##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1528005_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3692599 Sequences flagged as poor quality 0 Sequence length 52 %GC 57 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.18588885497721 31.0 31.0 33.0 30.0 33.0 2 31.928364005948115 31.0 31.0 34.0 30.0 34.0 3 32.328201356280495 33.0 31.0 34.0 30.0 34.0 4 35.95552752952595 37.0 35.0 37.0 35.0 37.0 5 36.0305836079141 37.0 35.0 37.0 35.0 37.0 6 36.016560422618326 37.0 35.0 37.0 35.0 37.0 7 35.85600440231934 37.0 35.0 37.0 35.0 37.0 8 32.703704626470405 35.0 32.0 35.0 28.0 35.0 9 36.816985272432774 37.0 37.0 39.0 34.0 39.0 10 37.87839432334786 39.0 37.0 39.0 35.0 39.0 11 37.891792745434856 39.0 37.0 39.0 35.0 39.0 12 38.0399358283962 39.0 38.0 39.0 35.0 39.0 13 38.05686455529019 39.0 39.0 39.0 37.0 39.0 14 38.682041835574346 40.0 39.0 40.0 36.0 40.0 15 38.11119485218948 40.0 38.0 40.0 34.0 40.0 16 37.660231452156054 40.0 37.0 40.0 33.0 40.0 17 37.69029726758849 40.0 37.0 40.0 33.0 40.0 18 37.69347497521394 40.0 37.0 40.0 33.0 40.0 19 37.806326655019944 40.0 37.0 40.0 33.0 40.0 20 37.84400797378757 40.0 37.0 40.0 33.0 40.0 21 37.66495685017517 40.0 37.0 40.0 33.0 40.0 22 37.6758854671195 40.0 37.0 40.0 33.0 40.0 23 37.59859139863278 40.0 37.0 40.0 33.0 40.0 24 37.6001802524455 40.0 37.0 40.0 33.0 40.0 25 37.65372275733162 40.0 37.0 40.0 33.0 40.0 26 37.61563522061291 40.0 37.0 40.0 33.0 40.0 27 37.54645630354122 40.0 37.0 40.0 33.0 40.0 28 37.526464422484004 40.0 37.0 40.0 33.0 40.0 29 37.52111805262364 40.0 36.0 40.0 33.0 40.0 30 37.45998143854776 40.0 36.0 40.0 33.0 40.0 31 37.393333530123364 40.0 36.0 40.0 33.0 40.0 32 37.29465750275077 40.0 35.0 40.0 33.0 40.0 33 37.18859128759987 40.0 35.0 40.0 33.0 40.0 34 37.07313737559914 39.0 35.0 40.0 33.0 40.0 35 36.93787356818328 39.0 35.0 40.0 32.0 40.0 36 36.80403450252789 39.0 35.0 40.0 32.0 40.0 37 36.62488480335937 39.0 35.0 40.0 32.0 40.0 38 36.392357252980894 38.0 35.0 40.0 31.0 40.0 39 36.21086611354225 38.0 35.0 40.0 31.0 40.0 40 35.998366733024625 38.0 35.0 40.0 31.0 40.0 41 35.809516007559985 37.0 35.0 40.0 30.0 40.0 42 35.588531546479864 37.0 35.0 40.0 30.0 40.0 43 35.32427133300962 37.0 35.0 40.0 30.0 40.0 44 35.0965428415054 36.0 34.0 40.0 29.0 40.0 45 34.90391699721524 36.0 34.0 40.0 29.0 40.0 46 34.71834824198349 35.0 34.0 39.0 28.0 40.0 47 34.53043967135343 35.0 34.0 39.0 28.0 40.0 48 34.33589783239393 35.0 34.0 39.0 27.0 40.0 49 34.150539227248885 35.0 34.0 39.0 27.0 40.0 50 33.951218098688756 35.0 33.0 38.0 27.0 40.0 51 33.72537554172549 35.0 33.0 38.0 26.0 40.0 52 33.10425664958475 35.0 33.0 37.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 7.0 14 12.0 15 22.0 16 62.0 17 157.0 18 396.0 19 864.0 20 1692.0 21 3073.0 22 5108.0 23 8187.0 24 12554.0 25 18166.0 26 25409.0 27 34091.0 28 45538.0 29 59063.0 30 74400.0 31 91771.0 32 111367.0 33 143560.0 34 216844.0 35 331421.0 36 434310.0 37 773183.0 38 1049178.0 39 252160.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.15223071879725 18.975577905968127 34.95584004653633 18.916351328698298 2 16.92520633840826 23.7408936090813 35.347136258228964 23.98676379428148 3 17.565487072926143 25.338711297923222 37.853419772902505 19.242381856248134 4 19.54994300762146 24.30599694144964 32.87494797025076 23.269112080678134 5 100.0 0.0 0.0 0.0 6 100.0 0.0 0.0 0.0 7 100.0 0.0 0.0 0.0 8 0.0 0.0 100.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 100.0 0.0 11 99.44667698821345 0.16817423175384058 0.3019553436482001 0.08319343638450857 12 99.17979179434323 0.4540162633418901 0.18583117202815685 0.1803607702867276 13 97.7223901105969 1.2883879348935532 0.414342310118158 0.5748796443913894 14 58.447586645611935 24.523296464089388 7.079972669656251 9.949144220642426 15 32.273609996644645 25.172080694383546 19.851790026482703 22.70251928248911 16 27.90836481296778 18.58896674131147 28.104622245740735 25.398046199980012 17 24.066869974237655 18.262854970171418 30.14045121065136 27.529823844939568 18 24.595603259384514 19.685511478500644 29.409827603809674 26.309057658305168 19 26.033208588314082 18.141179153219724 29.003745058697138 26.821867199769052 20 30.27637173708816 17.290342114050294 25.01162460370054 27.421661545161008 21 31.540630325686596 19.620516606325246 20.12498513919329 28.71386792879487 22 31.37489340163933 19.80772891938713 21.362487505412854 27.45489017356068 23 29.366416445435856 20.082223929541225 22.578081183469962 27.973278441552957 24 30.3174809937391 20.67622289883088 22.18250614269245 26.82378996473757 25 33.1103648135094 18.97733818375621 22.539084260164724 25.373212742569663 26 31.927945601458486 18.981454525660652 21.731468810991935 27.35913106188893 27 32.398102258057264 21.054818029252566 20.81823669453412 25.728843018156045 28 31.767976972316784 20.69409648867911 19.95261332194479 27.585313217059316 29 30.5520583198988 21.013898340978805 20.373400956887007 28.060642382235386 30 31.38404684613737 20.88496476330086 19.353496006471325 28.37749238409045 31 29.643971630821543 20.611173864262 20.605540975340134 29.13931352957632 32 31.476935350954705 22.869637347570098 18.508725155371597 27.1447021461036 33 30.385048579604774 23.333619491312216 20.177062280523828 26.104269648559185 34 30.04466501778287 23.66782854027746 19.89392836860975 26.39357807332992 35 31.48094336807219 23.439534051761374 19.740269658308414 25.33925292185802 36 33.07288443722159 22.369826780541295 19.28281408298058 25.274474699256537 37 32.35114346291054 23.220582576120506 19.848404876890232 24.57986908407872 38 30.958520001765695 25.034020753404306 21.461523441890115 22.54593580293988 39 31.975012721392172 24.31452751842266 21.49236892497669 22.218090835208482 40 32.49150530561266 24.115941102730083 19.0755075219378 24.31704606971946 41 31.93720737074348 25.654640539089137 18.020180366186526 24.38797172398086 42 32.27109144534784 25.319402404647782 18.401862753036546 24.007643396967826 43 31.839850468464082 23.917327605840764 19.19209207390242 25.050729851792735 44 29.75427334514254 24.32443923642941 20.304100174429987 25.617187243998064 45 28.170998258949865 24.33080331766325 20.604024428322706 26.89417399506418 46 28.9219598445431 22.45748861438786 21.812441589243782 26.80810995182526 47 28.267515644130327 21.689682524422498 22.806456915576266 27.23634491587091 48 29.386185719055874 21.233310196964254 22.433440511682964 26.94706357229691 49 29.43030098854492 21.659947370402254 21.37819459952191 27.531557041530913 50 28.87735711351273 23.104322998516764 20.7083953605577 27.309924527412804 51 28.580818009212482 23.922012652876738 21.42100997156745 26.076159366343326 52 30.155562518432138 23.103185588253695 21.24224699188837 25.4990049014258 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 19.5 10 39.0 11 333.5 12 628.0 13 1115.5 14 2382.0 15 3161.0 16 3139.5 17 3118.0 18 3428.5 19 3739.0 20 4539.5 21 5340.0 22 6940.0 23 8540.0 24 12466.0 25 16392.0 26 20988.0 27 25584.0 28 29155.0 29 32726.0 30 33159.5 31 33593.0 32 32275.0 33 30957.0 34 32162.5 35 33368.0 36 33320.0 37 33272.0 38 35261.0 39 39501.5 40 41753.0 41 47983.5 42 54214.0 43 57540.5 44 60867.0 45 77027.0 46 93187.0 47 97191.0 48 101195.0 49 120419.0 50 139643.0 51 162584.5 52 185526.0 53 212230.0 54 238934.0 55 257248.0 56 275562.0 57 303772.5 58 331983.0 59 343109.0 60 354235.0 61 359934.0 62 365633.0 63 341770.5 64 290114.0 65 262320.0 66 223190.0 67 184060.0 68 164440.5 69 144821.0 70 128679.0 71 112537.0 72 93438.0 73 74339.0 74 58656.0 75 42973.0 76 34094.0 77 25215.0 78 17628.0 79 10041.0 80 7108.0 81 4175.0 82 3100.5 83 2026.0 84 1072.0 85 118.0 86 67.0 87 16.0 88 11.5 89 4.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3692599.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 9.995449721239433 #Duplication Level Percentage of deduplicated Percentage of total 1 76.59224455676194 7.655739295039887 2 7.898470242910201 1.5789752437542943 3 3.6115560590379134 1.082973810106533 4 2.107729356465494 0.8427081123412475 5 1.3707652828270835 0.6850707732059332 6 0.9164538742426067 0.5496221173096237 7 0.6859381212786982 0.47993820021858663 8 0.4845924831013078 0.38749758401037543 9 0.3890217961731762 0.3499603023703714 >10 2.7770172446913577 5.554907844835919 >50 0.5357019489492157 3.9249967986194725 >100 2.3559808340961323 57.70981680404823 >500 0.252991230489955 16.358277767219867 >1k 0.021536968974899186 2.8395153469196552 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0010832478695899555 0.0 0.0 0.0 0.0 12 0.004008017117482835 0.0 0.0 0.0 0.0 13 0.010399179548063573 0.0 0.0 0.0 0.0 14 0.061230585828572236 0.0 0.0 0.0 0.0 15 0.1193197528353336 0.0 0.0 0.0 0.0 16 0.15122140259475778 0.0 0.0 0.0 0.0 17 0.17074694544411673 0.0 0.0 0.0 0.0 18 0.19319725754136857 0.0 0.0 0.0 0.0 19 0.21407686022771494 0.0 0.0 0.0 0.0 20 0.23972275354025716 0.0 0.0 0.0 0.0 21 0.26666854429630726 0.0 0.0 0.0 0.0 22 0.2950767196763039 0.0 0.0 0.0 0.0 23 0.322022510432354 0.0 0.0 0.0 0.0 24 0.35262426274827025 0.0 0.0 0.0 0.0 25 0.3860695407218601 0.0 0.0 0.0 0.0 26 0.42910156234132113 0.0 0.0 0.0 0.0 27 0.4735959685847285 0.0 0.0 0.0 0.0 28 0.517548750893341 0.0 0.0 0.0 0.0 29 0.5716569819793592 0.0 0.0 0.0 0.0 30 0.6347561703829742 0.0 0.0 0.0 0.0 31 0.6879978031733205 0.0 0.0 0.0 0.0 32 0.7292695470046978 0.0 0.0 0.0 0.0 33 0.7699184233110609 0.0 0.0 0.0 0.0 34 0.8092132397804365 0.0 0.0 0.0 0.0 35 0.8450145818703845 0.0 0.0 0.0 0.0 36 0.881628359862525 0.0 0.0 0.0 0.0 37 0.9195961976916529 0.0 0.0 0.0 0.0 38 0.9600013432273583 0.0 0.0 0.0 0.0 39 1.0013001682554754 0.0 0.0 0.0 0.0 40 1.046200792449979 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGACG 25 3.4186352E-5 46.0 34 AGGTACT 60 0.0 46.0 15 GATACAC 65 0.0 46.0 35 CGAACTA 65 0.0 46.0 15 TCGCAAT 30 1.8625306E-6 46.0 39 ATTAGTA 40 5.6170393E-9 46.0 19 CGTATAC 20 6.313279E-4 46.0 16 TTTACTA 20 6.313279E-4 46.0 26 CGACGTA 20 6.313279E-4 46.0 20 CCTAGTA 25 3.4186352E-5 46.0 40 AGATACG 20 6.313279E-4 46.0 23 ACGTTAT 20 6.313279E-4 46.0 45 CTATATA 45 3.110472E-10 46.0 18 CGCATTC 65 0.0 46.0 39 CACATAA 25 3.4186352E-5 46.0 21 GCTATAT 55 1.8189894E-12 46.0 21 GCACGTA 30 1.8625306E-6 46.0 15 TAAACGA 30 1.8625306E-6 46.0 39 ATTCGTC 50 1.6370905E-11 46.0 45 GCGTTTA 30 1.8625306E-6 46.0 35 >>END_MODULE