##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528043_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4008999 Sequences flagged as poor quality 0 Sequence length 52 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.776062802709603 31.0 31.0 34.0 30.0 34.0 2 32.18181321571794 34.0 31.0 34.0 30.0 34.0 3 32.38013229736401 34.0 31.0 34.0 30.0 34.0 4 35.92302243028746 37.0 35.0 37.0 35.0 37.0 5 35.82233794520777 37.0 35.0 37.0 35.0 37.0 6 36.06688652204703 37.0 35.0 37.0 35.0 37.0 7 36.066756314980374 37.0 36.0 37.0 35.0 37.0 8 36.09122626371321 37.0 36.0 37.0 35.0 37.0 9 38.07446646906123 39.0 39.0 39.0 35.0 39.0 10 37.77063301836693 39.0 38.0 39.0 35.0 39.0 11 37.99842903428013 39.0 37.0 39.0 35.0 39.0 12 37.96629881923143 39.0 37.0 39.0 35.0 39.0 13 38.04999776752252 39.0 39.0 39.0 37.0 39.0 14 38.783270586996906 40.0 39.0 40.0 36.0 40.0 15 38.2511781619302 40.0 38.0 40.0 35.0 40.0 16 37.62858983002989 40.0 36.0 40.0 33.0 40.0 17 37.565702061786496 40.0 37.0 40.0 33.0 40.0 18 37.59723112926693 40.0 37.0 40.0 33.0 40.0 19 37.73067965344965 40.0 37.0 40.0 33.0 40.0 20 37.743029369675575 40.0 37.0 40.0 33.0 40.0 21 37.70862003208282 40.0 37.0 40.0 33.0 40.0 22 37.69614409981145 40.0 37.0 40.0 33.0 40.0 23 37.60126355731194 40.0 37.0 40.0 33.0 40.0 24 37.58098293364503 40.0 37.0 40.0 33.0 40.0 25 37.546911336221335 40.0 36.0 40.0 33.0 40.0 26 37.516343605972466 40.0 36.0 40.0 33.0 40.0 27 37.530803824096736 40.0 36.0 40.0 33.0 40.0 28 37.35387013067352 40.0 36.0 40.0 33.0 40.0 29 37.47838575165521 40.0 36.0 40.0 33.0 40.0 30 37.50783549709042 40.0 36.0 40.0 33.0 40.0 31 37.51818646001159 40.0 36.0 40.0 33.0 40.0 32 37.4577708799628 40.0 36.0 40.0 33.0 40.0 33 37.37337574791114 40.0 36.0 40.0 33.0 40.0 34 37.29217991822897 40.0 35.0 40.0 33.0 40.0 35 37.128542561372555 40.0 35.0 40.0 33.0 40.0 36 36.682583108651315 39.0 35.0 40.0 31.0 40.0 37 36.756771702861485 39.0 35.0 40.0 31.0 40.0 38 36.66866716604319 39.0 35.0 40.0 31.0 40.0 39 36.579122868326984 39.0 35.0 40.0 31.0 40.0 40 36.46997342728197 39.0 35.0 40.0 31.0 40.0 41 36.356446584296975 38.0 35.0 40.0 31.0 40.0 42 36.05721403272987 38.0 35.0 40.0 31.0 40.0 43 35.87667021119237 38.0 35.0 40.0 30.0 40.0 44 35.71568114634102 38.0 35.0 40.0 30.0 40.0 45 35.31932534779879 37.0 35.0 40.0 29.0 40.0 46 35.32176885052852 37.0 35.0 40.0 29.0 40.0 47 35.25767878714861 37.0 34.0 40.0 29.0 40.0 48 35.09785609824298 36.0 34.0 40.0 29.0 40.0 49 34.93457643666162 36.0 34.0 40.0 28.0 40.0 50 34.7160191359489 36.0 34.0 40.0 28.0 40.0 51 34.6291036740094 35.0 34.0 39.0 28.0 40.0 52 34.14544827773716 35.0 33.0 39.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 4.0 14 6.0 15 21.0 16 59.0 17 166.0 18 454.0 19 919.0 20 1810.0 21 3195.0 22 5258.0 23 8318.0 24 12120.0 25 17536.0 26 23923.0 27 31970.0 28 43228.0 29 55747.0 30 71397.0 31 89167.0 32 111208.0 33 143235.0 34 217035.0 35 399644.0 36 347584.0 37 675630.0 38 1190168.0 39 559195.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.18307063683478 18.568126357726705 35.21320409408932 16.03559891134919 2 24.574039554512236 22.24375710744752 35.987636814077526 17.194566523962713 3 22.075959609867702 22.222280424614723 36.4484750432714 19.253284922246177 4 22.600554402732453 22.445154014755303 35.76907851560951 19.185213066902733 5 0.0 0.0 100.0 0.0 6 0.0 0.0 100.0 0.0 7 0.0 0.0 0.0 100.0 8 0.0 100.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 100.0 0.0 0.0 11 99.6157893778472 0.3013470444866661 0.05036169876819625 0.03250187889794934 12 99.4140183123019 0.4971315782318729 0.06066352224083867 0.028186587225389678 13 98.47977013713398 0.92297354027776 0.2534049023210033 0.34385142026725374 14 66.98230655582603 21.821856278836687 3.801397805287554 7.394439360049729 15 36.34144084346242 23.809609331406666 17.10304741906895 22.745902406061962 16 30.98314566803334 15.335748400037016 28.430812778950553 25.250293152979086 17 23.249993327511433 15.476406953456461 30.13969322516668 31.133906493865425 18 23.59925757028126 17.446175466743693 32.588708552933035 26.36585841004201 19 25.688906382865152 16.714172290888573 30.039144434807792 27.557776891438486 20 29.080151928199534 17.176357489737462 25.847225205094837 27.896265376968167 21 32.84984605882915 17.406539637450646 21.784041352966163 27.95957295075404 22 31.987186826437224 18.649692853502835 21.8734901156124 27.489630204447547 23 29.766283304136522 20.121257201610675 21.022629339643135 29.08983015460967 24 30.180750855762252 21.34829666956764 21.22874064074349 27.24221183392662 25 31.838371623440164 19.92330255008794 21.646750223684265 26.591575602787625 26 30.600656173773054 19.39588909850065 22.13033727371845 27.873117454007847 27 31.25149195597205 21.098458742444187 20.707238889308776 26.942810412274987 28 31.621559396747166 19.865806900924646 19.220034726873216 29.29259897545497 29 30.380351803530008 20.24373166468737 19.677106429809534 29.698810101973088 30 29.92712145849874 18.827293296905285 20.24869549730494 30.996889747291036 31 28.414225097087826 18.098033948125206 20.994966573950254 32.492774380836714 32 30.767730298760366 21.454931767256614 19.14944353939724 28.62789439458578 33 32.86680789892939 20.60629099682988 19.494093163904505 27.03280794033623 34 29.641563891634792 20.613873937109986 20.807687904137666 28.936874267117553 35 32.13577753449178 21.91327560820045 19.17758023885763 26.77336661845014 36 35.03363308396934 20.579850481379516 19.723102949140173 24.663413485510972 37 34.070275397923524 20.48089809950065 20.604270542347354 24.844555960228476 38 31.840816123925197 22.712502547394 22.183866845564193 23.26281448311661 39 31.24702700100449 24.67558610017114 22.175236262219073 21.902150636605295 40 31.66079612392021 24.24453086668268 19.84008975806679 24.25458325133032 41 31.591776401041756 24.756329447824758 18.93233198611424 24.719562165019248 42 33.05161712437444 23.906092268918 18.82554722513026 24.216743381577295 43 32.475737709088975 22.73358012810679 18.061765542969706 26.728916619834525 44 30.85500894362907 23.95366025284616 18.56720343407419 26.62412736945058 45 29.245430093646817 23.650816575409472 20.589852978262154 26.513900352681553 46 29.03784710347895 22.010606637716794 20.864335461295948 28.087210797508305 47 29.709885185803238 19.687732523754683 22.71896301296159 27.88341927748049 48 29.49851072549532 18.677205955900714 21.944031415323376 29.880251903280598 49 30.35909961563971 19.839915150889286 21.913525047025452 27.887460186445544 50 30.0326340814752 21.45740121162415 20.296986853825604 28.212977853075046 51 28.11422502225618 21.154058656537455 22.62205602944775 28.109660291758615 52 30.21632083220774 20.684564900115966 22.299556572600792 26.799557695075503 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 2.5 4 5.0 5 7.5 6 10.0 7 84.5 8 159.0 9 258.5 10 358.0 11 540.0 12 722.0 13 1114.0 14 1743.0 15 1980.0 16 2572.5 17 3165.0 18 3944.0 19 4723.0 20 6772.5 21 8822.0 22 11758.0 23 14694.0 24 18074.0 25 21454.0 26 22343.5 27 23233.0 28 23661.0 29 24089.0 30 24913.5 31 25738.0 32 27535.5 33 29333.0 34 32104.5 35 34876.0 36 39555.5 37 44235.0 38 51792.0 39 67239.5 40 75130.0 41 87122.0 42 99114.0 43 115836.0 44 132558.0 45 141723.5 46 150889.0 47 170258.5 48 189628.0 49 208775.5 50 227923.0 51 258828.0 52 289733.0 53 314240.5 54 338748.0 55 371056.0 56 403364.0 57 401883.5 58 400403.0 59 375397.0 60 350391.0 61 318239.0 62 286087.0 63 251374.0 64 198525.5 65 180390.0 66 160714.5 67 141039.0 68 120087.0 69 99135.0 70 78232.5 71 57330.0 72 49258.0 73 41186.0 74 29122.0 75 17058.0 76 12847.0 77 8636.0 78 5539.5 79 2443.0 80 2176.5 81 1910.0 82 1218.5 83 527.0 84 379.5 85 232.0 86 130.0 87 28.0 88 16.5 89 2.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 4008999.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.211845904136512 #Duplication Level Percentage of deduplicated Percentage of total 1 73.48758057634721 6.034686875607789 2 8.604558732066696 1.4131862076164794 3 4.059317351271521 1.0000346569388796 4 2.360923068951552 0.7755014573500485 5 1.4687916719685994 0.6030745437742582 6 0.9848677786793393 0.4852549460678375 7 0.6546615965309218 0.37631861050475446 8 0.46006568916182256 0.30223908361418034 9 0.3452427589492087 0.25515723024088643 >10 2.529294308982241 4.58870258404027 >50 1.1539671789443442 7.080950527786549 >100 3.6663733656925888 64.69541820170276 >500 0.21236502927088358 11.085222972938093 >1k 0.011990893183199965 1.3042521018172093 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTCGTTCATAGGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCC 4625 0.11536545656409493 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.019830386587774154 0.0 0.0 0.0 0.0 11 0.021102524595291744 0.0 0.0 0.0 0.0 12 0.02763782181038209 0.0 0.0 0.0 0.0 13 0.0327014299579521 0.0 0.0 0.0 0.0 14 0.04824146875566694 0.0 0.0 0.0 0.0 15 0.06772264098843626 0.0 0.0 0.0 0.0 16 0.07937143411609732 0.0 0.0 0.0 0.0 17 0.08979797700124145 0.0 0.0 0.0 0.0 18 0.10224497436891354 0.0 0.0 0.0 0.0 19 0.1166874823366132 0.0 0.0 0.0 0.0 20 0.129982571709297 0.0 0.0 0.0 0.0 21 0.14467451850200014 0.0 0.0 0.0 0.0 22 0.16492895109228015 0.0 0.0 0.0 0.0 23 0.18328764861253397 0.0 0.0 0.0 0.0 24 0.20207039213529362 0.0 0.0 0.0 0.0 25 0.2224744880205757 0.0 0.0 0.0 0.0 26 0.24726870722591848 0.0 0.0 0.0 0.0 27 0.27188831925375884 0.0 0.0 0.0 0.0 28 0.2934897214990575 0.0 0.0 0.0 0.0 29 0.3224994568469586 0.0 0.0 0.0 0.0 30 0.3613620257824958 0.0 0.0 0.0 0.0 31 0.39518593045296346 0.0 0.0 0.0 0.0 32 0.4183587972957838 0.0 0.0 0.0 0.0 33 0.4398853678935814 0.0 0.0 0.0 0.0 34 0.45909215741884696 0.0 0.0 0.0 0.0 35 0.4770766967015956 0.0 0.0 0.0 0.0 36 0.49388887350682803 0.0 0.0 0.0 0.0 37 0.5109754330195643 0.0 0.0 0.0 0.0 38 0.5318784065548532 0.0 0.0 0.0 0.0 39 0.5565479063476942 0.0 0.0 0.0 0.0 40 0.5852084273405905 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAC 85 0.0 46.000004 28 TATGCGC 35 1.0204167E-7 46.000004 31 CGTTACA 85 0.0 46.000004 29 ACGTATC 55 1.8189894E-12 46.000004 29 TCGTTAG 30 1.8625706E-6 46.0 43 CGAACTT 20 6.313344E-4 46.0 20 CTATACG 45 3.110472E-10 46.0 35 CGATTAT 20 6.313344E-4 46.0 40 AACGGAC 45 3.110472E-10 46.0 21 CTACGTA 50 1.6370905E-11 46.0 27 TACGATA 20 6.313344E-4 46.0 39 AACGATA 20 6.313344E-4 46.0 18 CGAATAT 20 6.313344E-4 46.0 46 ACGTCTA 50 1.6370905E-11 46.0 23 CATAACG 45 3.110472E-10 46.0 22 CGTAAGT 40 5.6170393E-9 46.0 14 CGGTATA 25 3.418688E-5 46.0 42 TGTACGT 20 6.313344E-4 46.0 45 TACGTTG 25 3.418688E-5 46.0 21 GTACGTA 20 6.313344E-4 46.0 32 >>END_MODULE