##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527996_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3054513 Sequences flagged as poor quality 0 Sequence length 52 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.868460209532582 33.0 31.0 34.0 30.0 34.0 2 32.347608276671274 34.0 31.0 34.0 30.0 34.0 3 32.44972668310791 34.0 31.0 34.0 30.0 34.0 4 35.994727473741314 37.0 35.0 37.0 35.0 37.0 5 36.005933188040125 37.0 35.0 37.0 35.0 37.0 6 36.09298863681379 37.0 36.0 37.0 35.0 37.0 7 36.33109238690423 37.0 37.0 37.0 35.0 37.0 8 36.12046535732537 37.0 37.0 37.0 35.0 37.0 9 38.1357273647223 39.0 39.0 39.0 37.0 39.0 10 37.66766093318313 39.0 38.0 39.0 35.0 39.0 11 38.09094248412104 39.0 38.0 39.0 37.0 39.0 12 38.109877417447564 39.0 39.0 39.0 37.0 39.0 13 38.01156518240387 39.0 39.0 39.0 37.0 39.0 14 38.50313323269536 40.0 38.0 40.0 36.0 40.0 15 37.0800687376351 39.0 35.0 40.0 33.0 40.0 16 36.820102255253126 39.0 35.0 40.0 32.0 40.0 17 36.85199211789244 39.0 35.0 40.0 32.0 40.0 18 37.01356615604517 39.0 35.0 40.0 32.0 40.0 19 37.219902812657864 40.0 35.0 40.0 33.0 40.0 20 37.2759716524369 40.0 35.0 40.0 33.0 40.0 21 37.1123331280633 40.0 35.0 40.0 32.0 40.0 22 37.20455208408018 40.0 35.0 40.0 33.0 40.0 23 37.135343015400494 40.0 35.0 40.0 32.0 40.0 24 37.13911088281503 40.0 35.0 40.0 32.0 40.0 25 37.243350085594656 40.0 35.0 40.0 33.0 40.0 26 37.23811160731678 40.0 35.0 40.0 33.0 40.0 27 37.201948395701706 40.0 35.0 40.0 33.0 40.0 28 37.12535680810656 40.0 35.0 40.0 33.0 40.0 29 37.07625241732479 40.0 35.0 40.0 33.0 40.0 30 36.99786447135763 40.0 35.0 40.0 33.0 40.0 31 36.93056765513848 39.0 35.0 40.0 32.0 40.0 32 36.854663574848104 39.0 35.0 40.0 32.0 40.0 33 36.79526097940981 39.0 35.0 40.0 32.0 40.0 34 36.71684487838159 39.0 35.0 40.0 32.0 40.0 35 36.65154674411273 39.0 35.0 40.0 32.0 40.0 36 36.55775470590566 39.0 35.0 40.0 32.0 40.0 37 36.43107755638951 39.0 35.0 40.0 31.0 40.0 38 36.23914614211824 38.0 35.0 40.0 31.0 40.0 39 36.068105128378896 38.0 35.0 40.0 31.0 40.0 40 35.87261570011324 38.0 35.0 40.0 30.0 40.0 41 35.642345277299526 38.0 35.0 40.0 30.0 40.0 42 35.4497148972684 37.0 35.0 40.0 30.0 40.0 43 35.2483397517051 37.0 35.0 40.0 29.0 40.0 44 35.05940750620476 37.0 34.0 40.0 28.0 40.0 45 34.87207027765146 36.0 34.0 40.0 28.0 40.0 46 34.69567652846788 36.0 34.0 40.0 27.0 40.0 47 34.5397122225376 35.0 34.0 40.0 27.0 40.0 48 34.330529940452045 35.0 34.0 40.0 26.0 40.0 49 34.176982386390236 35.0 34.0 39.0 26.0 40.0 50 34.00967584685349 35.0 33.0 39.0 25.0 40.0 51 33.788368882371756 35.0 33.0 39.0 24.0 40.0 52 33.19126191311021 35.0 33.0 38.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 3.0 13 6.0 14 11.0 15 18.0 16 82.0 17 247.0 18 529.0 19 1265.0 20 2239.0 21 3748.0 22 6020.0 23 9280.0 24 13038.0 25 18147.0 26 24807.0 27 32420.0 28 42159.0 29 53780.0 30 66817.0 31 79046.0 32 93494.0 33 120889.0 34 206081.0 35 371812.0 36 243943.0 37 464103.0 38 812908.0 39 387620.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.261063874994147 20.343210194227364 34.3652163208996 16.03050960987889 2 24.25542140432861 21.677432703674857 34.739809586667334 19.327336305329197 3 24.238495629254157 20.592906299629433 36.430586479743255 18.73801159137316 4 28.64397696130283 20.108671987973207 39.13609141620939 12.11125963451457 5 0.0 0.0 0.0 100.0 6 0.0 0.0 100.0 0.0 7 0.0 0.0 100.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 0.0 100.0 0.0 10 100.0 0.0 0.0 0.0 11 99.1928009473196 0.5037136852912395 0.1687339356552092 0.13475143173396217 12 98.74673966029937 0.7037128340917194 0.3647389943994345 0.18480851120947922 13 93.61191129322415 3.4041433118798317 1.7464649847618918 1.2374804101341195 14 53.83817322106667 27.886671295882522 7.541758702614787 10.73339678043603 15 31.75969458961216 29.517242192126865 18.28147400256604 20.44158921569494 16 29.437262175672522 19.279603655312645 27.26277478602972 24.02035938298511 17 22.218369998752667 18.61848353567328 31.94224414824884 27.22090231732522 18 21.792606546444556 21.363340080726452 32.258661200656206 24.58539217217278 19 24.809683245741628 21.339113632844253 28.389009966564227 25.46219315484989 20 25.949504880156017 21.03130679096799 25.827194056793996 27.191994272082 21 28.09789973066083 22.61607660533774 22.965559485260005 26.32046417874142 22 28.274032554453033 21.33760766446239 22.894386109995278 27.493973671089307 23 26.72730481094695 21.171361850481567 24.950098428129134 27.15123491044235 24 26.392030415323163 22.86253160487449 24.421863648967935 26.32357433083441 25 27.734306581769335 19.641690835822274 25.5740604148681 27.04994216754029 26 29.056743251706575 20.00967093608703 23.802779690248492 27.1308061219579 27 31.213879266514827 22.592472187874137 21.098125953302542 25.095522592308495 28 31.74073903106649 22.17996780501507 20.932600385069566 25.146692778848873 29 33.25852599088627 21.074979874042114 19.954244751945726 25.712249383125886 30 31.828510796974836 22.923850708770924 19.435635075051245 25.812003419202995 31 27.420377651036354 24.00615089868663 20.52471212268535 28.048759327591664 32 28.33934574840572 26.05105953060275 20.2213904475116 25.388204273479932 33 28.11567670525547 26.60437195716633 20.29312037630876 24.98683096126944 34 26.272960697826463 27.133163289859958 21.298256055875356 25.295619956438227 35 28.10097714431073 27.014257264578674 19.26647553963594 25.618290051474652 36 28.715444982555322 27.238024523058176 20.6178202548164 23.428710239570105 37 29.120746907935896 26.841496500424128 20.85805495016718 23.179701641472796 38 28.48015379211023 27.298525165877507 22.432184770534615 21.789136271477645 39 28.548511661269732 27.84676313376306 22.409595244806617 21.19512996016059 40 28.886634301441834 27.8978023665311 20.39611551825119 22.819447813775877 41 28.513023188966617 27.546878995113133 20.26670045273993 23.673397363180317 42 29.2268849404144 27.86398355482527 19.716105316952326 23.19302618780801 43 29.160720546941526 26.48634986984832 19.875705226987083 24.477224356223072 44 27.262512878485047 28.772671781066244 20.22800361301458 23.73681172743413 45 27.105630259226267 27.553262991514522 21.378465241431286 23.962641507827925 46 28.04054197837757 26.741316864586924 20.98052946574462 24.237611691290887 47 29.34896659467483 25.00405138233165 21.240014365628827 24.406967657364692 48 27.169404746354004 25.777824484623245 21.881196773430002 25.171573995592748 49 27.282450590323236 26.050535715513405 21.230618432463704 25.43639526169966 50 27.81720031965816 27.559123172826567 20.378600451201223 24.245076056314048 51 25.441011382174505 28.306672782207837 22.02616259940619 24.226153236211466 52 26.31856534904255 28.200469272843165 21.385078406934262 24.095886971180022 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 2.0 8 4.0 9 85.0 10 166.0 11 482.0 12 798.0 13 1499.0 14 2563.5 15 2927.0 16 3318.0 17 3709.0 18 3913.0 19 4117.0 20 4609.5 21 5102.0 22 6723.0 23 8344.0 24 10871.0 25 13398.0 26 17811.5 27 22225.0 28 28669.0 29 35113.0 30 41439.0 31 47765.0 32 50481.5 33 53198.0 34 52692.5 35 52187.0 36 51642.5 37 51098.0 38 49329.5 39 51351.0 40 55141.0 41 62146.5 42 69152.0 43 75633.5 44 82115.0 45 94102.5 46 106090.0 47 118608.5 48 131127.0 49 146125.0 50 161123.0 51 170776.0 52 180429.0 53 189339.5 54 198250.0 55 203123.5 56 207997.0 57 230779.0 58 253561.0 59 260348.5 60 267136.0 61 263337.0 62 259538.0 63 233194.5 64 179317.5 65 151784.0 66 131504.5 67 111225.0 68 102514.0 69 93803.0 70 85803.0 71 77803.0 72 60163.5 73 42524.0 74 33256.0 75 23988.0 76 19601.0 77 15214.0 78 10625.5 79 6037.0 80 3665.0 81 1293.0 82 1304.5 83 1316.0 84 1068.0 85 820.0 86 475.5 87 131.0 88 113.5 89 76.5 90 57.0 91 28.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3054513.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 12.312955344790533 #Duplication Level Percentage of deduplicated Percentage of total 1 77.0630885031795 9.488743674712898 2 7.356964041787231 1.8117193943951166 3 3.3609794008628997 1.2415076783275716 4 2.143415724728132 1.055671284155973 5 1.4911298186783708 0.9180107435336191 6 1.1081975714094061 0.8187112325981601 7 0.8071322691795956 0.6956728511423469 8 0.6241504387311295 0.6148109184422254 9 0.48027471254427784 0.5322240979910822 >10 3.0640193022517175 7.0250561312093 >50 0.4582414276731864 4.153920898629312 >100 1.8337522643886481 53.622555582384244 >500 0.19099914173634436 15.328988160004482 >1k 0.01765538284957805 2.6924073524736967 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.00435421293017905 0.0 0.0 0.0 0.0 12 0.007202457478491661 0.0 0.0 0.0 0.0 13 0.02006866561052449 0.0 0.0 0.0 0.0 14 0.06950371466744454 0.0 0.0 0.0 0.0 15 0.12394774551622469 0.0 0.0 0.0 0.0 16 0.15239745255626674 0.0 0.0 0.0 0.0 17 0.17128753421576534 0.0 0.0 0.0 0.0 18 0.20088308676374925 0.0 0.0 0.0 0.0 19 0.2276631332065046 0.0 0.0 0.0 0.0 20 0.25473782563701647 0.0 0.0 0.0 0.0 21 0.2807976263319226 0.0 0.0 0.0 0.0 22 0.30964019468897336 0.0 0.0 0.0 0.0 23 0.3407417156188237 0.0 0.0 0.0 0.0 24 0.3723343131949348 0.0 0.0 0.0 0.0 25 0.4074954010672078 0.0 0.0 0.0 0.0 26 0.45035002306423316 0.0 0.0 0.0 0.0 27 0.49133855380546754 0.0 0.0 0.0 0.0 28 0.5331455456238032 0.0 0.0 0.0 0.0 29 0.5797323501324106 0.0 0.0 0.0 0.0 30 0.6340781656519386 0.0 0.0 0.0 0.0 31 0.6878346891959537 0.0 0.0 0.0 0.0 32 0.7390376141794126 0.0 0.0 0.0 0.0 33 0.7838565427614811 0.0 0.0 0.0 0.0 34 0.8261873496691616 0.0 0.0 0.0 0.0 35 0.8661937271178745 0.0 0.0 0.0 0.0 36 0.908557272468639 0.0 0.0 0.0 0.0 37 0.9522630939858497 0.0 0.0 0.0 0.0 38 0.9997338364577266 0.0 0.0 0.0 0.0 39 1.0541123904203387 0.0 0.0 0.0 0.0 40 1.1133362339593906 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATATCG 75 0.0 46.000004 38 TAAACGG 75 0.0 46.000004 25 CGATTCA 55 1.8189894E-12 46.000004 23 TATAGCG 75 0.0 46.000004 42 TTCGCGA 75 0.0 46.000004 37 ATATTCG 75 0.0 46.000004 18 CGGCGTA 25 3.418495E-5 46.0 29 CGAACTA 25 3.418495E-5 46.0 32 GCGACTA 50 1.6370905E-11 46.0 34 CGTATGA 90 0.0 46.0 45 CGTATAA 20 6.3131057E-4 46.0 24 TAGACGT 40 5.6170393E-9 46.0 33 ACGCAAT 20 6.3131057E-4 46.0 30 GACGTAA 25 3.418495E-5 46.0 39 GGCGTAA 20 6.3131057E-4 46.0 30 TAGCGAT 20 6.3131057E-4 46.0 20 TACGGTA 25 3.418495E-5 46.0 31 TAACGTT 20 6.3131057E-4 46.0 46 CGATTGG 40 5.6170393E-9 46.0 21 TACGGAT 115 0.0 46.0 17 >>END_MODULE