##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528053_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16462336 Sequences flagged as poor quality 0 Sequence length 52 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.48194436075172 31.0 31.0 34.0 30.0 34.0 2 31.966155350006222 31.0 31.0 34.0 30.0 34.0 3 32.12385581244363 33.0 31.0 34.0 30.0 34.0 4 35.78615914533636 37.0 35.0 37.0 35.0 37.0 5 35.73737141557553 37.0 35.0 37.0 35.0 37.0 6 35.82000494947983 37.0 35.0 37.0 35.0 37.0 7 35.8764406825374 37.0 35.0 37.0 35.0 37.0 8 35.834334811292884 37.0 35.0 37.0 33.0 37.0 9 37.00904549633782 39.0 37.0 39.0 33.0 39.0 10 37.49953597107968 39.0 37.0 39.0 35.0 39.0 11 37.663451711834824 39.0 37.0 39.0 35.0 39.0 12 37.502045639209406 39.0 37.0 39.0 35.0 39.0 13 37.459396770907844 39.0 37.0 39.0 35.0 39.0 14 38.11395885735779 40.0 38.0 40.0 34.0 40.0 15 37.382772590718595 39.0 37.0 40.0 32.0 40.0 16 36.98051121055967 39.0 36.0 40.0 32.0 40.0 17 36.82454179042391 39.0 36.0 40.0 31.0 40.0 18 36.95566583017137 39.0 36.0 40.0 32.0 40.0 19 37.05475510887398 39.0 36.0 40.0 32.0 40.0 20 37.162210454215 39.0 36.0 40.0 32.0 40.0 21 37.018852913705565 39.0 36.0 40.0 31.0 40.0 22 37.10705558433506 39.0 36.0 40.0 32.0 40.0 23 37.1194600814854 39.0 36.0 40.0 32.0 40.0 24 37.063274798910676 39.0 36.0 40.0 32.0 40.0 25 37.15232759190433 39.0 36.0 40.0 32.0 40.0 26 37.037545765072466 39.0 36.0 40.0 32.0 40.0 27 36.90465715193761 39.0 35.0 40.0 31.0 40.0 28 36.89045588669798 39.0 35.0 40.0 31.0 40.0 29 36.96774528232202 39.0 35.0 40.0 31.0 40.0 30 36.947969231098185 39.0 35.0 40.0 31.0 40.0 31 36.94251307955323 39.0 35.0 40.0 31.0 40.0 32 36.907549208083225 39.0 35.0 40.0 31.0 40.0 33 36.817189310192674 39.0 35.0 40.0 31.0 40.0 34 36.73205534135617 39.0 35.0 40.0 31.0 40.0 35 36.696964148951885 39.0 35.0 40.0 31.0 40.0 36 36.68142850443582 39.0 35.0 40.0 31.0 40.0 37 36.561358485211336 39.0 35.0 40.0 31.0 40.0 38 36.3426905513288 39.0 35.0 40.0 31.0 40.0 39 36.22221008002752 38.0 35.0 40.0 30.0 40.0 40 36.20889173930115 38.0 35.0 40.0 30.0 40.0 41 36.11958393997061 38.0 35.0 40.0 30.0 40.0 42 36.02299588588156 38.0 35.0 40.0 30.0 40.0 43 35.84261146170264 38.0 35.0 40.0 30.0 40.0 44 35.64750136311153 38.0 34.0 40.0 30.0 40.0 45 35.53077564447719 37.0 34.0 40.0 29.0 40.0 46 35.423522093097844 37.0 34.0 40.0 29.0 40.0 47 35.18245108106164 37.0 34.0 40.0 29.0 40.0 48 35.06197437593304 37.0 34.0 40.0 28.0 40.0 49 34.99304940683995 36.0 34.0 40.0 28.0 40.0 50 34.89562331858613 36.0 34.0 39.0 28.0 40.0 51 34.74322009950471 36.0 34.0 39.0 28.0 40.0 52 33.790260628868225 35.0 33.0 38.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 5.0 13 12.0 14 28.0 15 84.0 16 273.0 17 787.0 18 2040.0 19 4409.0 20 8578.0 21 15440.0 22 25550.0 23 39202.0 24 58456.0 25 83977.0 26 117249.0 27 158677.0 28 211092.0 29 277488.0 30 357315.0 31 453992.0 32 568265.0 33 726953.0 34 1047155.0 35 1646759.0 36 1619936.0 37 2698768.0 38 4862070.0 39 1477773.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.207532150965697 20.202406268466394 34.844696402746244 18.745365177821665 2 22.45536720912512 22.51438677961621 36.19004010123472 18.840205910023947 3 24.119985158849875 21.322891234876995 36.42810473556122 18.129018870711906 4 26.040982276148416 21.846042991711503 38.30930798642429 13.803666745715795 5 0.0 0.0 0.0 100.0 6 0.0 100.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 100.0 0.0 0.0 0.0 9 0.0 100.0 0.0 0.0 10 0.0 0.0 100.0 0.0 11 99.57956756562373 0.3261444791310298 0.04285540035144465 0.051432554893789076 12 99.59649711924237 0.2766739787111623 0.08920362213479302 0.03762527991167232 13 98.78031890492333 0.6309189655708644 0.2043695378347277 0.38439259167107265 14 65.65264492232451 22.248416020666813 4.210738986253227 7.888200070755451 15 35.48749096118558 26.21030818469505 16.331369982972042 21.970830871147324 16 30.597735339626166 17.383772266584767 26.05330130547694 25.965191088312135 17 24.97734221923304 17.198027060072153 29.1979157757441 28.626714944950706 18 25.32779673553012 16.979309619242372 31.356673803766366 26.33621984146114 19 26.20490190456567 17.4694769928156 28.11334916259758 28.21227194002115 20 29.680836304155132 17.1999040719373 24.407471697819798 28.711787926087766 21 31.09490050500731 18.459123905623116 21.284470199126055 29.161505390243526 22 29.914448350464962 20.548189515752806 21.42494843988119 28.112413693901033 23 29.62879022758374 20.70813036497372 20.32993373479924 29.3331456726433 24 29.54612273738065 22.874937068469507 20.800213286862814 26.77872690728703 25 32.11477399076291 19.835514230787172 22.312926913896057 25.73678486455385 26 31.10223239277828 18.756663695844868 22.506453519111748 27.634650392265108 27 31.745312451404224 20.11178121987062 21.11109261771841 27.03181371100675 28 30.694574573134698 19.580161648990764 21.107854924112836 28.6174088537617 29 29.32577126356794 19.619378440580974 21.555646780627 29.49920351522409 30 28.915118729201005 20.383607769881504 21.582896862267905 29.11837663864958 31 29.013300421033804 19.516592298930117 21.163533534973407 30.30657374506267 32 29.68948027789009 21.433294764485428 20.218127002145987 28.65909795547849 33 30.083306524663328 22.043463333514758 20.188793376590052 27.68443676523186 34 29.064216645802883 21.90770495754673 21.831974514431003 27.19610388221939 35 31.76704691241875 22.321959653842566 18.907541432758997 27.00345200097969 36 34.65550089610612 21.489356067085495 19.536461897023607 24.31868113978478 37 33.61210705455168 21.238298137032313 20.474822042266663 24.674772766149346 38 30.53394730857152 22.9599918261904 23.713779138027554 22.792281727210526 39 30.063856065141664 24.857632598435604 23.193804330078063 21.884707006344666 40 31.010477492380183 25.070269492737847 19.323515204646533 24.595737810235438 41 30.45932849384194 25.504812925699 18.93746428210431 25.09839429835474 42 32.60986776117314 23.867845972770816 17.949129455260785 25.57315681079526 43 32.451160029779494 22.426446647668957 18.443342427222966 26.679050895328587 44 30.051202939850093 22.444414936009082 19.587044025829627 27.917338098311202 45 27.572490319721332 22.686373306923148 20.895509604469257 28.845626768886262 46 27.550184858333594 19.800865442182687 22.77026176600939 29.878687933474325 47 26.92240032034336 18.409361830544587 24.627677384303176 30.04056046480888 48 27.511812418359092 18.850325980468384 23.372430255341648 30.265431345830873 49 28.600424629894565 19.538059483174198 22.951985672021273 28.909530214909964 50 27.074098110984977 22.207273621435014 22.367111204630984 28.35151706294903 51 27.888952090395918 21.807409349438622 22.39040073049171 27.913237829673747 52 28.888482169237705 20.89346250738656 23.634580171368146 26.58347515200759 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.0 4 2.0 5 5.0 6 8.0 7 10.5 8 13.0 9 605.0 10 1197.0 11 1955.5 12 2714.0 13 4858.5 14 9582.5 15 12162.0 16 12204.0 17 12246.0 18 12515.5 19 12785.0 20 15102.0 21 17419.0 22 23464.5 23 29510.0 24 36692.0 25 43874.0 26 54797.0 27 65720.0 28 70005.5 29 74291.0 30 75671.0 31 77051.0 32 93218.5 33 109386.0 34 117540.5 35 125695.0 36 146152.5 37 166610.0 38 185110.0 39 231979.5 40 260349.0 41 284350.0 42 308351.0 43 368551.0 44 428751.0 45 454134.5 46 479518.0 47 550133.5 48 620749.0 49 685168.0 50 749587.0 51 827970.5 52 906354.0 53 1062776.0 54 1219198.0 55 1414693.0 56 1610188.0 57 1771618.5 58 1933049.0 59 1907484.5 60 1881920.0 61 1728137.5 62 1574355.0 63 1382566.0 64 1002883.0 65 814989.0 66 695769.0 67 576549.0 68 493901.5 69 411254.0 70 339364.0 71 267474.0 72 215269.5 73 163065.0 74 114829.5 75 66594.0 76 43319.5 77 20045.0 78 17113.5 79 14182.0 80 8579.5 81 2977.0 82 1704.5 83 432.0 84 325.5 85 219.0 86 159.5 87 100.0 88 57.0 89 7.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1.6462336E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 4.897894503386119 #Duplication Level Percentage of deduplicated Percentage of total 1 74.92307649605529 3.6696532454680693 2 8.723173564140831 0.8545036770377696 3 3.669595650013767 0.5391987709155612 4 2.236637801031122 0.438192639669438 5 1.661491508637589 0.4068905063789379 6 1.1809823894250928 0.347059629225658 7 0.8963424195383854 0.3073133426866211 8 0.6829060291213466 0.2675841349090147 9 0.521499045287826 0.22988225766927167 >10 2.42967609923145 2.1308057407839995 >50 0.2891049257278371 1.0177590574326993 >100 1.2196071393679522 18.059008334322872 >500 1.0816347689388102 37.772379837072954 >1k 0.4838892387357827 33.84264854105487 >5k 3.829247470871401E-4 0.11712028537229396 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.006724440565421578 0.0 0.0 0.0 0.0 12 0.01211249727863652 0.0 0.0 0.0 0.0 13 0.01972988523621435 0.0 0.0 0.0 0.0 14 0.04764208433116661 0.0 0.0 0.0 0.0 15 0.06627856459739372 0.0 0.0 0.0 0.0 16 0.07944194554162909 0.0 0.0 0.0 0.0 17 0.08823778107797095 0.0 0.0 0.0 0.0 18 0.09893492636767953 0.0 0.0 0.0 0.0 19 0.1089213584268964 0.0 0.0 0.0 0.0 20 0.12100955781731099 0.0 0.0 0.0 0.0 21 0.13354119366777595 0.0 0.0 0.0 0.0 22 0.1458845208845209 0.0 0.0 0.0 0.0 23 0.15782693294560382 0.0 0.0 0.0 0.0 24 0.16955066401268934 0.0 0.0 0.0 0.0 25 0.18318177930519702 0.0 0.0 0.0 0.0 26 0.19764509726930612 0.0 0.0 0.0 0.0 27 0.21167712771747582 0.0 0.0 0.0 0.0 28 0.22532646642614998 0.0 0.0 0.0 0.0 29 0.242596190479893 0.0 0.0 0.0 0.0 30 0.26360778931981466 0.0 0.0 0.0 0.0 31 0.2804037045532299 0.0 0.0 0.0 0.0 32 0.29634311922682177 0.0 0.0 0.0 0.0 33 0.3088504571890648 0.0 0.0 0.0 0.0 34 0.3215886250894162 0.0 0.0 0.0 0.0 35 0.3349281657232607 0.0 0.0 0.0 0.0 36 0.34824340846888313 0.0 0.0 0.0 0.0 37 0.36004610767268996 0.0 0.0 0.0 0.0 38 0.37272353085248655 0.0 0.0 0.0 0.0 39 0.38705321043137497 0.0 0.0 0.0 0.0 40 0.40358792336640437 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAATAC 30 1.8629253E-6 46.0 42 CGACTAA 30 1.8629253E-6 46.0 25 CGCATGA 84470 0.0 45.109623 3 TTCATGA 245450 0.0 45.021713 3 ATGGGGC 253830 0.0 44.937122 9 TCATGAT 644270 0.0 44.933662 4 TTCGCAT 10240 0.0 44.921875 1 TACGCAT 6775 0.0 44.913654 1 TGATGGG 1655595 0.0 44.90223 7 CATGATG 1679590 0.0 44.89778 5 CGGCATG 19430 0.0 44.863617 2 ATGATGG 1675400 0.0 44.85549 6 CACATGA 80935 0.0 44.85476 3 GATGGGG 1095975 0.0 44.850605 8 TTTCATG 92715 0.0 44.81918 2 GTCATGA 144380 0.0 44.72877 3 ATGGGAG 159445 0.0 44.72627 9 GCATGAT 443020 0.0 44.65225 4 ATGGGGA 316875 0.0 44.65212 9 ACATGAT 371640 0.0 44.64342 4 >>END_MODULE