##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528057_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1378719 Sequences flagged as poor quality 0 Sequence length 59 %GC 37 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.482713301260084 31.0 31.0 31.0 28.0 34.0 2 31.25397053351698 31.0 31.0 34.0 30.0 34.0 3 31.531739970218734 31.0 31.0 34.0 30.0 34.0 4 35.30392269925924 35.0 35.0 37.0 33.0 37.0 5 35.01673002257893 35.0 35.0 37.0 32.0 37.0 6 35.443109146969036 37.0 35.0 37.0 33.0 37.0 7 35.10940590504664 37.0 35.0 37.0 32.0 37.0 8 33.72747673746427 35.0 33.0 36.0 30.0 37.0 9 36.70132347490678 37.0 35.0 39.0 33.0 39.0 10 36.350678419605444 38.0 35.0 39.0 32.0 39.0 11 37.14950762265552 39.0 37.0 39.0 34.0 39.0 12 37.140555834800274 39.0 37.0 39.0 35.0 39.0 13 36.8919765376411 39.0 37.0 39.0 32.0 39.0 14 36.27999106416899 39.0 36.0 40.0 29.0 40.0 15 34.764881748927806 37.0 33.0 40.0 25.0 40.0 16 35.07359150051606 38.0 33.0 40.0 26.0 40.0 17 34.9587450379664 38.0 33.0 40.0 25.0 40.0 18 35.45532773538335 38.0 34.0 40.0 27.0 40.0 19 35.857713573251694 38.0 34.0 40.0 30.0 40.0 20 35.90809874963644 38.0 34.0 40.0 30.0 40.0 21 35.9283276722813 38.0 34.0 40.0 30.0 40.0 22 35.84301659729067 38.0 34.0 40.0 30.0 40.0 23 35.737903082499045 38.0 34.0 40.0 29.0 40.0 24 35.738795214978545 38.0 34.0 40.0 29.0 40.0 25 35.55600307241722 38.0 34.0 40.0 27.0 40.0 26 34.96477962514479 38.0 33.0 39.0 25.0 40.0 27 34.18507977332582 37.0 33.0 39.0 24.0 40.0 28 33.64737339515884 35.0 33.0 38.0 24.0 40.0 29 33.404449347546525 35.0 32.0 38.0 23.0 40.0 30 33.14561777998272 35.0 31.0 38.0 22.0 40.0 31 32.855015416484434 35.0 31.0 38.0 21.0 40.0 32 32.49888991157734 35.0 31.0 38.0 21.0 40.0 33 32.1239643466145 35.0 31.0 38.0 20.0 40.0 34 31.88566343105448 35.0 31.0 38.0 18.0 40.0 35 31.735530590352347 35.0 30.0 38.0 17.0 40.0 36 31.18518929528062 35.0 29.0 38.0 15.0 40.0 37 30.955696556005975 35.0 28.0 38.0 15.0 40.0 38 30.466209575700343 35.0 26.0 37.0 12.0 40.0 39 29.542709573161755 34.0 24.0 37.0 10.0 40.0 40 28.701524386042404 33.0 22.0 36.0 9.0 40.0 41 27.69003618576374 33.0 18.0 35.0 8.0 39.0 42 26.78543923743707 33.0 16.0 35.0 8.0 39.0 43 25.925139930616755 33.0 12.0 35.0 8.0 39.0 44 25.188675865060247 31.0 10.0 35.0 8.0 38.0 45 24.820204842321026 31.0 10.0 35.0 8.0 38.0 46 24.33816970680755 30.0 10.0 35.0 8.0 38.0 47 23.79292299591142 28.0 9.0 35.0 8.0 37.0 48 23.366236339674728 27.0 9.0 35.0 8.0 36.0 49 22.985232668875963 27.0 9.0 35.0 8.0 36.0 50 22.451662013796867 24.0 9.0 34.0 8.0 35.0 51 22.036653589310077 23.0 9.0 34.0 8.0 35.0 52 21.433104207601403 22.0 8.0 34.0 8.0 35.0 53 21.150792148363806 21.0 8.0 33.0 8.0 35.0 54 20.791078530142837 20.0 8.0 33.0 8.0 35.0 55 20.404204917753365 20.0 8.0 33.0 7.0 35.0 56 19.84207369304405 18.0 8.0 33.0 7.0 35.0 57 19.223475559559272 15.0 8.0 33.0 6.0 35.0 58 18.66004965478825 13.0 8.0 33.0 6.0 35.0 59 17.87329325264974 10.0 8.0 31.0 6.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 15.0 14 65.0 15 271.0 16 922.0 17 2626.0 18 5717.0 19 10749.0 20 17890.0 21 26732.0 22 37616.0 23 50626.0 24 64933.0 25 80480.0 26 96142.0 27 104644.0 28 91933.0 29 70699.0 30 64367.0 31 69940.0 32 77828.0 33 87651.0 34 99585.0 35 103072.0 36 105207.0 37 74474.0 38 32594.0 39 1937.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.26213898553657 21.278737726831938 38.65080556661655 3.808317721014942 2 22.000494662073997 22.944341812943755 35.45247436207088 19.602689162911368 3 19.443991125095106 23.348485079265608 37.350177955043776 19.857345840595507 4 15.725321838605256 20.25343815527312 36.22406016019218 27.79717984592945 5 0.0 100.0 0.0 0.0 6 0.0 0.0 0.0 100.0 7 100.0 0.0 0.0 0.0 8 0.0 0.0 100.0 0.0 9 0.0 0.0 100.0 0.0 10 100.0 0.0 0.0 0.0 11 99.40531754476439 0.3208775682354417 0.18212558179005295 0.09167930521012621 12 98.7230175256887 0.7274868918176945 0.1993154515169516 0.35018013097665296 13 92.80890449758073 4.775012167091336 1.255150614447179 1.1609327208807596 14 39.16613900294404 39.55534086351171 11.036331551244308 10.242188582299946 15 24.471193912610183 56.605007982047105 12.882465535036507 6.041332570306205 16 31.759118428048065 48.71101362931823 12.403470177751958 7.126397764881749 17 16.371936558501044 51.83746651783285 18.408827324494695 13.381769599171406 18 16.01007892108544 54.963556750868015 17.720652286651596 11.305712041394948 19 20.63038226063469 52.390516124025275 19.03890495452663 7.940196660813408 20 15.659826259012895 55.15968083416563 19.803382705250307 9.377110201571169 21 18.926481755890794 52.55886079759545 14.272596518942585 14.242060927571174 22 19.752248282644977 59.03044782874538 12.475130900495316 8.742172988114328 23 14.253230716338864 55.45306911705721 14.587961723890075 15.705738442713852 24 18.62489745916318 58.43424222049598 10.846445142193586 12.094415178147251 25 18.848220703421074 50.98624157641986 18.080333991190372 12.085203728968702 26 18.86004327205181 52.38667197594289 18.109273898452113 10.64401085355319 27 21.551672240681384 55.0276017085425 14.86452279253423 8.55620325824189 28 23.453727699407928 55.14727801676774 13.665511246309073 7.733483037515258 29 26.33234183325246 53.858255380538026 10.661345785471877 9.14805700073764 30 27.47158775646089 55.90769402612135 9.211231585261391 7.409486632156372 31 20.01974296430237 60.747839117325576 11.356411277424915 7.87600664094714 32 17.752420906653203 64.65733771711277 10.460942367516514 7.1292990087175125 33 16.047287373279108 67.2059353646392 8.691111096604892 8.055666165476794 34 13.428116969447727 69.37367222762579 9.012061195936226 8.186149606990258 35 15.592662464214971 67.63386883041433 9.261132979236523 7.512335726134187 36 11.99250898841606 67.01728198421868 12.655225611600333 8.334983415764924 37 13.269926649302722 67.8352151526163 10.915857400964228 7.979000797116743 38 14.66382925019529 65.71527628182392 11.656109765659282 7.964784702321502 39 14.365653914974697 64.2509459868182 12.117842722121042 9.265557376086063 40 17.235999503887303 63.41074577198109 10.621598744921917 8.731655979209686 41 17.98655128419932 61.98993413451181 9.964031829546121 10.05948275174274 42 19.62510127154264 58.70543598804397 9.815923331730396 11.853539408682987 43 21.109377617919243 57.49880867674994 11.211349085636739 10.180464619694078 44 20.559446848850275 55.15641693485039 13.576443060551135 10.707693155748197 45 21.083846672164526 54.675173113593125 12.836916006815022 11.404064207427329 46 22.79325954019637 55.064810160736165 11.197423115225074 10.944507183842394 47 22.77106502485278 54.462004222760406 11.935354484851517 10.831576267535299 48 22.390494364696504 54.48702745084386 10.919121300279462 12.20335688418017 49 21.44345584560741 54.5159673581056 11.112489201933098 12.92808759435389 50 20.92319029475912 54.90930349113924 11.883277157999563 12.284229056102077 51 20.915574529690243 54.99626827511624 11.592935181135534 12.495222014057978 52 20.903534367771822 53.36765504791041 12.623166867215147 13.105643717102614 53 19.913920095392896 52.89526002035223 13.141691671761976 14.049128212492901 54 19.93328589799662 51.92319827317967 13.497819352601944 14.645696476221767 55 19.577883528115592 50.187964335009525 14.452038450184556 15.782113686690327 56 20.079218462935522 47.94319944818342 14.99050930610226 16.987072782778796 57 20.47226447158558 45.44406800805675 16.179366498902244 17.904301021455424 58 20.915647060786135 43.212213656299795 17.1084898373055 18.763649445608568 59 21.898588472342805 39.66362978968158 19.688275856066394 18.74950588190922 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 1.5 5 3.0 6 6.5 7 10.0 8 290.5 9 1899.5 10 3228.0 11 7681.0 12 12134.0 13 15321.0 14 17849.0 15 17190.0 16 13737.0 17 10284.0 18 9423.0 19 10523.5 20 12485.0 21 14458.5 22 16432.0 23 20431.5 24 24431.0 25 31840.5 26 51194.5 27 63139.0 28 73045.5 29 82952.0 30 91205.5 31 102954.5 32 106450.0 33 105382.0 34 104314.0 35 99706.5 36 89831.5 37 84564.0 38 78043.5 39 71523.0 40 68835.5 41 66148.0 42 62543.5 43 56969.5 44 55000.0 45 54342.0 46 53684.0 47 51272.5 48 46855.0 49 44849.0 50 42280.0 51 39711.0 52 39252.0 53 36290.0 54 33787.0 55 29794.5 56 25802.0 57 21574.5 58 14387.0 59 11427.0 60 8575.5 61 5724.0 62 5018.5 63 4313.0 64 3400.0 65 1517.5 66 548.0 67 413.0 68 278.0 69 218.5 70 124.0 71 89.0 72 75.0 73 61.0 74 44.5 75 37.0 76 46.0 77 36.5 78 27.0 79 18.5 80 10.0 81 7.5 82 3.0 83 1.0 84 2.0 85 3.0 86 2.0 87 1.0 88 1.0 89 1.0 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 1378719.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 69.84650076307878 #Duplication Level Percentage of deduplicated Percentage of total 1 94.0807276577416 65.71209616137456 2 2.831423921295075 3.9553010615867197 3 0.8435510944460083 1.7675727648575719 4 0.4384396031386486 1.2249388830075032 5 0.25844471766791133 0.9025729584902725 6 0.19002234445747768 0.7963437496290742 7 0.1526450066298786 0.7463203700437787 8 0.11928784186256769 0.6665470670143885 9 0.10317541704817453 0.6485797661027665 >10 0.898411301701333 12.396385132179603 >50 0.042158842362568574 1.9398379675494883 >100 0.03554056731934204 5.619315594819384 >500 0.0046819674222653125 2.2023989195144305 >1k 0.0014897169070844176 1.4217896038305624 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TTTCACGTTGGGGGATGCTGAAACTGAAACTCCAGTACTTTGGCCACCTGATGCAAAGA 3173 0.23014116727193865 No Hit GACCACGTTGGGGAGGTACTGGAGGGAGAGACGTGGGCACAAAGGTCGCGGGAGGAACA 1922 0.1394047663084356 No Hit TACCACGTTGGGGGGAATTGTGAAGTGATGAGCTAAACTGGGTGAGTTGGAGATTCTAA 1393 0.10103581658046346 No Hit GGCGACGTTGGGGTTAAGTACAACTACGACTGCCCCCTTGAGACAAGGCCTGAGCTCTG 1389 0.10074569219688712 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.006962985205832371 0.0 0.0 0.0 0.0 12 0.04576712150916902 0.0 0.0 0.0 0.0 13 0.2202769382303428 0.0 0.0 0.0 0.0 14 0.5975836990713844 0.0 0.0 0.0 0.0 15 1.0810034532054755 0.0 0.0 0.0 0.0 16 1.3738840184257997 0.0 0.0 0.0 0.0 17 1.5454925913112099 0.0 0.0 0.0 0.0 18 1.7724423903638087 0.0 0.0 0.0 0.0 19 1.9732809948945362 0.0 0.0 0.0 0.0 20 2.1667214276440667 0.0 0.0 0.0 0.0 21 2.3414488376529228 0.0 0.0 0.0 0.0 22 2.5483075231428596 0.0 0.0 0.0 0.0 23 2.764232595619557 0.0 0.0 0.0 0.0 24 3.00634139371402 0.0 0.0 0.0 0.0 25 3.260127698247431 0.0 0.0 0.0 0.0 26 3.53233690113794 0.0 0.0 0.0 0.0 27 3.8043285107407674 0.0 0.0 0.0 0.0 28 4.074071656370878 0.0 0.0 0.0 0.0 29 4.365284006385638 0.0 0.0 0.0 0.0 30 4.672018010921732 0.0 0.0 0.0 0.0 31 4.955687126963507 0.0 0.0 0.0 0.0 32 5.198883891496382 0.0 0.0 0.0 0.0 33 5.425978752740769 0.0 0.0 0.0 0.0 34 5.635448557682893 0.0 0.0 0.0 0.0 35 5.83432882262448 0.0 0.0 0.0 0.0 36 6.025085604825929 0.0 0.0 0.0 0.0 37 6.215189607164332 0.0 0.0 0.0 0.0 38 6.399636184022995 0.0 0.0 0.0 0.0 39 6.5835025121145065 0.0 0.0 0.0 0.0 40 6.772591079110391 0.0 0.0 0.0 0.0 41 6.958995995558196 0.0 0.0 0.0 0.0 42 7.1533793325543495 0.0 0.0 0.0 0.0 43 7.35320250174256 0.0 0.0 0.0 0.0 44 7.558828158602297 0.0 0.0 0.0 0.0 45 7.761117385050906 0.0 0.0 0.0 0.0 46 7.9570964061567295 0.0 0.0 0.0 0.0 47 8.141252858631818 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGTA 110 0.0 53.000004 29 TTAGGAT 55 0.0 53.000004 45 CTGGTCA 55 0.0 53.000004 38 TCACTCC 110 0.0 53.000004 22 TTACACC 55 0.0 53.000004 31 CCTGAGC 155 0.0 53.000004 49 TACACCT 55 0.0 53.000004 32 TTCCTTA 55 0.0 53.000004 27 CTTACAC 55 0.0 53.000004 30 ACAACTG 80 0.0 53.0 25 GTGCATT 40 1.6007107E-9 53.0 23 GTCATGT 40 1.6007107E-9 53.0 25 CATGGCT 50 3.6379788E-12 53.0 40 TTAGGCT 50 3.6379788E-12 53.0 28 CTGTCTG 40 1.6007107E-9 53.0 23 GATACTC 50 3.6379788E-12 53.0 16 ACTATAC 95 0.0 53.0 45 TCTGACC 40 1.6007107E-9 53.0 52 TACCCGT 40 1.6007107E-9 53.0 39 GATGTTT 20 3.1384645E-4 53.0 32 >>END_MODULE