##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528016_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4184480 Sequences flagged as poor quality 0 Sequence length 52 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.123239685695715 31.0 31.0 33.0 30.0 33.0 2 31.835720328451803 31.0 31.0 34.0 30.0 34.0 3 32.30828059878408 34.0 31.0 34.0 30.0 34.0 4 36.03382833709326 37.0 35.0 37.0 35.0 37.0 5 36.123002858180705 37.0 35.0 37.0 35.0 37.0 6 36.23764075823041 37.0 36.0 37.0 35.0 37.0 7 36.187364260314304 37.0 37.0 37.0 35.0 37.0 8 36.094845237640044 37.0 36.0 37.0 35.0 37.0 9 37.77928488127557 39.0 38.0 39.0 35.0 39.0 10 34.820531822353075 37.0 34.0 37.0 32.0 39.0 11 37.32064892172982 37.0 37.0 39.0 35.0 39.0 12 38.109899676901314 39.0 39.0 39.0 37.0 39.0 13 38.18953012082744 39.0 39.0 39.0 37.0 39.0 14 38.77294598134057 40.0 39.0 40.0 36.0 40.0 15 38.198998441861356 40.0 38.0 40.0 34.0 40.0 16 37.7298644037013 40.0 37.0 40.0 33.0 40.0 17 37.77371214583413 40.0 37.0 40.0 33.0 40.0 18 37.79234432952243 40.0 37.0 40.0 33.0 40.0 19 37.89051757924521 40.0 38.0 40.0 33.0 40.0 20 37.88285139372156 40.0 37.0 40.0 34.0 40.0 21 37.88111187053111 40.0 37.0 40.0 34.0 40.0 22 37.82812870416396 40.0 37.0 40.0 33.0 40.0 23 37.73093048598631 40.0 37.0 40.0 33.0 40.0 24 37.72826468282798 40.0 37.0 40.0 33.0 40.0 25 37.67006055710626 40.0 37.0 40.0 33.0 40.0 26 37.63417079302565 40.0 37.0 40.0 33.0 40.0 27 37.63915086223378 40.0 37.0 40.0 33.0 40.0 28 37.44937985125989 40.0 37.0 40.0 33.0 40.0 29 37.57264773639736 40.0 37.0 40.0 33.0 40.0 30 37.59697118877376 40.0 37.0 40.0 33.0 40.0 31 37.59293149925439 40.0 37.0 40.0 33.0 40.0 32 37.52864155163844 40.0 36.0 40.0 33.0 40.0 33 37.44444614384583 40.0 36.0 40.0 33.0 40.0 34 37.36864198179941 40.0 36.0 40.0 33.0 40.0 35 37.19459741712232 40.0 35.0 40.0 33.0 40.0 36 36.7271221274806 39.0 35.0 40.0 31.0 40.0 37 36.79718985393645 39.0 35.0 40.0 32.0 40.0 38 36.6792588326387 39.0 35.0 40.0 31.0 40.0 39 36.62017574465644 39.0 35.0 40.0 31.0 40.0 40 36.46503221427752 39.0 35.0 40.0 31.0 40.0 41 36.31066870913471 38.0 35.0 40.0 31.0 40.0 42 35.99916142507552 38.0 35.0 40.0 30.0 40.0 43 35.79166132948419 38.0 35.0 40.0 30.0 40.0 44 35.60910292318281 37.0 35.0 40.0 30.0 40.0 45 35.17823074790655 37.0 34.0 40.0 28.0 40.0 46 35.133355398998205 37.0 34.0 40.0 28.0 40.0 47 35.06854256681834 37.0 34.0 40.0 28.0 40.0 48 34.891995899132034 36.0 34.0 40.0 28.0 40.0 49 34.695632671204066 36.0 34.0 40.0 27.0 40.0 50 34.454293245516766 35.0 34.0 39.0 27.0 40.0 51 34.329907658777195 35.0 34.0 39.0 27.0 40.0 52 33.78671280541429 35.0 33.0 39.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 0.0 14 6.0 15 13.0 16 48.0 17 157.0 18 399.0 19 846.0 20 1656.0 21 3037.0 22 5287.0 23 8141.0 24 12362.0 25 17717.0 26 25219.0 27 34617.0 28 46234.0 29 60208.0 30 77414.0 31 96874.0 32 119996.0 33 154785.0 34 231211.0 35 373974.0 36 410142.0 37 776967.0 38 1340662.0 39 386505.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.92247065346232 21.11691297365503 34.99223320460368 14.968383168278972 2 25.25365158872787 20.618786563682942 36.86185619240622 17.265705655182963 3 24.381452414636946 21.048660765495356 40.30460176652774 14.26528505333996 4 24.83281076740718 17.962399151149008 40.619742476962486 16.58504760448132 5 0.0 0.0 0.0 100.0 6 0.0 100.0 0.0 0.0 7 0.0 100.0 0.0 0.0 8 0.0 100.0 0.0 0.0 9 100.0 0.0 0.0 0.0 10 0.0 0.0 100.0 0.0 11 99.58642411960386 0.2509750315451382 0.12577428975643332 0.03682655909455894 12 99.52419416510534 0.33311188009023823 0.09872194394524528 0.043972010859174855 13 97.89017990287921 1.2758813520437426 0.32333766680686726 0.5106010782701793 14 61.83893817152908 21.972096891370015 5.833795358085114 10.355169579015792 15 31.28340916912018 23.68038561541697 18.488055863572058 26.5481493518908 16 28.216982755324437 16.918231178067526 29.693056245937367 25.17172982067067 17 24.151364088249913 15.472006079608459 30.001744541735174 30.374885290406457 18 23.448337666806868 18.90454727947081 33.29816369058999 24.348951363132336 19 25.721834015218136 17.780369364891214 30.589941880472605 25.907854739418042 20 28.61112969831377 18.22811914503116 27.02569972852063 26.13505142813444 21 30.423684663327343 19.791587007226706 20.885964325316408 28.898764004129546 22 30.293345887661072 20.455349290712345 21.74466122433373 27.50664359729285 23 28.976838221236566 21.357325163461173 22.07753412610408 27.58830248919818 24 29.67195446029136 22.63817726455856 20.614891217068788 27.07497705808129 25 31.617309677666043 21.08577409857378 21.916558329828316 25.380357893931865 26 31.59957748633044 19.390366305968723 21.839009865025044 27.17104634267579 27 33.43199154972661 21.343344931747794 19.230083546820634 25.99457997170497 28 31.82101479753757 20.844143119336213 18.65338106526976 28.681461017856456 29 30.336146904752802 21.378068481627345 18.387278706075787 29.898505907544067 30 30.10926088785225 20.810160402248307 19.665358658662484 29.41522005123695 31 28.85402726264673 20.966547814782245 18.943070584636562 31.236354337934465 32 30.293298091997094 24.33626161434635 17.807756280350244 27.562684013306317 33 30.911558903376285 22.749087102818034 18.95286869575192 27.38648529805376 34 29.53963216457003 23.20610924176959 20.102545597063433 27.15171299659695 35 31.855355982105305 23.85151799028792 19.083733223721943 25.209392803884832 36 33.127318089702904 22.60223492524758 19.82267808664398 24.447768898405535 37 32.23071922915153 22.979509998852905 20.109260887852255 24.680509884143312 38 29.75284862157305 26.17053970863763 22.157567965434176 21.91904370435514 39 31.22947176232172 25.68921347455359 22.19664092073567 20.884673842389017 40 31.76349271594081 25.68481627346767 18.76866420678316 23.783026803808358 41 30.661563682942685 27.332237219439453 17.810886896340765 24.1953122012771 42 31.382441784881276 26.59219305624594 18.081912208924404 23.94345294994838 43 31.24617634688181 25.714067219821818 17.981947577715747 25.05780885558062 44 29.953447023286046 26.183540129239475 18.95251022827209 24.910502619202386 45 29.138865522119833 24.552417504683973 19.699221886590447 26.609495086605744 46 28.37466065078576 23.32753412610408 21.037930638932437 27.259874584177723 47 29.79330765112989 21.742247543302874 22.07610025618476 26.38834454938248 48 29.652692807708487 20.800099414981073 21.52341509578251 28.023792681527933 49 28.273907391121476 22.33426853515849 21.427608687339887 27.964215386380147 50 29.88827763545291 22.649504836921196 20.166759071617022 27.29545845600887 51 27.25308759989294 23.7088240354835 22.337829312124803 26.700259052498758 52 29.87764310021795 23.202142201659466 21.413269988146673 25.506944709975908 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 13.5 6 27.0 7 19.5 8 12.0 9 90.0 10 168.0 11 380.0 12 592.0 13 925.0 14 1677.5 15 2097.0 16 2574.5 17 3052.0 18 3790.0 19 4528.0 20 6299.0 21 8070.0 22 11613.5 23 15157.0 24 21290.5 25 27424.0 26 32362.0 27 37300.0 28 38257.5 29 39215.0 30 38227.0 31 37239.0 32 35632.5 33 34026.0 34 35689.5 35 37353.0 36 41753.5 37 46154.0 38 49171.5 39 58544.5 40 64900.0 41 72054.0 42 79208.0 43 92802.5 44 106397.0 45 120108.5 46 133820.0 47 157009.0 48 180198.0 49 198719.5 50 217241.0 51 244825.5 52 272410.0 53 287965.5 54 303521.0 55 328649.5 56 353778.0 57 375595.5 58 397413.0 59 400550.5 60 403688.0 61 383012.5 62 362337.0 63 319265.5 64 244122.5 65 212051.0 66 185641.0 67 159231.0 68 147277.0 69 135323.0 70 107749.0 71 80175.0 72 66595.0 73 53015.0 74 40816.0 75 28617.0 76 19305.0 77 9993.0 78 7909.5 79 5826.0 80 3898.0 81 1970.0 82 1560.5 83 1151.0 84 635.0 85 119.0 86 73.5 87 28.0 88 21.5 89 7.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 4184480.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 10.308152794832722 #Duplication Level Percentage of deduplicated Percentage of total 1 73.9970065493249 7.627724498706787 2 9.193375216713056 1.8953343286821314 3 4.206666598364197 1.3008888615857206 4 2.4229581880543036 0.9990489287181918 5 1.5732769856139102 0.8108789778151012 6 0.999666546950808 0.6182829305911048 7 0.7130175522646164 0.5144925711898904 8 0.5584864155806473 0.4605570644515007 9 0.41182883454400615 0.382067509661775 >10 2.787838814210073 5.741447600906071 >50 0.5959324903372665 4.50975135529858 >100 2.265716859176908 55.196556741983805 >500 0.24881496860860602 16.551938677283555 >1k 0.025413980256715592 3.3910299531257926 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.005520399189385539 0.0 0.0 0.0 0.0 12 0.01598764960042825 0.0 0.0 0.0 0.0 13 0.02382613849271594 0.0 0.0 0.0 0.0 14 0.07635357320383895 0.0 0.0 0.0 0.0 15 0.14324360494015984 0.0 0.0 0.0 0.0 16 0.17125186403089512 0.0 0.0 0.0 0.0 17 0.1896053989982029 0.0 0.0 0.0 0.0 18 0.21331204833097542 0.0 0.0 0.0 0.0 19 0.23701869766374795 0.0 0.0 0.0 0.0 20 0.2666520093297136 0.0 0.0 0.0 0.0 21 0.3007542155775628 0.0 0.0 0.0 0.0 22 0.33442626084961574 0.0 0.0 0.0 0.0 23 0.3665210492104156 0.0 0.0 0.0 0.0 24 0.4005515619622988 0.0 0.0 0.0 0.0 25 0.43587255764157073 0.0 0.0 0.0 0.0 26 0.47805223110159445 0.0 0.0 0.0 0.0 27 0.5197539479218445 0.0 0.0 0.0 0.0 28 0.5625071693495967 0.0 0.0 0.0 0.0 29 0.6184041983711238 0.0 0.0 0.0 0.0 30 0.6859394715711391 0.0 0.0 0.0 0.0 31 0.7464487821664818 0.0 0.0 0.0 0.0 32 0.7929300653844683 0.0 0.0 0.0 0.0 33 0.8325765686536918 0.0 0.0 0.0 0.0 34 0.8741348984820098 0.0 0.0 0.0 0.0 35 0.9127537949757198 0.0 0.0 0.0 0.0 36 0.9518745459411923 0.0 0.0 0.0 0.0 37 0.9909952969066647 0.0 0.0 0.0 0.0 38 1.0339874966543035 0.0 0.0 0.0 0.0 39 1.079034909952969 0.0 0.0 0.0 0.0 40 1.1288857874813596 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTACCG 20 6.3133735E-4 46.000004 23 CGATTAG 40 5.6170393E-9 46.000004 36 ACTAGGT 20 6.3133735E-4 46.000004 28 CCGTACT 20 6.3133735E-4 46.000004 21 CGTACTC 20 6.3133735E-4 46.000004 21 TTACGTA 20 6.3133735E-4 46.000004 18 CACGTTA 20 6.3133735E-4 46.000004 39 ATCGGTT 40 5.6170393E-9 46.000004 14 CGACTTA 40 5.6170393E-9 46.000004 34 TTCGAAT 20 6.3133735E-4 46.000004 18 AATCACG 25 3.4187135E-5 46.0 14 TTATCGA 30 1.8625906E-6 46.0 38 ATATCGC 25 3.4187135E-5 46.0 26 TACGCCC 50 1.6370905E-11 46.0 40 TACGCAC 50 1.6370905E-11 46.0 32 CGTACTA 25 3.4187135E-5 46.0 17 TCGTACT 25 3.4187135E-5 46.0 16 CGTAATC 50 1.6370905E-11 46.0 33 ACCGTTA 210 0.0 46.0 36 CGCGTAA 30 1.8625906E-6 46.0 17 >>END_MODULE