0 39.0 11 37.53123313237332 39.0 37.0 39.0 35.0 39.0 12 37.59053631353735 39.0 37.0 39.0 35.0 39.0 13 37.35354214365142 39.0 37.0 39.0 35.0 39.0 14 37.268038881555896 40.0 37.0 40.0 31.0 40.0 15 35.89512483782243 38.0 35.0 40.0 30.0 40.0 16 36.22321329819679 38.0 35.0 40.0 30.0 40.0 17 36.02443309872914 38.0 35.0 40.0 29.0 40.0 18 36.33603921799779 38.0 35.0 40.0 30.0 40.0 19 36.634211504060815 39.0 35.0 40.0 31.0 40.0 20 36.77975441066706 39.0 35.0 40.0 31.0 40.0 21 36.863356246262214 39.0 35.0 40.0 31.0 40.0 22 36.74565920423546 39.0 35.0 40.0 31.0 40.0 23 36.71784512944072 39.0 35.0 40.0 31.0 40.0 24 36.76572186984865 39.0 35.0 40.0 31.0 40.0 25 36.610642027817384 39.0 35.0 40.0 31.0 40.0 26 36.08112951754366 39.0 35.0 40.0 30.0 40.0 27 35.30549784458636 37.0 35.0 40.0 28.0 40.0 28 34.778258303922264 35.0 34.0 40.0 28.0 40.0 29 34.64906329412373 35.0 33.0 40.0 27.0 40.0 30 34.323009379973364 35.0 33.0 40.0 26.0 40.0 31 34.15331087296736 35.0 33.0 40.0 26.0 40.0 32 33.93254803734505 35.0 33.0 39.0 23.0 40.0 33 33.787344884063316 35.0 33.0 39.0 23.0 40.0 34 33.59157345526482 35.0 33.0 39.0 22.0 40.0 35 33.184107226943965 35.0 33.0 39.0 21.0 40.0 36 32.80919903650461 35.0 33.0 39.0 20.0 40.0 37 32.38924405878726 35.0 32.0 39.0 17.0 40.0 38 31.763442277367197 35.0 31.0 39.0 15.0 40.0 39 30.871874584000864 35.0 29.0 38.0 10.0 40.0 40 29.925280760093752 35.0 25.0 37.0 9.0 40.0 41 28.887397270979438 35.0 21.0 37.0 8.0 40.0 42 27.89099150351774 34.0 18.0 35.0 8.0 40.0 43 27.024274149805386 33.0 15.0 35.0 8.0 40.0 44 26.23800482012611 33.0 10.0 35.0 8.0 39.0 45 25.821094376585762 33.0 10.0 35.0 8.0 39.0 46 25.352256644230586 33.0 10.0 35.0 8.0 39.0 47 24.912364835464682 32.0 10.0 35.0 8.0 38.0 48 24.468559571738616 31.0 9.0 35.0 8.0 38.0 49 24.00483535871792 30.0 9.0 35.0 8.0 37.0 50 23.602780678963573 29.0 9.0 35.0 8.0 37.0 51 23.201690289346647 27.0 9.0 35.0 8.0 36.0 52 22.31146107837573 24.0 8.0 35.0 7.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 6.0 14 9.0 15 52.0 16 191.0 17 610.0 18 1549.0 19 3380.0 20 6063.0 21 10238.0 22 15369.0 23 22081.0 24 30716.0 25 41221.0 26 53747.0 27 68157.0 28 85114.0 29 101968.0 30 108527.0 31 93260.0 32 75533.0 33 76402.0 34 95942.0 35 124948.0 36 159361.0 37 196997.0 38 123201.0 39 15273.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.84675734261242 20.663691231119017 39.64431204587795 3.845239380390604 2 22.485510812169395 22.193111021187228 35.97815511957926 19.343223047064114 3 19.354084556853714 22.932488431498644 37.76083352815615 19.952593483491498 4 15.528978706804802 20.126245182688606 36.49156014329245 27.853215967214133 5 0.0 100.0 0.0 0.0 6 0.0 0.0 0.0 100.0 7 100.0 0.0 0.0 0.0 8 0.0 0.0 100.0 0.0 9 0.0 0.0 100.0 0.0 10 100.0 0.0 0.0 0.0 11 99.4256645555159 0.3147188690254245 0.17934736896482525 0.08026920649385827 12 98.75609221421811 0.7066604235061615 0.20279233521798187 0.3344550270577428 13 92.76543973550899 4.777673504340299 1.2854331921116298 1.1714535680390803 14 39.38900033710417 39.309790790101985 11.207952214655222 10.093256658138614 15 24.487075134493967 56.64793939277537 12.829959752807932 6.035025719922724 16 31.76971744841942 48.9450758616853 12.329204414276527 6.956002275618759 17 16.335048436373075 52.08127058471348 18.34727558233256 13.236405396580878 18 16.033906454584653 55.05421151730656 17.67101414049363 11.240867887615163 19 20.65746573160547 52.60043750691262 18.90399418776769 7.8381025737142185 20 15.70435235267587 55.448139933334176 19.47627654198669 9.371231172003267 21 18.782398261098773 52.9678082069303 14.09863707920756 14.151156452763361 22 19.73536328769954 59.384642487444694 12.168202400261206 8.711791824594565 23 14.261294811178612 55.76636892442575 14.273745810205712 15.698590454189926 24 18.876575498420774 58.428233567496 10.673022857517523 12.022168076565697 25 18.83008293822384 51.136981520200756 18.015867076313366 12.017068465262044 26 18.848958122919175 52.43532931236709 18.047789318499866 10.66792324621387 27 21.66142687124276 54.82002676964791 14.698205665337014 8.820340693772314 28 23.601001113304754 54.978180948779375 13.640003205469961 7.780814732445912 29 26.320484741234463 53.74738644920688 10.831243265367215 9.100885544191444 30 27.44650540856827 55.69523928104753 9.35566742321939 7.5025878871648075 31 20.11452269956203 60.454633659156556 11.488695751229038 7.94214789005238 32 17.801617172841723 64.30252218827633 10.606131852105975 7.28972878677598 33 16.132918388337387 66.83133333642401 8.744839954990963 8.290908320247642 34 13.599537458631886 68.85051449779756 9.052538579884088 8.497409463686463 35 15.77660788426399 66.95206828975594 9.471633908838818 7.799689917141251 36 12.348278285126552 66.52754220590641 12.618623912938375 8.50555559602866 37 13.615432351006909 66.91286088856423 11.191130120224992 8.280576640203877 38 15.10458508039173 64.66949551598464 11.954813470126544 8.271105933497095 39 15.004712173302012 62.99821381146936 12.470072897950155 9.527001117278475 40 18.087923921746796 61.86133163434595 11.091985729035796 8.958758714871461 41 18.989627920438114 60.26608049835785 10.489238164431338 10.255053416772688 42 20.929467077373022 56.71595628639682 10.338302915586862 12.016273720643293 43 22.4789541690647 55.48158543603995 11.662479907862606 10.376980487032748 44 21.984358101328613 52.96827180795791 14.140294942973764 10.907075147739713 45 22.520413346676214 52.485067079757265 13.424097584042588 11.570421989523942 46 23.994929529332367 53.172123802667556 11.81983934237532 11.013107325624752 47 23.951351032737517 52.842702158195245 12.302514240830137 10.903432568237104 48 23.70557625938875 52.81707164424052 11.403062018558611 12.07429007781212 49 22.226159151583627 53.21914619261033 11.685262586933472 12.86943206887257 50 22.303911666784774 53.46942451879869 12.182838946989872 12.043824867426663 51 21.825607863733087 53.68029675764065 11.971436878402086 12.522658500224185 52 24.356737017018794 49.95671953263718 12.763598577142218 12.922944873201809 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 2.5 6 5.0 7 12.0 8 19.0 9 409.0 10 799.0 11 2775.5 12 4752.0 13 11058.0 14 22068.0 15 26772.0 16 26910.0 17 27048.0 18 24071.0 19 21094.0 20 22849.5 21 24605.0 22 30855.5 23 37106.0 24 45291.5 25 53477.0 26 64232.5 27 74988.0 28 87609.5 29 100231.0 30 108375.5 31 116520.0 32 116303.5 33 116087.0 34 112343.5 35 108600.0 36 100718.0 37 92836.0 38 84684.0 39 70974.0 40 65416.0 41 64128.0 42 62840.0 43 60867.5 44 58895.0 45 59641.0 46 60387.0 47 62857.0 48 65327.0 49 68246.5 50 71166.0 51 66894.5 52 62623.0 53 60125.5 54 57628.0 55 50627.0 56 43626.0 57 36001.5 58 28377.0 59 23413.0 60 18449.0 61 13079.5 62 7710.0 63 5593.5 64 3858.0 65 4239.0 66 2358.0 67 477.0 68 326.5 69 176.0 70 144.5 71 113.0 72 85.0 73 57.0 74 47.5 75 38.0 76 27.0 77 16.0 78 13.5 79 11.0 80 7.5 81 4.0 82 2.0 83 0.0 84 3.0 85 6.0 86 14.0 87 22.0 88 13.0 89 2.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1509919.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.225145522265734 #Duplication Level Percentage of deduplicated Percentage of total 1 89.5378560475342 47.65665417881689 2 4.822886635008474 5.1339768597143305 3 1.468170678490126 2.3443079404248177 4 0.6969049248792356 1.4837146416752396 5 0.4287099567551784 1.140907491756931 6 0.30193113081616557 0.96421970252356 7 0.2266290369588219 0.8443654430192965 8 0.19756675510930807 0.8412415432843807 9 0.16026313326827965 0.7677025731052606 >10 1.9657195605000641 22.461816498919475 >50 0.1270135236410993 4.461326646539985 >100 0.054193180014854556 6.392527392088342 >500 0.009116577768176001 3.18904713343927 >1k 0.003038859256058667 2.3181919546923924 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TTTCACGTTGGGGGATGCTGAAACTGAAACTCCAGTACTTTGGCCACCTGAT 3909 0.25888805955816174 No Hit GACCACGTTGGGGAGGTACTGGAGGGAGAGACGTGGGCACAAAGGTCGCGGG 2196 0.1454382652314462 No Hit TACCACGTTGGGGGGAATTGTGAAGTGATGAGCTAAACTGGGTGAGTTGGAG 1772 0.11735728870224163 No Hit AATCACGTTGGGGCGGGAGTATGATGAGGCGTGCCATCCTGCAGGAAGCTGC 1673 0.11080064559754531 No Hit CTTTACGTTGGGGGATGGCAAAAATTCACCACCTCTTTGACCCGTGAAATAT 1533 0.10152862504544946 No Hit GGCGACGTTGGGGTTAAGTACAACTACGACTGCCCCCTTGAGACAAGGCCTG 1529 0.10126371017253244 No Hit GCTTACGTTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1528 0.10119748145430318 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.008212361060427744 0.0 0.0 0.0 0.0 12 0.05324788945632183 0.0 0.0 0.0 0.0 13 0.2464370605310616 0.0 0.0 0.0 0.0 14 0.6745394951649725 0.0 0.0 0.0 0.0 15 1.233244962146976 0.0 0.0 0.0 0.0 16 1.5678324466411775 0.0 0.0 0.0 0.0 17 1.770293638268013 0.0 0.0 0.0 0.0 18 2.042228755317338 0.0 0.0 0.0 0.0 19 2.272241093727544 0.0 0.0 0.0 0.0 20 2.498279709043995 0.0 0.0 0.0 0.0 21 2.707761144803132 0.0 0.0 0.0 0.0 22 2.9513503704503354 0.0 0.0 0.0 0.0 23 3.20553619101422 0.0 0.0 0.0 0.0 24 3.4925052271015864 0.0 0.0 0.0 0.0 25 3.8006674530223146 0.0 0.0 0.0 0.0 26 4.131546129295677 0.0 0.0 0.0 0.0 27 4.455801933746115 0.0 0.0 0.0 0.0 28 4.785952094118956 0.0 0.0 0.0 0.0 29 5.1335866361043205 0.0 0.0 0.0 0.0 30 5.510825415138163 0.0 0.0 0.0 0.0 31 5.847797133488617 0.0 0.0 0.0 0.0 32 6.140263153189012 0.0 0.0 0.0 0.0 33 6.411337296901357 0.0 0.0 0.0 0.0 34 6.657045841531897 0.0 0.0 0.0 0.0 35 6.894277110229091 0.0 0.0 0.0 0.0 36 7.1142226834684505 0.0 0.0 0.0 0.0 37 7.3359564321 0.0 0.0 0.0 0.0 38 7.552987941737272 0.0 0.0 0.0 0.0 39 7.77750329653445 0.0 0.0 0.0 0.0 40 8.000429162094125 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCCT 155 0.0 46.000004 19 TATTTAG 35 1.0198528E-7 46.000004 14 CGTGGTT 70 0.0 46.000004 42 TCCGCCG 70 0.0 46.000004 20 TGCCAAT 35 1.0198528E-7 46.000004 35 CATTGTT 70 0.0 46.000004 46 ACCGCCA 35 1.0198528E-7 46.000004 35 GACCGTC 70 0.0 46.000004 28 ACACAAT 70 0.0 46.000004 36 CTAAGTT 155 0.0 46.000004 24 TGTGCTT 35 1.0198528E-7 46.000004 14 CCTAAGT 155 0.0 46.000004 23 CCAGACC 70 0.0 46.000004 25 TTTCACA 140 0.0 46.000004 38 ATACTCA 35 1.0198528E-7 46.000004 17 ATTTTTC 140 0.0 46.000004 35 CTTATAA 140 0.0 46.000004 15 TCTAACT 35 1.0198528E-7 46.000004 28 GATATTT 140 0.0 46.000004 32 ACAGCTT 70 0.0 46.000004 39 >>END_MODULE