SRR1528006_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1528006_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1667126
Sequences flagged as poor quality	0
Sequence length	59
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCAAGCTGTGGGGAGCCAAGGTGGGTGGATCACTTGAGGCCAGGAGTTTGAGACCAGCC	2069	0.12410579644250046	No Hit
CACTGCTGTGGGGCTGGGATACATGAGGATCAATGCCCGTTTTCTCCCCGTGTGCTTTC	1897	0.1137886398508571	No Hit
GTGGGCTGTGGGGGGCTCCTGAGACCCACCTCTGCTCTGTGCTGCTGCGTAGAGCTCTC	1740	0.10437123528755476	No Hit
ACCTGCTGTGGGGGGGAGGGGCTGGAGAGATGGCTCATCGGTTAAGAGCTCTGACTACT	1737	0.10419128488188656	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTT	45	7.6397555E-11	53.000004	39
CGACGTA	75	0.0	53.000004	50
GTTTAGT	45	7.6397555E-11	53.000004	34
GACCGAC	75	0.0	53.000004	15
TCTAGTC	45	7.6397555E-11	53.000004	44
CGTAAGT	45	7.6397555E-11	53.000004	26
CTACAAC	45	7.6397555E-11	53.000004	47
TCGCGAT	90	0.0	53.000004	48
TAATCGA	45	7.6397555E-11	53.000004	42
TATTTCG	20	3.1386557E-4	53.0	51
ATTTACG	55	0.0	53.0	23
TTAGGCG	40	1.6025297E-9	53.0	16
CCTTATA	30	7.012404E-7	53.0	33
ACTATCC	25	1.4790223E-5	53.0	16
TACCCTA	20	3.1386557E-4	53.0	23
TCGCACT	15	0.006696793	53.0	52
CAAACGA	20	3.1386557E-4	53.0	44
GCCCACG	15	0.006696793	53.0	15
CTCAATT	40	1.6025297E-9	53.0	51
ATAGGTG	20	3.1386557E-4	53.0	28