##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528034_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5154698 Sequences flagged as poor quality 0 Sequence length 52 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.965157803619146 31.0 31.0 34.0 27.0 34.0 2 31.659439020481898 33.0 31.0 34.0 28.0 34.0 3 31.941412280603053 33.0 31.0 34.0 30.0 34.0 4 35.652724563107284 37.0 35.0 37.0 33.0 37.0 5 35.610801253536096 37.0 35.0 37.0 33.0 37.0 6 35.712241531899636 37.0 35.0 37.0 33.0 37.0 7 35.6671345246608 37.0 35.0 37.0 33.0 37.0 8 35.49487147452673 37.0 35.0 37.0 33.0 37.0 9 37.88751096572486 39.0 38.0 39.0 35.0 39.0 10 38.04722876102538 39.0 38.0 39.0 35.0 39.0 11 38.293107957051994 39.0 39.0 39.0 37.0 39.0 12 38.24922022589878 39.0 39.0 39.0 37.0 39.0 13 38.16982837791855 39.0 39.0 39.0 37.0 39.0 14 38.70427520681134 40.0 39.0 40.0 36.0 40.0 15 37.77236648975362 40.0 37.0 40.0 33.0 40.0 16 36.46384269262719 38.0 35.0 40.0 31.0 40.0 17 36.11518152954839 38.0 35.0 40.0 31.0 40.0 18 36.02613829170981 38.0 35.0 40.0 30.0 40.0 19 36.32716814835709 39.0 35.0 40.0 30.0 40.0 20 36.37371190319976 39.0 35.0 40.0 31.0 40.0 21 36.61556331719142 39.0 35.0 40.0 31.0 40.0 22 36.68416966425579 39.0 35.0 40.0 31.0 40.0 23 36.64959887077769 39.0 35.0 40.0 31.0 40.0 24 36.8325626447951 39.0 35.0 40.0 32.0 40.0 25 36.88752532156103 39.0 35.0 40.0 32.0 40.0 26 36.75379488769274 39.0 35.0 40.0 32.0 40.0 27 36.51362504651097 39.0 35.0 40.0 31.0 40.0 28 36.00812482127954 38.0 35.0 40.0 30.0 40.0 29 35.84820643226819 38.0 35.0 40.0 30.0 40.0 30 35.667576839613105 38.0 35.0 40.0 30.0 40.0 31 35.42833062189094 37.0 35.0 40.0 29.0 40.0 32 35.12967297017207 37.0 35.0 40.0 27.0 40.0 33 34.706212080707736 35.0 34.0 40.0 25.0 40.0 34 34.36593511394848 35.0 33.0 40.0 23.0 40.0 35 33.986335571938454 35.0 33.0 40.0 22.0 40.0 36 33.260772600063085 35.0 33.0 40.0 20.0 40.0 37 33.26886657569464 35.0 33.0 40.0 20.0 40.0 38 33.037248156924036 35.0 33.0 40.0 18.0 40.0 39 32.64302098784449 35.0 33.0 40.0 16.0 40.0 40 32.104499623450295 35.0 31.0 40.0 15.0 40.0 41 31.48246395812131 35.0 30.0 39.0 10.0 40.0 42 30.59679519537323 35.0 26.0 39.0 9.0 40.0 43 29.864776753167693 35.0 23.0 38.0 9.0 40.0 44 29.1364861724198 35.0 21.0 37.0 8.0 40.0 45 28.247791820199748 35.0 20.0 36.0 8.0 40.0 46 27.792028747367937 34.0 18.0 35.0 8.0 40.0 47 27.3238218805447 33.0 15.0 35.0 8.0 40.0 48 26.842575452528937 33.0 12.0 35.0 8.0 40.0 49 26.458046232776393 33.0 10.0 35.0 8.0 40.0 50 26.00444487727506 33.0 10.0 35.0 8.0 40.0 51 25.65083095071719 33.0 10.0 35.0 8.0 39.0 52 25.01656372497477 32.0 10.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 5.0 13 10.0 14 36.0 15 176.0 16 738.0 17 2473.0 18 5852.0 19 11600.0 20 20075.0 21 30206.0 22 41959.0 23 55825.0 24 74790.0 25 100323.0 26 131873.0 27 167865.0 28 207436.0 29 252426.0 30 293250.0 31 301682.0 32 266814.0 33 244633.0 34 283437.0 35 378628.0 36 524911.0 37 779368.0 38 806955.0 39 171349.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.690588275006604 23.567297250003783 36.33654192738353 2.405572547606087 2 30.003096204666114 21.300898714143873 31.120950247715772 17.57505483347424 3 17.99432284878765 22.63052074049731 35.323485488383604 24.051670922331432 4 14.115977308466956 25.93050068112623 32.936478528907024 27.01704348149979 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 100.0 0.0 0.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 100.0 0.0 11 99.47178282801437 0.313810818790936 0.15711880696017497 0.05728754623452237 12 99.28228579055455 0.4592121594708361 0.14617733182428924 0.11232471815031647 13 96.69431652445982 2.1306000855918232 0.557394439014662 0.6176889509336919 14 59.08524611917129 27.72125544503286 5.556659187405353 7.636839248390498 15 43.101710323281786 34.430533078756504 13.623688526466534 8.844068071495167 16 45.978076698188715 31.071577811154015 14.664331450649485 8.286014040007775 17 30.889239292001196 33.45668359232685 19.28310834116761 16.370968774504348 18 24.1040503245777 44.46008282153484 17.9445624166537 13.491304437233762 19 26.797457387416294 44.36700268376537 17.920972285864273 10.914567642954058 20 19.064395237121552 48.29074370603283 20.294302401420993 12.350558655424624 21 20.378012446121964 49.84687754743343 16.05141562124493 13.723694385199675 22 22.87517134854457 50.01526762576586 16.917363539047294 10.192197486642282 23 17.094037322846074 47.128696967310205 20.86060133881752 14.916664371026197 24 18.736694176846054 50.07032419746026 16.817260681421104 14.375720944272585 25 18.397295050068887 43.89688784871587 22.668854703030128 15.03696239818511 26 19.502849633479983 44.401010495668224 21.918219069283982 14.177920801567812 27 24.51365725014346 46.338175388742464 18.32832883711131 10.819838524002764 28 27.391653206453608 44.27529993027719 17.650442373151638 10.682604490117559 29 31.359004931035727 42.01443033132106 16.779954907154597 9.846609830488614 30 35.25552806391373 43.08993465766569 12.865351180612327 8.789186097808251 31 31.835153097232855 45.86090203538597 11.93456920269626 10.369375664684915 32 29.96284166405093 50.59118885335281 12.473262255131145 6.97270722746512 33 28.437107275731773 53.12152137719804 11.738398641394705 6.702972705675483 34 25.15189056662485 55.244536149353465 12.846397596910625 6.757175687111058 35 25.54366909564828 55.41086985115326 11.991546352473026 7.053914700725435 36 20.55711120224696 56.722702280521574 13.546322209370947 9.17386430786052 37 19.05048559585838 59.19681424595582 13.979034271260895 7.773665886924898 38 18.299423166982816 60.30298962228243 13.426586775791716 7.971000434943036 39 19.19024160096285 60.7223740362675 11.781000555221665 8.306383807547988 40 19.516041482934597 61.13908128080442 11.391200803616428 7.95367643264455 41 20.197128910364874 60.84994698040506 11.37690316678106 7.576020942449005 42 22.032755362195807 57.51101228432781 12.066177300784643 8.39005505269174 43 23.270946231961602 56.73162617868205 10.364040725567241 9.633386863789111 44 22.073320299268744 55.542070553890845 11.442513218039156 10.942095928801262 45 22.18147406501797 54.350788348803356 13.861432813328733 9.606304772849933 46 23.350853920055066 54.3436686300536 12.75653782239037 9.548939627500971 47 25.855714534585733 53.667198349932434 10.591076334636869 9.886010780844968 48 26.002609658218578 53.32114509909213 10.56550742642925 10.110737816260041 49 25.07409745439985 53.7439244743339 10.671954011660818 10.510024059605431 50 24.103313132990525 53.99598579781008 11.071376053456477 10.82932501574292 51 22.55965334923598 54.44825283653862 11.503544921545355 11.488548892680036 52 22.852066212220386 53.87642496223833 11.78270773573932 11.488801089801964 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 2.5 4 5.0 5 15.5 6 26.0 7 38.5 8 51.0 9 479.5 10 908.0 11 2059.0 12 3210.0 13 5524.0 14 11500.5 15 15163.0 16 18913.5 17 22664.0 18 28393.5 19 34123.0 20 44252.0 21 54381.0 22 71827.0 23 89273.0 24 116287.0 25 143301.0 26 177904.0 27 212507.0 28 246399.0 29 280291.0 30 304513.0 31 328735.0 32 341745.0 33 354755.0 34 356911.0 35 359067.0 36 353458.0 37 347849.0 38 337412.5 39 317274.5 40 307573.0 41 301695.0 42 295817.0 43 297115.5 44 298414.0 45 303091.0 46 307768.0 47 312151.5 48 316535.0 49 307098.0 50 297661.0 51 279535.0 52 261409.0 53 227955.0 54 194501.0 55 162545.5 56 130590.0 57 102844.0 58 75098.0 59 57912.5 60 40727.0 61 31740.0 62 22753.0 63 16949.5 64 8537.5 65 5929.0 66 4818.5 67 3708.0 68 2713.5 69 1719.0 70 1355.0 71 991.0 72 767.5 73 544.0 74 448.0 75 352.0 76 259.5 77 167.0 78 139.5 79 112.0 80 70.0 81 28.0 82 23.0 83 18.0 84 12.0 85 6.0 86 6.5 87 7.0 88 4.5 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 5154698.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.98693295842469 #Duplication Level Percentage of deduplicated Percentage of total 1 82.31233297257019 41.96853402923967 2 6.875762284168424 7.011480612419209 3 2.5857609584180805 3.9552006190012396 4 1.4461712369144148 2.9494334361182957 5 1.036151201366874 2.6415085919442007 6 0.7885489654044728 2.412341594010781 7 0.6347745446424506 2.2655645005979435 8 0.5511702695452106 2.248198526558282 9 0.4738514751754571 2.1744210057319506 >10 3.2123966442085843 28.23830982033594 >50 0.06753283464481225 2.2347972175362987 >100 0.0141273036738796 1.3230212330395703 >500 0.0011507917649088706 0.3995593741784198 >1k 2.685175023690539E-4 0.17762943928829633 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.013948440820393357 0.0 0.0 0.0 0.0 12 0.021359156249308883 0.0 0.0 0.0 0.0 13 0.035792591534945406 0.0 0.0 0.0 0.0 14 0.17525759996026927 0.0 0.0 0.0 0.0 15 0.3685375942489744 0.0 0.0 0.0 0.0 16 0.5101753778785877 0.0 0.0 0.0 0.0 17 0.634004164744472 0.0 0.0 0.0 0.0 18 0.786505824395532 0.0 0.0 0.0 0.0 19 0.9603472405172913 0.0 0.0 0.0 0.0 20 1.141521772953527 0.0 0.0 0.0 0.0 21 1.3143932001448 0.0 0.0 0.0 0.0 22 1.4811342972953994 0.0 0.0 0.0 0.0 23 1.6492333789486795 0.0 0.0 0.0 0.0 24 1.8450159446780394 0.0 0.0 0.0 0.0 25 2.061517473962587 0.0 0.0 0.0 0.0 26 2.312065614707205 0.0 0.0 0.0 0.0 27 2.5933236049910198 0.0 0.0 0.0 0.0 28 2.8838934890075034 0.0 0.0 0.0 0.0 29 3.193184159382373 0.0 0.0 0.0 0.0 30 3.5413519860911347 0.0 0.0 0.0 0.0 31 3.886183050879023 0.0 0.0 0.0 0.0 32 4.214078108940621 0.0 0.0 0.0 0.0 33 4.525910150313365 0.0 0.0 0.0 0.0 34 4.825462131826152 0.0 0.0 0.0 0.0 35 5.117021404551731 0.0 0.0 0.0 0.0 36 5.391295474536045 1.9399778609726506E-5 0.0 0.0 0.0 37 5.664987551162066 1.9399778609726506E-5 0.0 0.0 0.0 38 5.934838471623362 1.9399778609726506E-5 0.0 0.0 0.0 39 6.209384138508211 1.9399778609726506E-5 0.0 0.0 0.0 40 6.481446633731016 1.9399778609726506E-5 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGAA 115 0.0 46.000004 19 CGTAACG 115 0.0 46.000004 17 ATAACGT 110 0.0 46.000004 35 CGAACCT 20 6.3135114E-4 46.0 32 GATAAAC 20 6.3135114E-4 46.0 37 ACGTTTT 30 1.8626743E-6 46.0 32 CTATCAG 25 3.4188248E-5 46.0 22 TGAACGT 150 0.0 46.0 43 CGATTAA 40 5.6188583E-9 46.0 34 ACCCTTA 20 6.3135114E-4 46.0 32 ACCTAAC 25 3.4188248E-5 46.0 22 GGACGTA 50 1.6370905E-11 46.0 12 TACTAGA 50 1.6370905E-11 46.0 18 GTCTAGG 145 0.0 44.41379 31 TAGCGGC 130 0.0 44.23077 37 TCTATGA 105 0.0 43.809525 27 CTATGAG 100 0.0 43.7 28 ATAAGTA 100 0.0 43.7 37 ATACTAT 95 0.0 43.57895 44 TCGTTTA 90 0.0 43.444447 19 >>END_MODULE