##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527999_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8197463 Sequences flagged as poor quality 0 Sequence length 52 %GC 53 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.91433447153101 33.0 31.0 34.0 30.0 34.0 2 32.409996361069275 34.0 31.0 34.0 30.0 34.0 3 32.58101841996725 34.0 31.0 34.0 31.0 34.0 4 36.1556986594511 37.0 35.0 37.0 35.0 37.0 5 35.93521434619467 37.0 35.0 37.0 35.0 37.0 6 36.15260880104003 37.0 35.0 37.0 35.0 37.0 7 36.125239845547334 37.0 36.0 37.0 35.0 37.0 8 36.13437913656945 37.0 37.0 37.0 35.0 37.0 9 38.1582844594724 39.0 39.0 39.0 37.0 39.0 10 37.8120134241533 39.0 38.0 39.0 35.0 39.0 11 38.18392592927837 39.0 39.0 39.0 37.0 39.0 12 38.096678447953956 39.0 39.0 39.0 37.0 39.0 13 38.05155851267642 39.0 39.0 39.0 37.0 39.0 14 38.65195573313353 40.0 39.0 40.0 36.0 40.0 15 38.18019623876314 40.0 38.0 40.0 34.0 40.0 16 37.72108614579901 40.0 37.0 40.0 33.0 40.0 17 37.72860481346485 40.0 37.0 40.0 33.0 40.0 18 37.75965881151278 40.0 37.0 40.0 33.0 40.0 19 37.850553884781185 40.0 38.0 40.0 33.0 40.0 20 37.84755661599205 40.0 37.0 40.0 33.0 40.0 21 37.66967206805325 40.0 37.0 40.0 33.0 40.0 22 37.72845952461146 40.0 37.0 40.0 33.0 40.0 23 37.673493860234565 40.0 37.0 40.0 33.0 40.0 24 37.65808006696706 40.0 37.0 40.0 33.0 40.0 25 37.751172039446836 40.0 37.0 40.0 33.0 40.0 26 37.73233486994696 40.0 37.0 40.0 33.0 40.0 27 37.69991618138441 40.0 37.0 40.0 33.0 40.0 28 37.65088137634778 40.0 37.0 40.0 33.0 40.0 29 37.654403685628104 40.0 37.0 40.0 33.0 40.0 30 37.612648815859245 40.0 37.0 40.0 33.0 40.0 31 37.559418322473675 40.0 37.0 40.0 33.0 40.0 32 37.49741840859788 40.0 36.0 40.0 33.0 40.0 33 37.42971014324798 40.0 36.0 40.0 33.0 40.0 34 37.33813668936352 40.0 36.0 40.0 33.0 40.0 35 37.23643327209894 40.0 35.0 40.0 33.0 40.0 36 37.14662414456765 39.0 35.0 40.0 33.0 40.0 37 37.004090777841874 39.0 35.0 40.0 32.0 40.0 38 36.82575950632531 39.0 35.0 40.0 32.0 40.0 39 36.708705120108505 39.0 35.0 40.0 32.0 40.0 40 36.57613349398466 39.0 35.0 40.0 31.0 40.0 41 36.420169020586 38.0 35.0 40.0 31.0 40.0 42 36.2746093516982 38.0 35.0 40.0 31.0 40.0 43 36.10182174655744 38.0 35.0 40.0 31.0 40.0 44 35.960718578418714 38.0 35.0 40.0 31.0 40.0 45 35.81221446196219 37.0 35.0 40.0 30.0 40.0 46 35.64685342282118 37.0 35.0 40.0 30.0 40.0 47 35.498756017563 37.0 35.0 40.0 30.0 40.0 48 35.331433883873586 36.0 35.0 40.0 30.0 40.0 49 35.18439461086924 36.0 34.0 40.0 29.0 40.0 50 35.01158370583679 36.0 34.0 40.0 29.0 40.0 51 34.82713907949325 35.0 34.0 39.0 29.0 40.0 52 34.20775598499194 35.0 33.0 38.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 5.0 13 9.0 14 18.0 15 29.0 16 104.0 17 328.0 18 785.0 19 1733.0 20 3358.0 21 5910.0 22 9400.0 23 15082.0 24 22776.0 25 32248.0 26 44966.0 27 61452.0 28 81963.0 29 107626.0 30 136368.0 31 169847.0 32 211059.0 33 269985.0 34 389851.0 35 714771.0 36 765037.0 37 1411592.0 38 2492108.0 39 1249053.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.251489149752796 18.024491235886032 34.44477882974281 18.279240784618363 2 19.817936354211053 23.017182267245367 35.40830864378406 21.756572734759523 3 19.550524351253554 22.191268200905572 37.438570933470515 20.81963651437036 4 19.881699984495203 19.939815525852328 38.948794279400836 21.229690210251633 5 0.0 0.0 100.0 0.0 6 0.0 100.0 0.0 0.0 7 0.0 0.0 0.0 100.0 8 0.0 0.0 100.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 0.0 100.0 11 99.53097684002965 0.3374702636657219 0.0923578429082266 0.03919505339639837 12 99.20399762707072 0.591317094081425 0.09862807553995669 0.10605720330790148 13 95.37938750074261 2.4838660448970615 0.8697568991772211 1.2669895551831096 14 52.541682713298 29.93182158919168 7.010046888897212 10.516448808613104 15 33.157539106916374 26.0701268185047 20.0263300974948 20.74600397708413 16 28.740123621174014 18.299210377649768 26.636131203031958 26.324534798144256 17 22.676674478433146 18.642889879466367 30.075890552967422 28.604545089133065 18 23.720131460184692 20.618122948526878 30.40407745664726 25.25766813464117 19 25.936683093293624 20.008104946615802 28.878446904853366 25.17676505523721 20 28.437956963026245 20.24416578641465 25.646605541250995 25.67127170930811 21 29.962745790984357 20.654878222689142 22.741926374050117 26.640449612276385 22 28.936977208680297 20.63567716011649 24.059736530680283 26.36760910052293 23 28.17383866203483 21.73861595959628 22.975803611434415 27.11174176693448 24 27.70357121465507 23.220489070825938 23.06350147600544 26.012438238513553 25 29.10378491491819 20.163421292660914 24.768077635727053 25.964716156693846 26 29.599438265229132 20.247471687276906 22.836675200607797 27.31641484688617 27 29.46041964446805 22.322991881756586 22.15060927996869 26.065979193806672 28 28.777342453390766 22.280137159508982 22.333446335774862 26.609074051325393 29 29.965588133792124 21.499127229973467 20.87855718287475 27.656727453359654 30 29.01409863027134 21.125816609358285 21.508361794374675 28.3517229659957 31 27.27025422377631 21.550277201617135 22.033109512052693 29.146359062553866 32 28.074429857139947 23.254170223153185 21.976018677973904 26.695381241732964 33 29.352215435434108 22.04056303761298 21.886527575665788 26.72069395128712 34 28.208190753651465 22.369286692724323 22.60121210672131 26.821310446902903 35 30.247468027608054 22.74406118087999 21.59297333821452 25.41549745329744 36 31.567205609833188 21.862837319302326 21.916878429338443 24.653078641526044 37 30.437746410078336 22.42229089658593 22.11809922167383 25.021863471661902 38 28.766204861186928 24.286135844711957 23.280495441089517 23.667163853011598 39 28.659549911966664 24.42611817827052 24.735909146524968 22.178422763237844 40 29.973468620718386 24.296212132948938 22.197940997110933 23.532378249221743 41 29.963746100470352 25.08327271498511 21.32059638451555 23.632384800028987 42 30.37989924443697 24.56172110810381 20.496939113967333 24.561440533491886 43 29.73140592400356 23.20761923536587 21.376552721250462 25.684422119380105 44 28.460866490034782 24.105470192424168 22.6305504520118 24.80311286552925 45 27.278366489729812 23.422246614592833 22.216568711563568 27.082818184113794 46 27.923078152350307 22.993296828543173 21.157362954855667 27.926262064250857 47 28.94152739695196 22.22289993867615 22.56611588243826 26.26945678193363 48 28.64365475025627 21.987668623816905 22.64293233162504 26.725744294301784 49 28.56570380372562 22.309048543433498 23.18546603991991 25.939781612920974 50 27.988281252382595 22.8899721779775 22.328164213732958 26.793582355906942 51 27.044733230268925 23.600191913034557 22.997468851033545 26.35760600566297 52 27.467388385894516 23.217951700422436 23.046349827989467 26.268310085693585 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 4.0 6 8.0 7 47.0 8 86.0 9 343.5 10 601.0 11 1281.0 12 1961.0 13 2768.5 14 3929.0 15 4282.0 16 5206.0 17 6130.0 18 6940.0 19 7750.0 20 9494.5 21 11239.0 22 15590.0 23 19941.0 24 25445.0 25 30949.0 26 39513.5 27 48078.0 28 53589.0 29 59100.0 30 64985.5 31 70871.0 32 74872.5 33 78874.0 34 91021.0 35 103168.0 36 113787.0 37 124406.0 38 143098.0 39 176184.0 40 190578.0 41 208793.5 42 227009.0 43 257474.5 44 287940.0 45 340713.0 46 393486.0 47 431245.0 48 469004.0 49 480611.5 50 492219.0 51 522798.5 52 553378.0 53 594229.0 54 635080.0 55 669390.5 56 703701.0 57 712876.5 58 722052.0 59 700662.0 60 679272.0 61 635148.5 62 591025.0 63 511563.5 64 397336.0 65 362570.0 66 309480.5 67 256391.0 68 223338.5 69 190286.0 70 160733.5 71 131181.0 72 106548.0 73 81915.0 74 56114.0 75 30313.0 76 26501.5 77 22690.0 78 15345.0 79 8000.0 80 5547.0 81 3094.0 82 1940.0 83 786.0 84 537.0 85 288.0 86 205.5 87 123.0 88 122.0 89 85.0 90 49.0 91 24.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 8197463.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 6.8928262447230315 #Duplication Level Percentage of deduplicated Percentage of total 1 70.46643111913986 4.857128657899749 2 8.557357596298363 1.1796875805049072 3 4.4002797758209065 0.9099109176870698 4 2.6851928089674457 0.7403426986316948 5 1.7965564331446149 0.6191675666252601 6 1.1930464173782664 0.4934076994126621 7 0.8439063247143099 0.4071829764154987 8 0.6085744638537086 0.3355838429055273 9 0.4606766877468744 0.285782792727036 >10 3.265505785130471 4.7663476102274975 >50 1.2621136425526354 6.520070021456122 >100 4.135565326722819 63.50829666710829 >500 0.29929848650584784 13.165299046530887 >1k 0.025495132023893453 2.211791921867788 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 3.903646774617952E-4 0.0 0.0 0.0 0.0 12 0.0016590498792126295 0.0 0.0 0.0 0.0 13 0.0038426522937645463 0.0 0.0 0.0 0.0 14 0.019835405173527467 0.0 0.0 0.0 0.0 15 0.03329078764978872 0.0 0.0 0.0 0.0 16 0.04322068913272314 0.0 0.0 0.0 0.0 17 0.05401671224377591 0.0 0.0 0.0 0.0 18 0.06672796205362562 0.0 0.0 0.0 0.0 19 0.07997596329498528 0.0 0.0 0.0 0.0 20 0.09482201993470418 0.0 0.0 0.0 0.0 21 0.10796023111052773 0.0 0.0 0.0 0.0 22 0.12240372417661416 0.0 0.0 0.0 0.0 23 0.13610308457628903 0.0 0.0 0.0 0.0 24 0.1513639036858111 0.0 0.0 0.0 0.0 25 0.16757623669664626 0.0 0.0 0.0 0.0 26 0.186789498165469 0.0 0.0 0.0 0.0 27 0.205112240213832 0.0 0.0 0.0 0.0 28 0.22452068402138564 0.0 0.0 0.0 0.0 29 0.2474668077184368 0.0 0.0 0.0 0.0 30 0.2764635839161458 0.0 0.0 0.0 0.0 31 0.3037891113384714 0.0 0.0 0.0 0.0 32 0.3261984836040126 0.0 0.0 0.0 0.0 33 0.34438703779449814 0.0 0.0 0.0 0.0 34 0.3624658019194475 0.0 0.0 0.0 0.0 35 0.37909289740008584 0.0 0.0 0.0 0.0 36 0.3968178935360855 0.0 0.0 0.0 0.0 37 0.4141037294099406 0.0 0.0 0.0 0.0 38 0.4338049467255906 0.0 0.0 0.0 0.0 39 0.4551042194395998 0.0 0.0 0.0 0.0 40 0.48131964731039345 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGTAC 4680 0.0 43.149574 1 TCGGGGC 107160 0.0 42.844902 9 TTTACTT 124790 0.0 42.807755 3 TTACTTC 341625 0.0 42.807438 4 CGGGATA 7920 0.0 42.805557 10 TTCGTAC 4125 0.0 42.766064 1 CTATACT 16115 0.0 42.74589 2 TCGTACT 10740 0.0 42.70205 2 TCGGGGG 154640 0.0 42.678806 9 TCGGGAT 60660 0.0 42.678535 9 ACTTCGG 873080 0.0 42.662277 6 TACTTCG 880185 0.0 42.6333 5 TTCGGGC 85280 0.0 42.601784 8 CTACTTC 188380 0.0 42.59603 4 CGTACTT 32545 0.0 42.58657 3 CTTCGGG 836400 0.0 42.572273 7 TTCGGGG 446830 0.0 42.568764 8 TCTACTT 70480 0.0 42.511494 3 TCGGGAG 88685 0.0 42.491062 9 CGGGATT 20455 0.0 42.43559 10 >>END_MODULE