##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528017_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4218999 Sequences flagged as poor quality 0 Sequence length 52 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.16815007540888 31.0 31.0 33.0 30.0 33.0 2 31.997420715198082 33.0 31.0 34.0 30.0 34.0 3 32.37959264745026 34.0 31.0 34.0 30.0 34.0 4 36.06601755534903 37.0 35.0 37.0 35.0 37.0 5 36.142552771403835 37.0 35.0 37.0 35.0 37.0 6 36.24817166346804 37.0 37.0 37.0 35.0 37.0 7 36.183580749841376 37.0 37.0 37.0 35.0 37.0 8 36.14635959856829 37.0 37.0 37.0 35.0 37.0 9 37.7851087426188 39.0 38.0 39.0 35.0 39.0 10 34.777585157047916 35.0 34.0 37.0 32.0 39.0 11 37.30908658665243 37.0 37.0 39.0 35.0 39.0 12 38.12970588521116 39.0 39.0 39.0 37.0 39.0 13 38.191441619208724 39.0 39.0 39.0 37.0 39.0 14 38.75248868274204 40.0 39.0 40.0 36.0 40.0 15 38.179607769520686 40.0 38.0 40.0 34.0 40.0 16 37.69952374959084 40.0 37.0 40.0 33.0 40.0 17 37.73348796716947 40.0 37.0 40.0 33.0 40.0 18 37.72760908452455 40.0 37.0 40.0 33.0 40.0 19 37.8332426720177 40.0 37.0 40.0 33.0 40.0 20 37.848489890611496 40.0 37.0 40.0 33.0 40.0 21 37.65913525933521 40.0 37.0 40.0 33.0 40.0 22 37.706382722536794 40.0 37.0 40.0 33.0 40.0 23 37.63891861552942 40.0 37.0 40.0 33.0 40.0 24 37.63085414336434 40.0 37.0 40.0 33.0 40.0 25 37.722564997052615 40.0 37.0 40.0 33.0 40.0 26 37.710520670898475 40.0 37.0 40.0 33.0 40.0 27 37.6755088114503 40.0 37.0 40.0 33.0 40.0 28 37.62939858483019 40.0 37.0 40.0 33.0 40.0 29 37.644679697719766 40.0 37.0 40.0 33.0 40.0 30 37.608956058060215 40.0 37.0 40.0 33.0 40.0 31 37.56711366843178 40.0 37.0 40.0 33.0 40.0 32 37.50519684882599 40.0 36.0 40.0 33.0 40.0 33 37.42569694849418 40.0 36.0 40.0 33.0 40.0 34 37.32633356869722 40.0 36.0 40.0 33.0 40.0 35 37.218562981408624 40.0 35.0 40.0 33.0 40.0 36 37.12803416165778 40.0 35.0 40.0 33.0 40.0 37 36.973705611212516 39.0 35.0 40.0 32.0 40.0 38 36.74146711103747 39.0 35.0 40.0 32.0 40.0 39 36.64307884405756 39.0 35.0 40.0 32.0 40.0 40 36.47980362166476 39.0 35.0 40.0 31.0 40.0 41 36.290911659377024 38.0 35.0 40.0 31.0 40.0 42 36.12767033128 38.0 35.0 40.0 31.0 40.0 43 35.91903363807386 38.0 35.0 40.0 30.0 40.0 44 35.732634210152696 38.0 35.0 40.0 30.0 40.0 45 35.53698780208291 37.0 35.0 40.0 30.0 40.0 46 35.337421980901155 37.0 35.0 40.0 29.0 40.0 47 35.19298535031651 37.0 34.0 40.0 29.0 40.0 48 35.02267646899182 36.0 34.0 40.0 29.0 40.0 49 34.82001465276479 36.0 34.0 40.0 28.0 40.0 50 34.64149813735438 36.0 34.0 39.0 28.0 40.0 51 34.4260245143457 35.0 34.0 39.0 27.0 40.0 52 33.746208046031775 35.0 33.0 38.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 9.0 15 23.0 16 50.0 17 151.0 18 366.0 19 881.0 20 1689.0 21 3121.0 22 5179.0 23 8137.0 24 12253.0 25 17551.0 26 24955.0 27 33833.0 28 44798.0 29 59391.0 30 76339.0 31 95015.0 32 118594.0 33 152296.0 34 227964.0 35 374954.0 36 406014.0 37 778758.0 38 1391344.0 39 385332.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.906880518340962 21.156890532564717 35.01460891552712 14.921620033567203 2 25.11408511829465 20.563266310326217 37.027432336438096 17.295216234941037 3 24.30747198565347 21.116999553685602 40.324920674311606 14.25060778634932 4 24.791544155379036 17.998629532739873 40.60316202966628 16.60666428221481 5 0.0 0.0 0.0 100.0 6 0.0 100.0 0.0 0.0 7 0.0 100.0 0.0 0.0 8 0.0 100.0 0.0 0.0 9 100.0 0.0 0.0 0.0 10 0.0 0.0 100.0 0.0 11 99.59239146536892 0.24799721450514683 0.12363122152908783 0.03598009859684726 12 99.53206909980305 0.32962795203317186 0.09502253970669346 0.04328040845707714 13 97.89198812324913 1.2730270853346966 0.32576447636038786 0.5092203150557751 14 61.908855631395035 21.9057648508568 5.837522123138688 10.347857394609479 15 31.28900954942156 23.655729712190023 18.4713482984945 26.58391243989392 16 28.202850960618857 16.897870798262808 29.743666684917443 25.155611556200892 17 24.12802183645931 15.483459465148014 30.007662955122765 30.38085574326991 18 23.477820212804033 18.831362605205644 33.309844349334995 24.380972832655328 19 25.671515921193627 17.766536564715942 30.652365644078134 25.909581870012293 20 28.610506899859423 18.20912970114475 26.990098836240538 26.19026456275529 21 30.72878187456314 19.67826965590653 20.85117820601522 28.741770263515114 22 30.25125154094609 20.454567540783962 21.777440572988997 27.516740345280954 23 28.998324010031762 21.350846492260366 22.043475241402046 27.607354256305822 24 29.65876502933516 22.629562130732907 20.667722367319833 27.043950472612106 25 31.611953451517767 21.06682177454889 21.97900497250651 25.34221980142683 26 31.576352589796773 19.357601175065458 21.862958488494545 27.203087746643224 27 33.44418901260702 21.305338067157635 19.263005276844105 25.987467643391238 28 31.79540929021315 20.780189803315903 18.653832342695505 28.770568563775434 29 30.371066691411876 21.304176654225326 18.383128320248478 29.941628334114323 30 30.095977742587753 20.801758900630222 19.685498858852537 29.41676449792949 31 28.82046191525525 20.99941241986547 18.95267100087011 31.227454664009162 32 30.266847657465668 24.298702132899297 17.84259726062983 27.5918529490052 33 30.917926266396368 22.74800254752371 18.94127019228969 27.392800993790235 34 29.546534616386495 23.193321448997736 20.111547786572125 27.148596148043648 35 31.799035742838527 23.832359287120003 19.127356986811325 25.241247983230146 36 33.06454919757032 22.642313970683567 19.774216585498124 24.518920246247987 37 32.29633379860958 22.96061222105054 20.070874631636556 24.67217934870333 38 29.755920776468542 26.130890289379067 22.173387573687503 21.939801360464887 39 31.227454664009162 25.69723292183762 22.191780562166525 20.883531851986692 40 31.775404545011742 25.698323227855706 18.717425626315627 23.808846600816924 41 30.664264201058117 27.323993203127095 17.78466882784281 24.227073767971977 42 31.26146747131251 26.635654571143537 18.06959423313445 24.03328372440951 43 31.305980399616118 25.700148305320763 17.986920594197816 25.0069507008653 44 29.78955434689603 26.234232338049857 18.993273048891453 24.98294026616266 45 29.055565075981292 24.577630855091456 19.691993290351572 26.674810778575676 46 28.367416062435662 23.283058374747185 21.039706337925182 27.309819224891974 47 29.70598002037924 21.780308551862657 22.095478098003817 26.418233329754287 48 29.54786194545199 20.81557734429423 21.565091624814322 28.07146908543946 49 28.24297896254538 22.353169555148035 21.41825584694379 27.9855956353628 50 29.819348143955477 22.658052301031596 20.112495878761763 27.41010367625117 51 27.27447908852313 23.653880932420225 22.38578392647166 26.685856052584985 52 29.821955397476984 23.20991306231644 21.47030610815504 25.497825432051535 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 11.5 6 23.0 7 18.5 8 14.0 9 88.5 10 163.0 11 383.0 12 603.0 13 994.5 14 1747.0 15 2108.0 16 2567.0 17 3026.0 18 3784.0 19 4542.0 20 6462.5 21 8383.0 22 11889.5 23 15396.0 24 21835.5 25 28275.0 26 33220.5 27 38166.0 28 38784.5 29 39403.0 30 38393.0 31 37383.0 32 35704.5 33 34026.0 34 35794.0 35 37562.0 36 41929.0 37 46296.0 38 49433.0 39 59028.5 40 65487.0 41 72490.5 42 79494.0 43 93469.5 44 107445.0 45 121316.5 46 135188.0 47 158071.0 48 180954.0 49 199692.0 50 218430.0 51 246271.0 52 274112.0 53 290328.0 54 306544.0 55 330837.5 56 355131.0 57 378145.5 58 401160.0 59 404457.5 60 407755.0 61 386647.5 62 365540.0 63 321794.0 64 246208.5 65 214369.0 66 187435.0 67 160501.0 68 148856.5 69 137212.0 70 109075.0 71 80938.0 72 67288.0 73 53638.0 74 41253.5 75 28869.0 76 19282.0 77 9695.0 78 7752.0 79 5809.0 80 3901.5 81 1994.0 82 1564.0 83 1134.0 84 643.5 85 153.0 86 95.5 87 38.0 88 37.0 89 18.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 4218999.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 10.004042967662901 #Duplication Level Percentage of deduplicated Percentage of total 1 74.68030149428206 7.471049449868178 2 8.722331764450463 1.7451716349954678 3 4.0063997622889 1.2024058610271775 4 2.379185951800299 0.9520591395948057 5 1.5251170209482254 0.7628668104140044 6 1.0322243511765519 0.6195850056862912 7 0.7195869512820309 0.5039145145716492 8 0.5384533879949789 0.43093686636683454 9 0.40763392353672084 0.3670188557524532 >10 2.85454634691294 5.676374934095896 >50 0.5852487099108691 4.300536301286053 >100 2.247165749369405 54.321616457652055 >500 0.27193477349247447 17.751300196869995 >1k 0.029869812554094294 3.895163971819146 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.004693056338719208 0.0 0.0 0.0 0.0 12 0.014553215110977746 0.0 0.0 0.0 0.0 13 0.021616501923797566 0.0 0.0 0.0 0.0 14 0.07712729962723386 0.0 0.0 0.0 0.0 15 0.14197680539862656 0.0 0.0 0.0 0.0 16 0.16809674522321527 0.0 0.0 0.0 0.0 17 0.18701118440653813 0.0 0.0 0.0 0.0 18 0.21187490207985354 0.0 0.0 0.0 0.0 19 0.23403655701269424 0.0 0.0 0.0 0.0 20 0.26319039184413173 0.0 0.0 0.0 0.0 21 0.2978668636802237 0.0 0.0 0.0 0.0 22 0.33041012808962505 0.0 0.0 0.0 0.0 23 0.3621238118330912 0.0 0.0 0.0 0.0 24 0.39620772605065796 0.0 0.0 0.0 0.0 25 0.43349145140826056 0.0 0.0 0.0 0.0 26 0.4767718598653377 0.0 0.0 0.0 0.0 27 0.5202892913698249 0.0 0.0 0.0 0.0 28 0.5653236703777366 0.0 0.0 0.0 0.0 29 0.6241053861354317 0.0 0.0 0.0 0.0 30 0.6926761537511623 0.0 0.0 0.0 0.0 31 0.7505571819286992 0.0 0.0 0.0 0.0 32 0.7997868688757689 0.0 0.0 0.0 0.0 33 0.8370942965381125 0.0 0.0 0.0 0.0 34 0.87826519987324 0.0 0.0 0.0 0.0 35 0.9164259105062599 0.0 0.0 0.0 0.0 36 0.9562457824711501 0.0 0.0 0.0 0.0 37 0.9982462664722129 0.0 0.0 0.0 0.0 38 1.041337056491362 0.0 0.0 0.0 0.0 39 1.0885994521449283 0.0 0.0 0.0 0.0 40 1.1396068119475733 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCTT 35 1.0204349E-7 46.000004 14 CGATAAT 70 0.0 46.000004 27 GCGTACT 35 1.0204349E-7 46.000004 13 TAACTAA 35 1.0204349E-7 46.000004 19 ATTAGGT 20 6.313381E-4 46.0 30 CGTATAA 30 1.8625942E-6 46.0 34 AATCACG 40 5.6170393E-9 46.0 14 CGACGTA 45 3.110472E-10 46.0 39 CGTCTAT 25 3.4187196E-5 46.0 22 CGATTAG 25 3.4187196E-5 46.0 36 ACGGGTA 20 6.313381E-4 46.0 34 ATGTACG 25 3.4187196E-5 46.0 27 ATATCGC 30 1.8625942E-6 46.0 26 CCGTAAC 55 1.8189894E-12 46.0 15 TACGCCC 45 3.110472E-10 46.0 40 TACGATA 50 1.6370905E-11 46.0 44 TACGACT 40 5.6170393E-9 46.0 32 CGTACTC 40 5.6170393E-9 46.0 21 CGTACTA 30 1.8625942E-6 46.0 17 CGTACGT 30 1.8625942E-6 46.0 42 >>END_MODULE